Wall clock time and date at job start Sat Apr 11 2020 06:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45199 * 109.47197 * 2 1 4 4 C 1.34223 * 117.00051 * 179.97438 * 3 2 1 5 5 O 1.20824 * 119.99986 * 359.97438 * 4 3 2 6 6 C 1.50704 * 120.00041 * 179.97438 * 4 3 2 7 7 H 1.08994 * 109.47144 * 299.99501 * 6 4 3 8 8 C 1.50702 * 109.47040 * 179.97438 * 6 4 3 9 9 O 1.21284 * 119.99835 * 267.81404 * 8 6 4 10 10 N 1.34776 * 120.00132 * 87.81862 * 8 6 4 11 11 C 1.46962 * 120.59624 * 4.45661 * 10 8 6 12 12 C 1.53367 * 108.63691 * 235.25381 * 11 10 8 13 13 H 1.08998 * 109.61361 * 70.31531 * 12 11 10 14 14 C 1.52999 * 109.75258 * 190.74577 * 12 11 10 15 15 N 1.46966 * 108.63616 * 310.57392 * 12 11 10 16 16 C 1.36932 * 120.59724 * 235.21083 * 15 12 11 17 17 H 1.08005 * 120.00316 * 30.88477 * 16 15 12 18 18 C 1.38816 * 120.00156 * 210.89424 * 16 15 12 19 19 N 1.31618 * 119.99933 * 11.19324 * 18 16 15 20 20 Si 1.86797 * 120.00001 * 191.20265 * 18 16 15 21 21 H 1.48503 * 109.47112 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47453 * 119.99474 * 20 18 16 23 23 H 1.48501 * 109.46764 * 239.99739 * 20 18 16 24 24 C 1.46962 * 118.80860 * 55.22506 * 15 12 11 25 25 H 1.09004 * 109.61235 * 185.03178 * 24 15 12 26 26 C 1.52998 * 109.61109 * 64.69495 * 24 15 12 27 27 C 1.46966 * 120.59138 * 184.48445 * 10 8 6 28 28 C 1.52997 * 109.47206 * 59.99776 * 6 4 3 29 29 C 1.52999 * 109.47083 * 175.08078 * 28 6 4 30 30 C 1.52994 * 109.47342 * 295.08522 * 28 6 4 31 31 H 1.08997 * 109.47573 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47547 * 300.00551 * 1 2 3 33 33 H 1.09002 * 109.46841 * 60.00398 * 1 2 3 34 34 H 1.08991 * 109.47301 * 239.99598 * 2 1 3 35 35 H 1.09002 * 109.46841 * 119.99601 * 2 1 3 36 36 H 1.08996 * 109.61050 * 115.50608 * 11 10 8 37 37 H 1.08998 * 109.60568 * 354.99544 * 11 10 8 38 38 H 1.08996 * 109.47023 * 179.56908 * 14 12 11 39 39 H 1.08995 * 109.46871 * 299.57346 * 14 12 11 40 40 H 1.08999 * 109.46900 * 59.56788 * 14 12 11 41 41 H 0.96993 * 120.00072 * 180.02562 * 19 18 16 42 42 H 1.08998 * 109.47293 * 59.99852 * 26 24 15 43 43 H 1.09001 * 109.47139 * 179.97438 * 26 24 15 44 44 H 1.09000 * 109.46879 * 299.99392 * 26 24 15 45 45 H 1.08994 * 109.61337 * 5.00585 * 27 10 8 46 46 H 1.08997 * 109.74901 * 244.57422 * 27 10 8 47 47 H 1.09006 * 109.47263 * 55.08125 * 28 6 4 48 48 H 1.08999 * 109.47238 * 63.63154 * 29 28 6 49 49 H 1.09008 * 109.47052 * 183.62472 * 29 28 6 50 50 H 1.09000 * 109.47533 * 303.62791 * 29 28 6 51 51 H 1.09007 * 109.47144 * 59.99678 * 30 28 6 52 52 H 1.08999 * 109.47816 * 180.02562 * 30 28 6 53 53 H 1.09002 * 109.46947 * 300.00357 * 30 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0015 6 6 3.9207 2.9374 0.0000 7 1 3.5853 3.4690 -0.8905 8 6 5.4257 2.8585 0.0014 9 8 6.0324 2.8676 1.0515 10 7 6.0974 2.7780 -1.1643 11 6 5.3839 2.8641 -2.4462 12 6 5.7207 1.6210 -3.2790 13 1 5.2500 0.7442 -2.8344 14 6 5.2140 1.8051 -4.7109 15 7 7.1797 1.4449 -3.2910 16 6 7.8621 1.3622 -4.4753 17 1 7.4995 1.8893 -5.3454 18 6 9.0198 0.6006 -4.5576 19 7 9.3433 -0.2133 -3.5752 20 14 10.1186 0.7313 -6.0625 21 1 9.5367 1.7089 -7.0170 22 1 11.4707 1.1861 -5.6503 23 1 10.2215 -0.5978 -6.7170 24 6 7.8931 1.3587 -2.0090 25 1 8.9673 1.3198 -2.1901 26 6 7.4528 0.0995 -1.2598 27 6 7.5564 2.6018 -1.1761 28 6 3.4485 3.6851 1.2485 29 6 4.1296 5.0537 1.3114 30 6 1.9314 3.8727 1.1874 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 1.8933 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 5.6999 3.7595 -2.9813 37 1 4.3098 2.9030 -2.2651 38 1 5.4624 0.9226 -5.3004 39 1 4.1326 1.9416 -4.6989 40 1 5.6859 2.6824 -5.1533 41 1 10.1524 -0.7452 -3.6325 42 1 7.6818 -0.7800 -1.8615 43 1 7.9835 0.0377 -0.3098 44 1 6.3795 0.1437 -1.0746 45 1 7.9170 2.4676 -0.1564 46 1 8.0296 3.4781 -1.6191 47 1 3.7079 3.1091 2.1368 48 1 3.8193 5.6536 0.4558 49 1 3.8431 5.5602 2.2332 50 1 5.2115 4.9226 1.2900 51 1 1.4462 2.8976 1.1426 52 1 1.5950 4.4058 2.0766 53 1 1.6720 4.4487 0.2991 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880466283.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:33 Heat of formation + Delta-G solvation = -114.723844 kcal Electronic energy + Delta-G solvation = -33348.630076 eV Core-core repulsion = 29220.693018 eV Total energy + Delta-G solvation = -4127.937058 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.33185 -40.88408 -39.16692 -37.74146 -36.79440 -35.74989 -34.35481 -33.21973 -32.61231 -30.40809 -29.71689 -28.11377 -27.77366 -27.00804 -25.48597 -24.47161 -22.89991 -22.55350 -21.91766 -20.86409 -19.97156 -19.12319 -18.52887 -17.88562 -17.76698 -17.42703 -16.92642 -16.85021 -16.10597 -15.81566 -15.37678 -15.30909 -15.20604 -14.98252 -14.84522 -14.53470 -14.12377 -13.91718 -13.66262 -13.58560 -13.53109 -13.41626 -13.03276 -12.97269 -12.93278 -12.85292 -12.82070 -12.61070 -12.51830 -12.36238 -12.31225 -12.16624 -11.96099 -11.87711 -11.79604 -11.68772 -11.54289 -11.52039 -11.44024 -11.37446 -10.81995 -10.47153 -9.74481 -8.50218 -7.77423 -5.29285 0.99328 1.04599 1.48740 1.51596 1.60076 1.91225 2.02420 2.54439 3.16595 3.37635 3.46817 3.52373 3.65057 3.77670 4.01301 4.09567 4.10225 4.17257 4.25221 4.30066 4.36719 4.37212 4.45709 4.58799 4.60392 4.64248 4.68242 4.79382 4.81615 4.85557 4.87181 4.96148 4.96580 5.02039 5.07880 5.08979 5.14608 5.16032 5.23793 5.30871 5.38059 5.40132 5.40681 5.55006 5.56164 5.72155 5.74441 5.83036 6.43626 6.47657 6.59187 7.07179 7.21505 7.89298 8.44113 9.26731 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.015016 B = 0.003806 C = 0.003469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.185399 B = 7354.648463 C = 8068.458798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.049 3.951 3 O -0.335 6.335 4 C 0.476 3.524 5 O -0.528 6.528 6 C -0.098 4.098 7 H 0.158 0.842 8 C 0.530 3.470 9 O -0.571 6.571 10 N -0.590 5.590 11 C 0.096 3.904 12 C 0.148 3.852 13 H 0.004 0.996 14 C -0.126 4.126 15 N -0.592 5.592 16 C -0.248 4.248 17 H 0.081 0.919 18 C -0.049 4.049 19 N -0.929 5.929 20 Si 0.962 3.038 21 H -0.263 1.263 22 H -0.297 1.297 23 H -0.300 1.300 24 C 0.183 3.817 25 H 0.077 0.923 26 C -0.118 4.118 27 C 0.107 3.893 28 C -0.069 4.069 29 C -0.147 4.147 30 C -0.148 4.148 31 H 0.095 0.905 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.088 0.912 37 H 0.100 0.900 38 H 0.042 0.958 39 H 0.079 0.921 40 H 0.062 0.938 41 H 0.245 0.755 42 H 0.039 0.961 43 H 0.022 0.978 44 H 0.028 0.972 45 H 0.069 0.931 46 H 0.068 0.932 47 H 0.059 0.941 48 H 0.076 0.924 49 H 0.076 0.924 50 H 0.037 0.963 51 H 0.071 0.929 52 H 0.074 0.926 53 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.582 9.410 5.738 23.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.025 4.025 3 O -0.251 6.251 4 C 0.319 3.681 5 O -0.416 6.416 6 C -0.119 4.119 7 H 0.175 0.825 8 C 0.317 3.683 9 O -0.451 6.451 10 N -0.320 5.320 11 C -0.028 4.028 12 C 0.042 3.958 13 H 0.022 0.978 14 C -0.184 4.184 15 N -0.316 5.316 16 C -0.378 4.378 17 H 0.099 0.901 18 C -0.244 4.244 19 N -0.575 5.575 20 Si 0.792 3.208 21 H -0.187 1.187 22 H -0.224 1.224 23 H -0.228 1.228 24 C 0.075 3.925 25 H 0.095 0.905 26 C -0.178 4.178 27 C -0.017 4.017 28 C -0.088 4.088 29 C -0.204 4.204 30 C -0.205 4.205 31 H 0.113 0.887 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.106 0.894 37 H 0.118 0.882 38 H 0.061 0.939 39 H 0.098 0.902 40 H 0.081 0.919 41 H 0.054 0.946 42 H 0.058 0.942 43 H 0.041 0.959 44 H 0.047 0.953 45 H 0.087 0.913 46 H 0.087 0.913 47 H 0.078 0.922 48 H 0.095 0.905 49 H 0.095 0.905 50 H 0.056 0.944 51 H 0.090 0.910 52 H 0.093 0.907 53 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -19.948 9.005 6.245 22.760 hybrid contribution 1.575 -1.132 -0.567 2.021 sum -18.373 7.874 5.678 20.780 Atomic orbital electron populations 1.21805 0.89422 1.04339 1.04232 1.23337 0.97605 0.79392 1.02132 1.86545 1.22062 1.33150 1.83373 1.23194 0.81584 0.91293 0.72061 1.90792 1.61308 1.44014 1.45529 1.21547 0.91485 0.92379 1.06525 0.82526 1.20121 0.89301 0.75615 0.83224 1.90629 1.70412 1.52001 1.32018 1.47978 1.08092 1.69722 1.06199 1.22547 0.96749 1.00057 0.83428 1.20943 0.85167 0.93850 0.95882 0.97801 1.21686 1.00428 1.01856 0.94434 1.44315 1.00936 1.84731 1.01572 1.19542 1.05748 1.22091 0.90428 0.90128 1.25847 1.02214 0.96544 0.99824 1.70150 1.25641 1.27791 1.33926 0.85277 0.78683 0.76804 0.80053 1.18722 1.22407 1.22792 1.20557 0.97647 0.89968 0.84292 0.90490 1.21750 0.98161 1.00490 0.97350 1.22153 0.79795 0.99390 1.00406 1.20924 0.98294 0.96526 0.93098 1.21881 0.99863 0.94945 1.03706 1.22030 0.91237 1.03556 1.03702 0.88653 0.90618 0.90629 0.92018 0.92027 0.89395 0.88196 0.93918 0.90189 0.91911 0.94598 0.94222 0.95861 0.95294 0.91287 0.91341 0.92250 0.90480 0.90469 0.94359 0.91022 0.90674 0.90439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 10.29 71.98 0.74 -0.86 16 2 C 0.05 0.96 6.19 71.98 0.45 1.41 16 3 O -0.33 -7.45 7.36 -51.35 -0.38 -7.83 16 4 C 0.48 13.96 7.20 71.24 0.51 14.47 16 5 O -0.53 -20.66 15.18 21.97 0.33 -20.33 16 6 C -0.10 -2.54 1.49 -12.29 -0.02 -2.56 16 7 H 0.16 2.99 6.08 -2.39 -0.01 2.98 16 8 C 0.53 18.77 5.07 87.66 0.44 19.22 16 9 O -0.57 -24.04 14.38 -3.04 -0.04 -24.08 16 10 N -0.59 -21.56 2.61 -818.03 -2.13 -23.69 16 11 C 0.10 2.99 5.76 86.41 0.50 3.48 16 12 C 0.15 5.80 3.23 45.03 0.15 5.95 16 13 H 0.00 0.19 7.40 -2.39 -0.02 0.17 16 14 C -0.13 -4.12 7.97 71.98 0.57 -3.55 16 15 N -0.59 -28.35 2.68 -650.70 -1.75 -30.09 16 16 C -0.25 -12.72 8.55 84.04 0.72 -12.00 16 17 H 0.08 3.91 6.25 -2.91 -0.02 3.90 16 18 C -0.05 -2.64 5.04 84.86 0.43 -2.21 16 19 N -0.93 -53.85 9.89 21.65 0.21 -53.64 16 20 Si 0.96 43.97 29.57 68.60 2.03 46.00 16 21 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 22 H -0.30 -13.77 7.11 99.48 0.71 -13.07 16 23 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 24 C 0.18 8.96 2.33 45.03 0.10 9.07 16 25 H 0.08 4.30 5.99 -2.38 -0.01 4.28 16 26 C -0.12 -6.09 8.93 71.98 0.64 -5.44 16 27 C 0.11 4.48 5.96 86.42 0.52 5.00 16 28 C -0.07 -1.50 2.10 -10.80 -0.02 -1.52 16 29 C -0.15 -2.95 8.90 71.98 0.64 -2.31 16 30 C -0.15 -2.15 8.83 71.98 0.64 -1.51 16 31 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.07 0.74 8.14 -2.38 -0.02 0.73 16 33 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.06 1.35 8.13 -2.39 -0.02 1.33 16 35 H 0.06 1.31 8.13 -2.39 -0.02 1.29 16 36 H 0.09 2.49 8.12 -2.39 -0.02 2.47 16 37 H 0.10 2.38 5.38 -2.39 -0.01 2.37 16 38 H 0.04 1.59 7.71 -2.39 -0.02 1.57 16 39 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.06 1.98 7.34 -2.39 -0.02 1.96 16 41 H 0.24 14.00 8.31 -92.71 -0.77 13.23 16 42 H 0.04 2.25 7.15 -2.39 -0.02 2.23 16 43 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.03 1.47 6.43 -2.39 -0.02 1.46 16 45 H 0.07 3.04 6.99 -2.39 -0.02 3.02 16 46 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 47 H 0.06 1.57 8.02 -2.38 -0.02 1.55 16 48 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 49 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 50 H 0.04 1.02 6.07 -2.39 -0.01 1.01 16 51 H 0.07 1.13 5.46 -2.38 -0.01 1.11 16 52 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 53 H 0.08 0.85 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -72.01 401.20 6.17 -65.84 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: 0.89 Total: 21.18 kcal Atomic # 6 Polarization: 19.64 SS G_CDS: 7.00 Total: 26.64 kcal Atomic # 7 Polarization: -103.76 SS G_CDS: -3.66 Total: -107.42 kcal Atomic # 8 Polarization: -52.15 SS G_CDS: -0.09 Total: -52.23 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -72.01 6.17 -65.84 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880466283.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.886 kcal (2) G-P(sol) polarization free energy of solvation -72.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds