Wall clock time and date at job start Sat Apr 11 2020 06:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46508 * 120.00003 * 2 1 4 4 C 1.50699 * 109.46800 * 270.00355 * 3 2 1 5 5 H 1.08000 * 120.00480 * 359.97438 * 4 3 2 6 6 C 1.37880 * 119.99847 * 179.97438 * 4 3 2 7 7 N 1.31513 * 120.00110 * 179.97438 * 6 4 3 8 8 Si 1.86799 * 119.99817 * 0.02562 * 6 4 3 9 9 H 1.48500 * 109.47270 * 89.99863 * 8 6 4 10 10 H 1.48502 * 109.47378 * 209.99869 * 8 6 4 11 11 H 1.48503 * 109.47393 * 329.99789 * 8 6 4 12 12 C 1.34773 * 120.00244 * 180.02562 * 2 1 3 13 13 O 1.21288 * 119.99932 * 180.02562 * 12 2 1 14 14 C 1.50696 * 120.00130 * 359.97438 * 12 2 1 15 15 C 1.53006 * 109.47241 * 180.02562 * 14 12 2 16 16 N 1.46904 * 109.46997 * 179.97438 * 15 14 12 17 17 C 1.46848 * 111.00034 * 65.79717 * 16 15 14 18 18 C 1.53036 * 109.56006 * 185.84364 * 17 16 15 19 19 H 1.09002 * 109.50816 * 60.73023 * 18 17 16 20 20 O 1.42902 * 109.54007 * 180.83950 * 18 17 16 21 21 C 1.53135 * 109.25824 * 300.79268 * 18 17 16 22 22 C 1.53037 * 109.15312 * 57.56234 * 21 18 17 23 23 C 1.53072 * 109.53168 * 182.26361 * 22 21 18 24 24 C 1.53111 * 109.17071 * 296.94818 * 23 22 21 25 25 O 1.42898 * 109.40672 * 302.51974 * 24 23 22 26 26 C 1.42916 * 114.13068 * 61.17839 * 25 24 23 27 27 C 1.53100 * 109.49323 * 62.55021 * 22 21 18 28 28 C 1.46863 * 111.00034 * 189.99955 * 16 15 14 29 29 H 1.09009 * 109.46611 * 269.99777 * 1 2 3 30 30 H 1.08999 * 109.47500 * 29.99852 * 1 2 3 31 31 H 1.08996 * 109.46985 * 150.00702 * 1 2 3 32 32 H 1.09004 * 109.46666 * 29.99847 * 3 2 1 33 33 H 1.08996 * 109.47186 * 150.00150 * 3 2 1 34 34 H 0.97003 * 119.99499 * 180.02562 * 7 6 4 35 35 H 1.09003 * 109.47183 * 59.99947 * 14 12 2 36 36 H 1.09001 * 109.47283 * 299.99988 * 14 12 2 37 37 H 1.08997 * 109.47000 * 60.00530 * 15 14 12 38 38 H 1.09001 * 109.46899 * 299.99566 * 15 14 12 39 39 H 1.09002 * 109.45359 * 65.81383 * 17 16 15 40 40 H 1.09002 * 109.45647 * 305.86882 * 17 16 15 41 41 H 0.96701 * 113.99988 * 299.88989 * 20 18 17 42 42 H 1.09002 * 109.52846 * 177.46002 * 21 18 17 43 43 H 1.08995 * 109.52965 * 297.66176 * 21 18 17 44 44 H 1.09003 * 109.51972 * 56.85565 * 23 22 21 45 45 H 1.09004 * 109.52143 * 177.03609 * 23 22 21 46 46 H 1.09002 * 109.47880 * 182.53933 * 24 23 22 47 47 H 1.08997 * 109.49153 * 62.51345 * 24 23 22 48 48 H 1.08993 * 109.48072 * 178.82776 * 26 25 24 49 49 H 1.08995 * 109.49550 * 58.78747 * 26 25 24 50 50 H 1.09001 * 109.52078 * 182.95823 * 27 22 21 51 51 H 1.08997 * 109.52235 * 303.08440 * 27 22 21 52 52 H 1.09004 * 109.46297 * 54.27459 * 28 16 15 53 53 H 1.09001 * 109.46349 * 294.31263 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0980 1.0958 -2.2417 6 6 3.1259 2.8780 -1.6728 7 7 3.3454 3.2575 -2.9127 8 14 3.7329 3.9292 -0.2530 9 1 5.1065 3.5082 0.1228 10 1 3.7477 5.3561 -0.6644 11 1 2.8271 3.7593 0.9114 12 6 2.1389 -1.1671 -0.0005 13 8 3.3518 -1.1671 -0.0001 14 6 1.3855 -2.4723 -0.0005 15 6 2.3798 -3.6352 -0.0005 16 7 1.6453 -4.9074 0.0001 17 6 0.8950 -5.0825 -1.2500 18 6 0.0304 -6.3418 -1.1565 19 1 -0.6769 -6.2374 -0.3338 20 8 -0.6847 -6.5225 -2.3805 21 6 0.9305 -7.5551 -0.9063 22 6 1.7377 -7.3260 0.3735 23 6 2.6820 -8.5089 0.6017 24 6 1.8542 -9.7794 0.8137 25 8 0.9680 -9.5899 1.9185 26 6 0.0292 -8.5274 1.7389 27 6 0.7836 -7.2065 1.5649 28 6 2.5516 -6.0383 0.2382 29 1 -0.3633 0.0000 1.0278 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3633 -0.8900 -0.5137 32 1 1.6083 2.0284 0.5138 33 1 3.1499 1.1385 0.5138 34 1 3.8223 4.0834 -3.0899 35 1 0.7585 -2.5298 -0.8903 36 1 0.7592 -2.5303 0.8897 37 1 3.0064 -3.5774 0.8895 38 1 3.0064 -3.5774 -0.8906 39 1 1.5929 -5.1822 -2.0814 40 1 0.2561 -4.2149 -1.4146 41 1 -1.2748 -5.7895 -2.6032 42 1 0.3155 -8.4480 -0.7940 43 1 1.6110 -7.6837 -1.7479 44 1 3.3255 -8.6345 -0.2691 45 1 3.2941 -8.3215 1.4840 46 1 2.5203 -10.6168 1.0214 47 1 1.2748 -9.9902 -0.0852 48 1 -0.6190 -8.4635 2.6128 49 1 -0.5741 -8.7211 0.8521 50 1 1.3541 -6.9910 2.4683 51 1 0.0723 -6.4009 1.3825 52 1 3.1141 -5.8659 1.1559 53 1 3.2431 -6.1321 -0.5992 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880581747.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:40 Heat of formation + Delta-G solvation = -156.241503 kcal Electronic energy + Delta-G solvation = -31277.026254 eV Core-core repulsion = 27147.288855 eV Total energy + Delta-G solvation = -4129.737399 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.76430 -40.71582 -39.13556 -37.36673 -36.64976 -35.70978 -34.71539 -32.48094 -32.01017 -31.20711 -30.15772 -28.53506 -27.38749 -26.48362 -24.75189 -24.52709 -23.56195 -23.05126 -21.59851 -19.94515 -19.36534 -19.16700 -18.33775 -17.95074 -17.23937 -17.07294 -17.03640 -16.81526 -16.47955 -16.20861 -15.87433 -15.70480 -15.52327 -15.32410 -14.79887 -14.69215 -14.52526 -14.37767 -13.89296 -13.78716 -13.66910 -13.61644 -13.57984 -13.32250 -13.13593 -12.98719 -12.78660 -12.63322 -12.48053 -12.35060 -12.18232 -12.08732 -11.95200 -11.87742 -11.77481 -11.73937 -11.16793 -11.11983 -10.85234 -10.79910 -10.67824 -10.28303 -9.43994 -9.39118 -8.36131 -6.41255 1.31458 1.35531 1.44060 1.79512 2.23243 2.29426 2.74470 2.98491 3.03529 3.21893 3.59170 3.70049 3.80368 3.83297 3.88605 3.98272 4.08613 4.09547 4.17452 4.25798 4.34027 4.35796 4.39900 4.43289 4.56061 4.61950 4.63628 4.66244 4.67746 4.77139 4.81460 4.84153 4.86095 4.88044 4.90184 4.94786 4.96474 4.99481 5.00110 5.04841 5.10821 5.23471 5.36292 5.44272 5.46276 5.60941 5.90368 5.96875 6.21648 6.32557 6.59898 6.69910 6.86615 7.19666 7.41534 8.80830 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.022137 B = 0.002232 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.544828 B =12543.857499 C =12866.591287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.608 5.608 3 C 0.222 3.778 4 C -0.536 4.536 5 H 0.027 0.973 6 C 0.009 3.991 7 N -0.946 5.946 8 Si 0.949 3.051 9 H -0.277 1.277 10 H -0.275 1.275 11 H -0.237 1.237 12 C 0.495 3.505 13 O -0.600 6.600 14 C -0.115 4.115 15 C 0.081 3.919 16 N -0.518 5.518 17 C 0.017 3.983 18 C 0.114 3.886 19 H 0.080 0.920 20 O -0.582 6.582 21 C -0.106 4.106 22 C -0.044 4.044 23 C -0.142 4.142 24 C 0.059 3.941 25 O -0.403 6.403 26 C 0.055 3.945 27 C -0.132 4.132 28 C 0.063 3.937 29 H 0.081 0.919 30 H 0.063 0.937 31 H 0.091 0.909 32 H 0.051 0.949 33 H 0.017 0.983 34 H 0.268 0.732 35 H 0.106 0.894 36 H 0.128 0.872 37 H 0.075 0.925 38 H 0.015 0.985 39 H 0.022 0.978 40 H 0.091 0.909 41 H 0.396 0.604 42 H 0.078 0.922 43 H 0.057 0.943 44 H 0.079 0.921 45 H 0.074 0.926 46 H 0.104 0.896 47 H 0.056 0.944 48 H 0.102 0.898 49 H 0.055 0.945 50 H 0.066 0.934 51 H 0.090 0.910 52 H 0.080 0.920 53 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.586 -25.192 10.017 29.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.339 5.339 3 C 0.099 3.901 4 C -0.574 4.574 5 H 0.045 0.955 6 C -0.189 4.189 7 N -0.586 5.586 8 Si 0.772 3.228 9 H -0.203 1.203 10 H -0.200 1.200 11 H -0.160 1.160 12 C 0.284 3.716 13 O -0.482 6.482 14 C -0.155 4.155 15 C -0.048 4.048 16 N -0.243 5.243 17 C -0.112 4.112 18 C 0.055 3.945 19 H 0.098 0.902 20 O -0.390 6.390 21 C -0.143 4.143 22 C -0.045 4.045 23 C -0.181 4.181 24 C -0.017 4.017 25 O -0.322 6.322 26 C -0.021 4.021 27 C -0.169 4.169 28 C -0.065 4.065 29 H 0.099 0.901 30 H 0.082 0.918 31 H 0.110 0.890 32 H 0.069 0.931 33 H 0.035 0.965 34 H 0.077 0.923 35 H 0.124 0.876 36 H 0.146 0.854 37 H 0.093 0.907 38 H 0.033 0.967 39 H 0.041 0.959 40 H 0.110 0.890 41 H 0.246 0.754 42 H 0.096 0.904 43 H 0.076 0.924 44 H 0.097 0.903 45 H 0.093 0.907 46 H 0.122 0.878 47 H 0.074 0.926 48 H 0.120 0.880 49 H 0.074 0.926 50 H 0.084 0.916 51 H 0.108 0.892 52 H 0.098 0.902 53 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -10.938 -25.694 10.446 29.815 hybrid contribution 1.219 1.749 -1.256 2.475 sum -9.719 -23.945 9.190 27.428 Atomic orbital electron populations 1.21986 0.77410 1.04009 1.03079 1.47986 1.08581 1.05930 1.71435 1.19334 0.92772 0.82754 0.95212 1.21560 1.36791 1.06645 0.92425 0.95456 1.25886 0.95330 0.99029 0.98672 1.70053 1.42731 1.24515 1.21311 0.85695 0.79528 0.77731 0.79869 1.20312 1.19969 1.15954 1.21391 0.87798 0.86796 0.75577 1.90640 1.16717 1.88266 1.52541 1.21562 0.98835 0.88674 1.06381 1.21626 0.94345 0.87936 1.00869 1.61874 1.27148 1.01245 1.34068 1.22977 0.97793 1.00083 0.90297 1.21750 0.92892 0.93082 0.86728 0.90211 1.86478 1.61535 1.49026 1.41924 1.21662 0.97997 0.97860 0.96819 1.20421 0.95385 0.93680 0.94987 1.22180 0.98180 0.94629 1.03073 1.22675 0.92191 0.97275 0.89582 1.87904 1.48438 1.53610 1.42248 1.22774 0.90924 0.85956 1.02446 1.22120 0.99201 0.98370 0.97239 1.22188 0.93610 0.89857 1.00849 0.90055 0.91772 0.89031 0.93117 0.96462 0.92269 0.87612 0.85356 0.90684 0.96662 0.95923 0.89040 0.75421 0.90392 0.92423 0.90258 0.90739 0.87837 0.92589 0.87978 0.92631 0.91565 0.89199 0.90151 0.95488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.04 10.24 127.77 1.31 3.35 16 2 N -0.61 -23.94 2.86 -851.12 -2.43 -26.37 16 3 C 0.22 10.75 4.23 85.63 0.36 11.11 16 4 C -0.54 -31.56 9.94 25.60 0.25 -31.31 16 5 H 0.03 1.80 8.06 -2.91 -0.02 1.77 16 6 C 0.01 0.52 5.47 84.66 0.46 0.98 16 7 N -0.95 -60.04 13.96 21.45 0.30 -59.74 16 8 Si 0.95 44.49 27.47 68.60 1.88 46.38 16 9 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 10 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 11 H -0.24 -9.88 6.54 99.48 0.65 -9.23 16 12 C 0.50 19.32 7.67 87.66 0.67 20.00 16 13 O -0.60 -29.78 15.56 -3.05 -0.05 -29.82 16 14 C -0.11 -2.89 4.18 29.85 0.12 -2.76 16 15 C 0.08 2.09 4.25 86.30 0.37 2.46 16 16 N -0.52 -10.06 4.01 -896.49 -3.60 -13.66 16 17 C 0.02 0.30 4.92 86.33 0.42 0.73 16 18 C 0.11 1.73 3.29 30.65 0.10 1.83 16 19 H 0.08 1.03 6.52 -2.39 -0.02 1.01 16 20 O -0.58 -9.27 13.32 -148.98 -1.99 -11.25 16 21 C -0.11 -1.63 3.88 30.65 0.12 -1.51 16 22 C -0.04 -0.65 0.52 -52.13 -0.03 -0.67 16 23 C -0.14 -1.89 4.92 30.66 0.15 -1.74 16 24 C 0.06 0.77 6.57 72.02 0.47 1.24 16 25 O -0.40 -6.76 10.76 -148.98 -1.60 -8.37 16 26 C 0.06 0.73 6.57 72.02 0.47 1.20 16 27 C -0.13 -1.80 4.51 30.66 0.14 -1.67 16 28 C 0.06 1.16 4.19 86.29 0.36 1.52 16 29 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 30 H 0.06 1.86 8.07 -2.39 -0.02 1.84 16 31 H 0.09 1.83 6.44 -2.39 -0.02 1.81 16 32 H 0.05 2.24 7.13 -2.38 -0.02 2.22 16 33 H 0.02 0.90 6.85 -2.39 -0.02 0.89 16 34 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 35 H 0.11 2.29 5.69 -2.39 -0.01 2.28 16 36 H 0.13 2.44 8.11 -2.39 -0.02 2.42 16 37 H 0.07 2.09 7.95 -2.39 -0.02 2.07 16 38 H 0.02 0.48 8.08 -2.39 -0.02 0.46 16 39 H 0.02 0.51 8.14 -2.39 -0.02 0.49 16 40 H 0.09 1.45 6.21 -2.39 -0.01 1.43 16 41 H 0.40 3.26 9.08 -74.06 -0.67 2.59 16 42 H 0.08 1.14 5.03 -2.39 -0.01 1.13 16 43 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 47 H 0.06 0.67 6.67 -2.39 -0.02 0.66 16 48 H 0.10 1.11 8.14 -2.39 -0.02 1.10 16 49 H 0.06 0.68 6.55 -2.39 -0.02 0.66 16 50 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 51 H 0.09 1.20 5.98 -2.39 -0.01 1.18 16 52 H 0.08 1.49 8.02 -2.38 -0.02 1.47 16 53 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 Total: -1.00 -80.11 396.06 -1.54 -81.65 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: 0.18 Total: 16.44 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: 5.77 Total: 4.74 kcal Atomic # 7 Polarization: -94.04 SS G_CDS: -5.73 Total: -99.77 kcal Atomic # 8 Polarization: -45.81 SS G_CDS: -3.64 Total: -49.44 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 1.88 Total: 46.38 kcal Total: -80.11 -1.54 -81.65 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880581747.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.589 kcal (2) G-P(sol) polarization free energy of solvation -80.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds