Wall clock time and date at job start Sat Apr 11 2020 06:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42904 * 113.99892 * 2 1 4 4 C 1.53001 * 109.47032 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.47329 * 174.99995 * 4 3 2 6 6 N 1.46502 * 109.47114 * 295.00006 * 4 3 2 7 7 C 1.34782 * 119.99818 * 274.99812 * 6 4 3 8 8 O 1.21584 * 119.99816 * 0.02562 * 7 6 4 9 9 N 1.34774 * 119.99656 * 179.97438 * 7 6 4 10 10 C 1.46504 * 119.99597 * 180.02562 * 9 7 6 11 11 H 1.08998 * 110.05600 * 325.03877 * 10 9 7 12 12 C 1.53876 * 110.03266 * 86.45674 * 10 9 7 13 13 C 1.54261 * 106.59990 * 119.28382 * 12 10 9 14 14 C 1.54888 * 104.19672 * 23.60631 * 13 12 10 15 15 H 1.09005 * 110.75648 * 80.37263 * 14 13 12 16 16 C 1.50703 * 110.75894 * 203.55764 * 14 13 12 17 17 H 1.08002 * 119.99768 * 118.54781 * 16 14 13 18 18 C 1.37878 * 119.99930 * 298.55149 * 16 14 13 19 19 N 1.31510 * 120.00004 * 359.97438 * 18 16 14 20 20 Si 1.86801 * 119.99691 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47210 * 89.99925 * 20 18 16 22 22 H 1.48500 * 109.46994 * 209.99641 * 20 18 16 23 23 H 1.48496 * 109.47276 * 329.99943 * 20 18 16 24 24 C 1.54267 * 110.02925 * 203.62194 * 10 9 7 25 25 C 1.52996 * 109.47251 * 55.00159 * 4 3 2 26 26 H 1.09004 * 109.52203 * 299.99566 * 25 4 3 27 27 C 1.53181 * 109.52336 * 179.87547 * 25 4 3 28 28 C 1.53187 * 109.02995 * 183.17377 * 27 25 4 29 29 C 1.53096 * 109.21262 * 56.88628 * 28 27 25 30 30 O 1.42902 * 109.41548 * 302.42161 * 29 28 27 31 31 C 1.42894 * 114.09876 * 61.15879 * 30 29 28 32 32 H 1.08997 * 109.47042 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47134 * 299.99906 * 1 2 3 34 34 H 1.08997 * 109.47524 * 59.99766 * 1 2 3 35 35 H 1.08999 * 109.47180 * 60.00096 * 3 2 1 36 36 H 1.08998 * 109.47151 * 300.00276 * 3 2 1 37 37 H 0.96997 * 119.99788 * 94.99878 * 6 4 3 38 38 H 0.96997 * 119.99950 * 0.02562 * 9 7 6 39 39 H 1.08998 * 110.02768 * 238.56979 * 12 10 9 40 40 H 1.08994 * 110.03051 * 359.97438 * 12 10 9 41 41 H 1.09000 * 110.48928 * 142.28640 * 13 12 10 42 42 H 1.09001 * 110.48691 * 264.79667 * 13 12 10 43 43 H 0.97002 * 119.99698 * 180.02562 * 19 18 16 44 44 H 1.09004 * 110.48597 * 335.78333 * 24 10 9 45 45 H 1.08994 * 110.48679 * 98.42860 * 24 10 9 46 46 H 1.08994 * 109.54229 * 302.97654 * 27 25 4 47 47 H 1.08994 * 109.54527 * 63.24293 * 27 25 4 48 48 H 1.08998 * 109.47359 * 296.97951 * 28 27 25 49 49 H 1.09005 * 109.57356 * 176.85023 * 28 27 25 50 50 H 1.09006 * 109.47841 * 182.43862 * 29 28 27 51 51 H 1.09004 * 109.48203 * 62.40896 * 29 28 27 52 52 H 1.08994 * 109.48316 * 178.86178 * 31 30 29 53 53 H 1.09003 * 109.49163 * 58.83249 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.9784 2.1766 -0.0902 6 7 3.9766 0.5640 1.2509 7 6 4.1663 1.3223 2.3489 8 8 3.9708 2.5213 2.3008 9 7 4.5717 0.7512 3.5004 10 6 4.7773 1.5753 4.6940 11 1 5.1658 2.5535 4.4105 12 6 3.4516 1.7360 5.4584 13 6 3.6738 1.1284 6.8588 14 6 5.2069 1.2029 7.0663 15 1 5.5066 2.2042 7.3755 16 6 5.6601 0.1772 8.0731 17 1 6.3530 -0.5977 7.7800 18 6 5.1900 0.2279 9.3683 19 7 4.3466 1.1717 9.7252 20 14 5.7513 -1.0439 10.6160 21 1 6.9738 -0.5566 11.3040 22 1 4.6756 -1.2650 11.6156 23 1 6.0508 -2.3213 9.9204 24 6 5.7590 0.8755 5.6566 25 6 3.9780 0.3199 -1.1826 26 1 3.5355 -0.6723 -1.0938 27 6 5.5052 0.2007 -1.1862 28 6 5.9408 -0.5999 -2.4173 29 6 5.4072 0.0849 -3.6783 30 8 3.9845 0.1902 -3.5958 31 6 3.5202 0.9690 -2.4914 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.3634 0.5138 -0.8899 35 1 1.6885 1.8464 0.8900 36 1 1.6885 1.8464 -0.8899 37 1 4.1323 -0.3926 1.2892 38 1 4.7273 -0.2055 3.5387 39 1 3.1967 2.7922 5.5458 40 1 2.6551 1.2012 4.9410 41 1 3.1572 1.7173 7.6166 42 1 3.3333 0.0932 6.8839 43 1 4.0162 1.2076 10.6365 44 1 5.7574 -0.2012 5.4868 45 1 6.7640 1.2800 5.5371 46 1 5.9484 1.1958 -1.2238 47 1 5.8330 -0.3119 -0.2819 48 1 5.5389 -1.6111 -2.3541 49 1 7.0293 -0.6425 -2.4588 50 1 5.6779 -0.5047 -4.5543 51 1 5.8413 1.0812 -3.7623 52 1 2.4315 1.0164 -2.5121 53 1 3.9293 1.9771 -2.5597 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884387182.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:48 Heat of formation + Delta-G solvation = -165.196062 kcal Electronic energy + Delta-G solvation = -30926.506673 eV Core-core repulsion = 26796.380975 eV Total energy + Delta-G solvation = -4130.125697 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.48352 -40.40468 -39.06696 -38.52670 -36.47734 -35.25488 -34.19391 -33.66797 -32.47230 -29.98119 -29.67905 -28.50217 -27.03922 -26.04009 -25.61618 -25.08070 -22.72827 -21.75941 -21.27826 -21.18277 -20.79073 -19.24876 -18.50712 -17.88799 -17.35131 -16.92693 -16.85496 -16.73658 -16.54394 -16.40292 -16.14054 -15.70624 -15.56867 -15.44328 -15.33389 -14.71834 -14.46243 -14.14621 -14.01025 -13.61448 -13.57032 -13.46904 -13.21655 -13.01240 -12.87902 -12.78737 -12.53664 -12.44121 -12.40171 -12.09780 -12.08056 -11.88106 -11.65456 -11.46604 -11.37497 -11.25578 -11.21751 -11.05261 -10.79511 -10.60711 -10.45093 -10.41366 -10.26364 -9.69913 -8.08661 -6.18999 1.43627 1.44502 1.54158 1.72889 2.20508 2.45811 2.85049 2.94019 3.22212 3.31016 3.60165 3.74590 3.89548 3.95392 4.05794 4.07209 4.18358 4.22901 4.23242 4.28525 4.37584 4.49531 4.51167 4.54046 4.62844 4.67115 4.71098 4.74366 4.79883 4.82335 4.87373 4.93803 4.96465 5.04751 5.06438 5.09075 5.13512 5.17998 5.22215 5.32347 5.40087 5.43439 5.55414 5.67794 5.72921 5.94661 6.01380 6.07782 6.18579 6.27434 6.38863 6.91698 7.16011 7.48739 7.65280 8.99801 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.017723 B = 0.002226 C = 0.002107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.470675 B =12572.970304 C =13282.808008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.395 6.395 3 C 0.047 3.953 4 C 0.180 3.820 5 H 0.091 0.909 6 N -0.722 5.722 7 C 0.702 3.298 8 O -0.635 6.635 9 N -0.725 5.725 10 C 0.172 3.828 11 H 0.069 0.931 12 C -0.123 4.123 13 C -0.089 4.089 14 C 0.041 3.959 15 H 0.000 1.000 16 C -0.527 4.527 17 H 0.059 0.941 18 C 0.010 3.990 19 N -0.921 5.921 20 Si 0.954 3.046 21 H -0.278 1.278 22 H -0.288 1.288 23 H -0.264 1.264 24 C -0.106 4.106 25 C -0.112 4.112 26 H 0.090 0.910 27 C -0.117 4.117 28 C -0.151 4.151 29 C 0.052 3.948 30 O -0.397 6.397 31 C 0.070 3.930 32 H 0.097 0.903 33 H 0.033 0.967 34 H 0.055 0.945 35 H 0.032 0.968 36 H 0.077 0.923 37 H 0.408 0.592 38 H 0.407 0.593 39 H 0.048 0.952 40 H 0.057 0.943 41 H 0.037 0.963 42 H 0.036 0.964 43 H 0.259 0.741 44 H 0.073 0.927 45 H 0.062 0.938 46 H 0.061 0.939 47 H 0.070 0.930 48 H 0.069 0.931 49 H 0.086 0.914 50 H 0.105 0.895 51 H 0.056 0.944 52 H 0.100 0.900 53 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.882 -4.335 -28.029 28.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.314 6.314 3 C -0.031 4.031 4 C 0.074 3.926 5 H 0.109 0.891 6 N -0.377 5.377 7 C 0.402 3.598 8 O -0.517 6.517 9 N -0.380 5.380 10 C 0.067 3.933 11 H 0.088 0.912 12 C -0.162 4.162 13 C -0.127 4.127 14 C 0.022 3.978 15 H 0.018 0.982 16 C -0.565 4.565 17 H 0.078 0.922 18 C -0.189 4.189 19 N -0.560 5.560 20 Si 0.779 3.221 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.189 1.189 24 C -0.144 4.144 25 C -0.131 4.131 26 H 0.108 0.892 27 C -0.155 4.155 28 C -0.189 4.189 29 C -0.024 4.024 30 O -0.316 6.316 31 C -0.007 4.007 32 H 0.115 0.885 33 H 0.051 0.949 34 H 0.073 0.927 35 H 0.051 0.949 36 H 0.095 0.905 37 H 0.244 0.756 38 H 0.243 0.757 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.056 0.944 42 H 0.055 0.945 43 H 0.068 0.932 44 H 0.092 0.908 45 H 0.081 0.919 46 H 0.080 0.920 47 H 0.088 0.912 48 H 0.088 0.912 49 H 0.104 0.896 50 H 0.123 0.877 51 H 0.074 0.926 52 H 0.118 0.882 53 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.159 -3.445 -28.067 28.360 hybrid contribution 0.028 -0.695 1.632 1.774 sum -2.131 -4.140 -26.435 26.842 Atomic orbital electron populations 1.22868 0.80144 1.03622 1.00309 1.87830 1.20690 1.27410 1.95466 1.23039 0.94113 0.85239 1.00671 1.20815 0.91538 0.97728 0.82539 0.89138 1.44902 1.72742 1.11190 1.08856 1.16114 0.77747 0.84994 0.80903 1.90870 1.60623 1.15030 1.85162 1.45231 1.72181 1.11695 1.08854 1.21295 0.94906 0.94011 0.83129 0.91236 1.22525 0.97275 0.99857 0.96549 1.22067 0.99128 0.98051 0.93479 1.19527 0.92111 0.94860 0.91332 0.98212 1.21482 1.26617 1.13126 0.95320 0.92249 1.25784 0.95196 0.97522 1.00381 1.70105 1.32799 1.34449 1.18664 0.85623 0.77707 0.79868 0.78853 1.20346 1.21370 1.18866 1.22550 0.97183 1.00133 0.94499 1.21846 0.96914 1.00768 0.93579 0.89183 1.21637 0.94081 1.00869 0.98900 1.22161 1.02083 0.99953 0.94656 1.22773 0.80404 1.00598 0.98618 1.87934 1.22672 1.73280 1.47746 1.22614 1.00232 0.93617 0.84287 0.88501 0.94877 0.92673 0.94917 0.90495 0.75558 0.75677 0.93296 0.92436 0.94447 0.94479 0.93235 0.90802 0.91933 0.92015 0.91156 0.91209 0.89563 0.87702 0.92576 0.88239 0.92315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 113.37 1.25 1.66 16 2 O -0.39 -7.67 9.77 -148.98 -1.46 -9.12 16 3 C 0.05 0.92 5.24 71.98 0.38 1.29 16 4 C 0.18 3.40 1.95 44.99 0.09 3.49 16 5 H 0.09 1.95 7.58 -2.39 -0.02 1.93 16 6 N -0.72 -15.29 4.39 -457.81 -2.01 -17.30 16 7 C 0.70 20.76 8.52 179.05 1.53 22.29 16 8 O -0.64 -23.96 15.68 -3.98 -0.06 -24.03 16 9 N -0.73 -20.90 5.00 -454.34 -2.27 -23.17 16 10 C 0.17 6.18 3.22 45.72 0.15 6.33 16 11 H 0.07 2.68 7.61 -2.39 -0.02 2.66 16 12 C -0.12 -4.90 6.59 31.32 0.21 -4.70 16 13 C -0.09 -4.21 5.57 31.67 0.18 -4.03 16 14 C 0.04 2.00 2.81 -10.25 -0.03 1.97 16 15 H 0.00 -0.02 8.14 -2.38 -0.02 -0.04 16 16 C -0.53 -28.30 8.56 25.60 0.22 -28.08 16 17 H 0.06 3.06 7.79 -2.91 -0.02 3.04 16 18 C 0.01 0.54 5.33 84.66 0.45 0.99 16 19 N -0.92 -53.68 12.02 21.45 0.26 -53.42 16 20 Si 0.95 43.11 29.54 68.60 2.03 45.14 16 21 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 22 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 23 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 24 C -0.11 -4.05 5.95 31.67 0.19 -3.86 16 25 C -0.11 -1.65 1.82 -10.70 -0.02 -1.67 16 26 H 0.09 1.49 7.56 -2.39 -0.02 1.47 16 27 C -0.12 -1.60 5.11 30.72 0.16 -1.45 16 28 C -0.15 -1.72 6.13 30.69 0.19 -1.53 16 29 C 0.05 0.63 6.84 72.01 0.49 1.12 16 30 O -0.40 -6.66 10.77 -148.98 -1.60 -8.26 16 31 C 0.07 1.00 5.71 72.01 0.41 1.41 16 32 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.08 1.14 6.77 -2.39 -0.02 1.13 16 37 H 0.41 6.90 8.42 -92.71 -0.78 6.12 16 38 H 0.41 9.53 8.36 -92.71 -0.77 8.75 16 39 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.06 2.18 7.92 -2.39 -0.02 2.16 16 41 H 0.04 1.97 7.37 -2.39 -0.02 1.96 16 42 H 0.04 1.78 8.05 -2.39 -0.02 1.76 16 43 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 44 H 0.07 2.64 7.63 -2.38 -0.02 2.62 16 45 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 46 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 47 H 0.07 0.98 7.57 -2.39 -0.02 0.96 16 48 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 49 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 50 H 0.10 0.97 8.14 -2.38 -0.02 0.95 16 51 H 0.06 0.60 8.14 -2.38 -0.02 0.59 16 52 H 0.10 1.33 6.69 -2.39 -0.02 1.31 16 53 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 Total: -1.00 -67.91 412.31 0.05 -67.86 By element: Atomic # 1 Polarization: 27.75 SS G_CDS: -0.66 Total: 27.09 kcal Atomic # 6 Polarization: -10.62 SS G_CDS: 5.83 Total: -4.79 kcal Atomic # 7 Polarization: -89.87 SS G_CDS: -4.02 Total: -93.89 kcal Atomic # 8 Polarization: -38.29 SS G_CDS: -3.12 Total: -41.41 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -67.91 0.05 -67.86 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884387182.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.334 kcal (2) G-P(sol) polarization free energy of solvation -67.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds