Wall clock time and date at job start Sat Apr 11 2020 06:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 113.99885 * 2 1 4 4 C 1.53004 * 108.79527 * 53.39786 * 3 2 1 5 5 N 1.46497 * 109.47078 * 60.24862 * 4 3 2 6 6 C 1.34779 * 119.99928 * 174.67980 * 5 4 3 7 7 O 1.21585 * 119.99779 * 359.97438 * 6 5 4 8 8 N 1.34775 * 120.00080 * 179.97438 * 6 5 4 9 9 C 1.47430 * 125.64840 * 359.68628 * 8 6 5 10 10 C 1.55131 * 104.72378 * 155.81548 * 9 8 6 11 11 C 1.55164 * 101.48174 * 37.30079 * 10 9 8 12 12 O 1.42895 * 110.72269 * 82.69588 * 11 10 9 13 13 C 1.50702 * 110.86878 * 205.90163 * 11 10 9 14 14 H 1.08000 * 120.00231 * 355.06005 * 13 11 10 15 15 C 1.37881 * 119.99673 * 175.06788 * 13 11 10 16 16 N 1.31508 * 120.00201 * 359.97438 * 15 13 11 17 17 Si 1.86804 * 119.99755 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47145 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47245 * 119.99665 * 17 15 13 20 20 H 1.48500 * 109.46691 * 239.99409 * 17 15 13 21 21 C 1.47023 * 125.65142 * 179.97438 * 8 6 5 22 22 C 1.54245 * 108.89606 * 171.95391 * 3 2 1 23 23 C 1.50479 * 108.52375 * 40.77076 * 22 3 2 24 24 C 1.54061 * 112.49721 * 94.14961 * 23 22 3 25 25 C 1.54062 * 112.81836 * 318.28320 * 24 23 22 26 26 C 1.50467 * 112.49656 * 318.28577 * 25 24 23 27 27 C 1.45545 * 108.89597 * 294.83749 * 3 2 1 28 28 H 1.09000 * 109.47511 * 174.69521 * 1 2 3 29 29 H 1.08999 * 109.47095 * 294.69849 * 1 2 3 30 30 H 1.09003 * 109.47012 * 54.69416 * 1 2 3 31 31 H 1.08995 * 109.47242 * 180.25203 * 4 3 2 32 32 H 1.08998 * 109.46497 * 300.25178 * 4 3 2 33 33 H 0.97000 * 120.00383 * 354.67360 * 5 4 3 34 34 H 1.08994 * 110.36690 * 274.75147 * 9 8 6 35 35 H 1.09007 * 110.36076 * 37.07283 * 9 8 6 36 36 H 1.09001 * 111.19345 * 279.19851 * 10 9 8 37 37 H 1.08994 * 110.90698 * 155.27581 * 10 9 8 38 38 H 0.96701 * 113.99879 * 185.02544 * 12 11 10 39 39 H 0.97003 * 120.00545 * 179.97438 * 16 15 13 40 40 H 1.09007 * 109.87760 * 300.44066 * 21 8 6 41 41 H 1.08993 * 109.88236 * 61.44377 * 21 8 6 42 42 H 1.08997 * 109.63124 * 160.48175 * 22 3 2 43 43 H 1.09003 * 109.62625 * 281.06124 * 22 3 2 44 44 H 1.09004 * 108.87226 * 333.37172 * 23 22 3 45 45 H 1.08994 * 108.87208 * 214.93028 * 23 22 3 46 46 H 1.09000 * 108.81029 * 197.42036 * 24 23 22 47 47 H 1.09002 * 108.81112 * 79.14789 * 24 23 22 48 48 H 1.09005 * 108.87931 * 197.50870 * 25 24 23 49 49 H 1.09000 * 108.87586 * 79.06697 * 25 24 23 50 50 H 1.08996 * 109.63103 * 334.44336 * 26 25 24 51 51 H 1.09000 * 109.78997 * 213.95744 * 26 25 24 52 52 H 1.08994 * 108.89543 * 61.94086 * 27 3 2 53 53 H 1.09002 * 108.89376 * 180.42770 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.4217 2.1071 1.1628 5 7 1.7291 1.4322 2.4262 6 6 1.4022 2.0132 3.5975 7 8 0.8526 3.0977 3.6056 8 7 1.6846 1.3921 4.7598 9 6 2.3392 0.0780 4.8949 10 6 2.9808 0.1004 6.3072 11 6 1.9103 0.8752 7.1204 12 8 0.8613 -0.0003 7.5386 13 6 2.5326 1.5638 8.3078 14 1 3.5770 1.4094 8.5354 15 6 1.7685 2.3908 9.1036 16 7 0.4969 2.5791 8.8263 17 14 2.5397 3.2437 10.5758 18 1 3.9734 2.8687 10.6702 19 1 2.4222 4.7151 10.4130 20 1 1.8363 2.8250 11.8148 21 6 1.3855 1.9100 6.1029 22 6 3.5334 1.1741 0.2043 23 6 4.0254 0.0055 -0.6060 24 6 4.5367 0.4262 -1.9971 25 6 3.6380 1.4811 -2.6701 26 6 2.1731 1.1928 -2.4838 27 6 1.6735 1.9713 -1.2496 28 1 -0.3634 -1.0232 -0.0950 29 1 -0.3633 0.4294 0.9336 30 1 -0.3633 0.5940 -0.8387 31 1 1.8546 3.1073 1.1705 32 1 0.3407 2.1799 1.0435 33 1 2.1679 0.5671 2.4197 34 1 1.6024 -0.7220 4.8230 35 1 3.1078 -0.0431 4.1315 36 1 3.9299 0.6364 6.3003 37 1 3.1078 -0.9111 6.6927 38 1 0.1292 0.4476 7.9841 39 1 -0.0408 3.1606 9.3863 40 1 1.8888 2.8654 6.2523 41 1 0.3093 2.0359 6.2205 42 1 4.0278 2.0860 -0.1307 43 1 3.7480 1.0044 1.2594 44 1 3.2089 -0.7058 -0.7307 45 1 4.8361 -0.4824 -0.0649 46 1 4.5828 -0.4556 -2.6361 47 1 5.5418 0.8352 -1.8932 48 1 3.8599 1.5046 -3.7371 49 1 3.8621 2.4590 -2.2438 50 1 2.0274 0.1241 -2.3262 51 1 1.6190 1.5115 -3.3667 52 1 0.5905 2.0763 -1.3130 53 1 2.1232 2.9643 -1.2528 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000898936991.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:42 Heat of formation + Delta-G solvation = -148.276212 kcal Electronic energy + Delta-G solvation = -32061.709902 eV Core-core repulsion = 27932.317904 eV Total energy + Delta-G solvation = -4129.391998 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.85647 -40.88700 -39.08577 -37.21921 -36.07532 -35.58169 -34.23102 -33.17132 -32.67752 -31.54950 -29.61889 -28.27132 -27.56224 -26.64436 -25.62725 -24.38705 -23.52340 -21.46039 -21.26944 -20.74041 -20.05196 -19.31385 -18.92021 -17.68849 -17.46276 -17.00978 -16.85031 -16.58742 -16.40006 -16.19800 -16.03697 -15.38555 -15.12048 -14.90902 -14.76849 -14.63944 -14.20874 -14.09649 -13.96971 -13.69818 -13.53847 -13.49777 -13.46403 -13.18615 -12.99302 -12.87189 -12.63707 -12.53903 -12.34641 -12.25136 -12.09188 -11.93344 -11.80850 -11.42181 -11.35081 -11.31485 -11.17494 -11.05143 -11.00209 -10.66444 -10.49445 -10.29229 -10.25014 -9.40986 -8.26229 -6.41932 1.39755 1.43079 1.53889 1.63244 2.11751 2.37742 2.73248 3.00577 3.11147 3.47784 3.60740 3.79347 3.91297 4.04493 4.10456 4.16913 4.20938 4.28861 4.36966 4.39079 4.42624 4.45677 4.51518 4.51738 4.58248 4.62274 4.69602 4.71677 4.82093 4.94693 4.98514 5.01280 5.04826 5.12204 5.12737 5.23410 5.24654 5.32314 5.35094 5.35682 5.40078 5.42260 5.47210 5.49790 5.57739 5.73638 5.74548 6.02568 6.15366 6.25281 6.65138 7.03445 7.27441 7.34973 7.54059 8.80066 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.022260 B = 0.002545 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.570852 B =10999.041975 C =11137.793732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.376 6.376 3 C 0.127 3.873 4 C 0.109 3.891 5 N -0.720 5.720 6 C 0.710 3.290 7 O -0.645 6.645 8 N -0.635 5.635 9 C 0.109 3.891 10 C -0.109 4.109 11 C 0.233 3.767 12 O -0.587 6.587 13 C -0.555 4.555 14 H 0.068 0.932 15 C 0.024 3.976 16 N -0.916 5.916 17 Si 0.964 3.036 18 H -0.264 1.264 19 H -0.285 1.285 20 H -0.277 1.277 21 C 0.143 3.857 22 C -0.101 4.101 23 C -0.118 4.118 24 C -0.114 4.114 25 C -0.120 4.120 26 C -0.104 4.104 27 C -0.146 4.146 28 H 0.098 0.902 29 H 0.026 0.974 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.409 0.591 34 H 0.069 0.931 35 H 0.097 0.903 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.375 0.625 39 H 0.269 0.731 40 H 0.029 0.971 41 H 0.026 0.974 42 H 0.082 0.918 43 H 0.062 0.938 44 H 0.076 0.924 45 H 0.060 0.940 46 H 0.061 0.939 47 H 0.059 0.941 48 H 0.065 0.935 49 H 0.059 0.941 50 H 0.070 0.930 51 H 0.071 0.929 52 H 0.069 0.931 53 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.812 -6.337 -23.866 25.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.295 6.295 3 C 0.087 3.913 4 C -0.015 4.015 5 N -0.378 5.378 6 C 0.412 3.588 7 O -0.528 6.528 8 N -0.371 5.371 9 C -0.013 4.013 10 C -0.147 4.147 11 C 0.193 3.807 12 O -0.394 6.394 13 C -0.593 4.593 14 H 0.086 0.914 15 C -0.177 4.177 16 N -0.555 5.555 17 Si 0.789 3.211 18 H -0.188 1.188 19 H -0.211 1.211 20 H -0.203 1.203 21 C 0.019 3.981 22 C -0.139 4.139 23 C -0.155 4.155 24 C -0.151 4.151 25 C -0.157 4.157 26 C -0.141 4.141 27 C -0.184 4.184 28 H 0.116 0.884 29 H 0.045 0.955 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.246 0.754 34 H 0.087 0.913 35 H 0.116 0.884 36 H 0.103 0.897 37 H 0.109 0.891 38 H 0.224 0.776 39 H 0.078 0.922 40 H 0.047 0.953 41 H 0.045 0.955 42 H 0.101 0.899 43 H 0.081 0.919 44 H 0.094 0.906 45 H 0.078 0.922 46 H 0.080 0.920 47 H 0.077 0.923 48 H 0.084 0.916 49 H 0.077 0.923 50 H 0.089 0.911 51 H 0.090 0.910 52 H 0.088 0.912 53 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.753 -6.058 -24.161 25.565 hybrid contribution -0.681 1.281 1.547 2.121 sum 5.071 -4.777 -22.614 23.663 Atomic orbital electron populations 1.22881 0.81096 1.03574 0.99993 1.87942 1.19815 1.26862 1.94898 1.20372 0.94971 0.83316 0.92612 1.22028 1.00256 0.96792 0.82463 1.44824 1.65510 1.24362 1.03086 1.15745 0.79358 0.83157 0.80582 1.90842 1.51365 1.23614 1.86998 1.47885 1.62711 1.21875 1.04671 1.22414 0.96474 0.83917 0.98469 1.22752 0.97424 1.01529 0.93000 1.19719 0.84996 0.85830 0.90151 1.86094 1.34321 1.39358 1.79661 1.21851 0.97345 1.28157 1.11946 0.91417 1.25833 0.95365 0.96198 1.00282 1.69817 1.07234 1.38477 1.39972 0.85417 0.79032 0.77740 0.78911 1.18780 1.21081 1.20308 1.22338 0.97900 0.97886 0.80002 1.21389 0.91018 1.00800 1.00653 1.21184 1.01174 0.97860 0.95321 1.21893 0.98758 0.98904 0.95589 1.21356 0.94669 0.99061 1.00622 1.21150 0.96006 1.00898 0.96088 1.21043 1.02370 1.00451 0.94538 0.88402 0.95499 0.92460 0.91685 0.92446 0.75376 0.91273 0.88441 0.89741 0.89103 0.77626 0.92154 0.95270 0.95524 0.89909 0.91927 0.90551 0.92165 0.92022 0.92259 0.91586 0.92275 0.91122 0.91040 0.91238 0.90255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 10.00 113.37 1.13 1.49 16 2 O -0.38 -6.94 7.07 -148.98 -1.05 -7.99 16 3 C 0.13 2.27 0.34 -12.65 0.00 2.27 16 4 C 0.11 2.74 3.88 86.38 0.34 3.08 16 5 N -0.72 -21.29 4.77 -478.54 -2.28 -23.57 16 6 C 0.71 29.30 8.49 179.05 1.52 30.82 16 7 O -0.65 -32.58 16.66 -3.98 -0.07 -32.64 16 8 N -0.63 -26.67 3.33 -829.30 -2.76 -29.43 16 9 C 0.11 3.64 6.58 86.93 0.57 4.21 16 10 C -0.11 -4.17 6.24 32.07 0.20 -3.97 16 11 C 0.23 11.41 0.85 -10.35 -0.01 11.40 16 12 O -0.59 -29.87 13.07 -148.98 -1.95 -31.81 16 13 C -0.55 -29.32 8.13 25.60 0.21 -29.11 16 14 H 0.07 3.48 7.78 -2.91 -0.02 3.46 16 15 C 0.02 1.28 5.28 84.66 0.45 1.72 16 16 N -0.92 -50.62 10.96 21.45 0.24 -50.39 16 17 Si 0.96 42.53 29.54 68.60 2.03 44.56 16 18 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 19 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 20 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 21 C 0.14 7.29 5.23 86.73 0.45 7.74 16 22 C -0.10 -1.70 4.76 30.20 0.14 -1.56 16 23 C -0.12 -1.74 5.24 30.14 0.16 -1.58 16 24 C -0.11 -1.39 5.85 31.31 0.18 -1.21 16 25 C -0.12 -1.37 5.31 30.13 0.16 -1.21 16 26 C -0.10 -1.27 5.57 30.19 0.17 -1.10 16 27 C -0.15 -2.13 3.71 28.74 0.11 -2.03 16 28 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.03 0.58 6.59 -2.39 -0.02 0.56 16 30 H 0.06 0.82 6.29 -2.39 -0.01 0.81 16 31 H 0.06 1.77 8.13 -2.39 -0.02 1.75 16 32 H 0.06 1.54 6.50 -2.39 -0.02 1.53 16 33 H 0.41 10.30 5.79 -92.71 -0.54 9.76 16 34 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.10 2.45 7.29 -2.38 -0.02 2.43 16 36 H 0.08 3.08 8.04 -2.39 -0.02 3.06 16 37 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 38 H 0.37 19.99 7.45 -74.06 -0.55 19.44 16 39 H 0.27 14.24 8.31 -92.71 -0.77 13.47 16 40 H 0.03 1.65 7.82 -2.38 -0.02 1.63 16 41 H 0.03 1.51 7.92 -2.39 -0.02 1.49 16 42 H 0.08 1.30 6.98 -2.39 -0.02 1.29 16 43 H 0.06 1.18 6.52 -2.39 -0.02 1.17 16 44 H 0.08 1.27 5.47 -2.38 -0.01 1.26 16 45 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 46 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 47 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 48 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 49 H 0.06 0.70 6.63 -2.39 -0.02 0.69 16 50 H 0.07 0.98 6.25 -2.39 -0.01 0.97 16 51 H 0.07 0.74 8.14 -2.39 -0.02 0.73 16 52 H 0.07 1.00 6.36 -2.39 -0.02 0.98 16 53 H 0.08 1.11 7.47 -2.39 -0.02 1.09 16 Total: -1.00 -66.59 390.88 -0.23 -66.83 By element: Atomic # 1 Polarization: 43.65 SS G_CDS: -0.17 Total: 43.48 kcal Atomic # 6 Polarization: 15.18 SS G_CDS: 5.78 Total: 20.96 kcal Atomic # 7 Polarization: -98.58 SS G_CDS: -4.80 Total: -103.38 kcal Atomic # 8 Polarization: -69.38 SS G_CDS: -3.07 Total: -72.45 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Total: -66.59 -0.23 -66.83 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898936991.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.450 kcal (2) G-P(sol) polarization free energy of solvation -66.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds