Wall clock time and date at job start Sat Apr 11 2020 06:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46497 * 120.00377 * 2 1 4 4 C 1.50700 * 109.47345 * 270.00634 * 3 2 1 5 5 H 1.07999 * 120.00232 * 359.97438 * 4 3 2 6 6 C 1.37881 * 119.99876 * 180.27104 * 4 3 2 7 7 N 1.31517 * 119.99570 * 179.72402 * 6 4 3 8 8 Si 1.86797 * 120.00290 * 359.72560 * 6 4 3 9 9 H 1.48500 * 109.47188 * 89.99589 * 8 6 4 10 10 H 1.48490 * 109.47249 * 209.99784 * 8 6 4 11 11 H 1.48500 * 109.46849 * 330.00148 * 8 6 4 12 12 C 1.34776 * 119.99772 * 180.02562 * 2 1 3 13 13 O 1.21280 * 119.99938 * 179.97438 * 12 2 1 14 14 C 1.50698 * 120.00277 * 359.97438 * 12 2 1 15 15 C 1.52995 * 109.47526 * 180.02562 * 14 12 2 16 16 N 1.46905 * 109.47332 * 179.97438 * 15 14 12 17 17 C 1.47013 * 110.99739 * 52.67306 * 16 15 14 18 18 C 1.53101 * 109.25257 * 182.39156 * 17 16 15 19 19 O 1.43008 * 109.26218 * 303.15009 * 18 17 16 20 20 C 1.43022 * 113.73703 * 58.67138 * 19 18 17 21 21 C 1.47016 * 110.99706 * 176.30908 * 16 15 14 22 22 H 1.08999 * 109.50507 * 297.54019 * 21 16 15 23 23 C 1.52993 * 109.51081 * 57.67241 * 21 16 15 24 24 C 1.53002 * 109.47148 * 66.96805 * 23 21 16 25 25 H 1.08995 * 110.45593 * 51.59371 * 24 23 21 26 26 C 1.54506 * 110.51022 * 174.20283 * 24 23 21 27 27 C 1.54478 * 104.06437 * 118.64666 * 26 24 23 28 28 O 1.44418 * 104.80574 * 23.97609 * 27 26 24 29 29 C 1.44429 * 105.27383 * 319.49154 * 28 27 26 30 30 H 1.08993 * 109.47653 * 89.99294 * 1 2 3 31 31 H 1.08998 * 109.46883 * 209.99715 * 1 2 3 32 32 H 1.09007 * 109.46689 * 329.99634 * 1 2 3 33 33 H 1.08998 * 109.47308 * 150.00564 * 3 2 1 34 34 H 1.09005 * 109.47027 * 30.00426 * 3 2 1 35 35 H 0.97005 * 119.99510 * 180.02562 * 7 6 4 36 36 H 1.09009 * 109.46762 * 300.00129 * 14 12 2 37 37 H 1.09003 * 109.46942 * 59.99610 * 14 12 2 38 38 H 1.09009 * 109.47067 * 299.99772 * 15 14 12 39 39 H 1.09003 * 109.47468 * 59.99761 * 15 14 12 40 40 H 1.09003 * 109.50647 * 302.32439 * 17 16 15 41 41 H 1.08992 * 109.50792 * 62.45918 * 17 16 15 42 42 H 1.09000 * 109.50769 * 183.21302 * 18 17 16 43 43 H 1.09008 * 109.54028 * 63.11107 * 18 17 16 44 44 H 1.09002 * 109.50649 * 181.39945 * 20 19 18 45 45 H 1.08998 * 109.54274 * 61.28454 * 20 19 18 46 46 H 1.08994 * 109.47435 * 186.96814 * 23 21 16 47 47 H 1.09004 * 109.47384 * 306.96893 * 23 21 16 48 48 H 1.09004 * 110.51194 * 237.29064 * 26 24 23 49 49 H 1.09003 * 110.51253 * 359.86091 * 26 24 23 50 50 H 1.09005 * 110.37237 * 142.80899 * 27 26 24 51 51 H 1.09002 * 110.37018 * 265.03246 * 27 26 24 52 52 H 1.08998 * 110.37011 * 281.68017 * 29 28 27 53 53 H 1.08997 * 110.37205 * 159.34413 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0980 1.0959 -2.2417 6 6 3.1314 2.8749 -1.6727 7 7 3.3552 3.2518 -2.9126 8 14 3.7384 3.9261 -0.2529 9 1 5.1092 3.5001 0.1277 10 1 3.7602 5.3520 -0.6666 11 1 2.8286 3.7615 0.9091 12 6 2.1388 -1.1672 -0.0005 13 8 3.3516 -1.1673 -0.0010 14 6 1.3853 -2.4723 -0.0005 15 6 2.3795 -3.6352 -0.0005 16 7 1.6449 -4.9075 0.0001 17 6 0.6604 -4.9478 -1.0910 18 6 -0.1214 -6.2621 -1.0170 19 8 0.7939 -7.3594 -1.0729 20 6 1.7666 -7.3517 -0.0244 21 6 2.5677 -6.0486 -0.0882 22 1 3.1139 -6.0028 -1.0304 23 6 3.5555 -5.9984 1.0789 24 6 2.8069 -6.2395 2.3914 25 1 2.2022 -7.1438 2.3245 26 6 3.8001 -6.3383 3.5708 27 6 3.4016 -5.1673 4.4963 28 8 2.0177 -4.9017 4.1802 29 6 1.9259 -5.0205 2.7437 30 1 -0.3634 0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 3.1500 1.1383 0.5137 34 1 1.6085 2.0283 0.5139 35 1 3.8359 4.0756 -3.0898 36 1 0.7590 -2.5302 0.8898 37 1 0.7583 -2.5298 -0.8903 38 1 3.0062 -3.5776 -0.8906 39 1 3.0062 -3.5776 0.8894 40 1 -0.0280 -4.1086 -0.9912 41 1 1.1761 -4.8846 -2.0491 42 1 -0.8131 -6.3219 -1.8574 43 1 -0.6805 -6.3016 -0.0821 44 1 2.4406 -8.1996 -0.1469 45 1 1.2637 -7.4228 0.9400 46 1 4.3140 -6.7698 0.9464 47 1 4.0341 -5.0195 1.1082 48 1 3.6847 -7.2905 4.0885 49 1 4.8246 -6.2178 3.2186 50 1 3.5029 -5.4586 5.5418 51 1 4.0155 -4.2915 4.2859 52 1 2.3121 -4.1216 2.2633 53 1 0.8935 -5.1988 2.4429 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933674390.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:04 Heat of formation + Delta-G solvation = -132.558787 kcal Electronic energy + Delta-G solvation = -31973.388374 eV Core-core repulsion = 27844.677935 eV Total energy + Delta-G solvation = -4128.710439 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.54774 -40.59748 -39.80827 -37.32372 -36.61964 -35.30663 -34.71372 -32.50341 -31.97972 -30.43107 -29.90710 -28.27554 -27.30786 -27.07767 -24.87885 -24.36845 -23.14741 -22.98568 -21.87034 -20.24779 -19.95608 -19.18172 -18.24528 -17.67388 -17.24582 -17.11796 -17.07666 -16.74193 -16.46102 -16.25456 -16.17201 -15.76849 -15.57332 -15.32987 -14.93262 -14.77904 -14.57990 -14.38000 -13.89763 -13.80899 -13.65804 -13.59801 -13.51146 -13.38206 -13.22768 -12.88731 -12.77658 -12.58558 -12.37964 -12.29538 -12.23342 -12.11229 -12.01302 -11.77693 -11.71005 -11.48307 -11.43604 -11.17612 -10.85790 -10.69247 -10.59765 -10.40141 -9.44566 -9.41315 -8.36770 -6.41943 1.30895 1.34835 1.43528 1.77025 2.22301 2.28858 2.75566 2.97518 2.97989 3.18119 3.61249 3.65694 3.73184 3.84804 3.94377 3.99171 4.00501 4.08040 4.22548 4.26349 4.30011 4.34040 4.41263 4.44373 4.51451 4.54021 4.59069 4.67035 4.73376 4.74677 4.80150 4.83936 4.86518 4.88532 4.92705 4.93449 4.95044 4.97567 4.98319 5.01553 5.12408 5.17435 5.24476 5.41176 5.43346 5.59954 5.86016 5.95161 5.99205 6.20745 6.22083 6.59008 6.67619 7.18786 7.39339 8.80335 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.012855 B = 0.003038 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2177.580716 B = 9214.486815 C =10390.465247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.608 5.608 3 C 0.223 3.777 4 C -0.537 4.537 5 H 0.026 0.974 6 C 0.010 3.990 7 N -0.946 5.946 8 Si 0.949 3.051 9 H -0.277 1.277 10 H -0.274 1.274 11 H -0.237 1.237 12 C 0.496 3.504 13 O -0.597 6.597 14 C -0.123 4.123 15 C 0.075 3.925 16 N -0.518 5.518 17 C 0.006 3.994 18 C 0.066 3.934 19 O -0.405 6.405 20 C 0.070 3.930 21 C 0.048 3.952 22 H 0.036 0.964 23 C -0.104 4.104 24 C -0.109 4.109 25 H 0.098 0.902 26 C -0.149 4.149 27 C 0.036 3.964 28 O -0.409 6.409 29 C 0.056 3.944 30 H 0.050 0.950 31 H 0.104 0.896 32 H 0.079 0.921 33 H 0.017 0.983 34 H 0.051 0.949 35 H 0.269 0.731 36 H 0.127 0.873 37 H 0.108 0.892 38 H 0.013 0.987 39 H 0.083 0.917 40 H 0.106 0.894 41 H 0.027 0.973 42 H 0.111 0.889 43 H 0.072 0.928 44 H 0.110 0.890 45 H 0.075 0.925 46 H 0.091 0.909 47 H 0.056 0.944 48 H 0.088 0.912 49 H 0.083 0.917 50 H 0.099 0.901 51 H 0.048 0.952 52 H 0.055 0.945 53 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.624 -23.914 12.744 28.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.338 5.338 3 C 0.100 3.900 4 C -0.575 4.575 5 H 0.045 0.955 6 C -0.188 4.188 7 N -0.586 5.586 8 Si 0.772 3.228 9 H -0.202 1.202 10 H -0.199 1.199 11 H -0.160 1.160 12 C 0.285 3.715 13 O -0.479 6.479 14 C -0.163 4.163 15 C -0.053 4.053 16 N -0.243 5.243 17 C -0.122 4.122 18 C -0.011 4.011 19 O -0.324 6.324 20 C -0.007 4.007 21 C -0.061 4.061 22 H 0.054 0.946 23 C -0.141 4.141 24 C -0.127 4.127 25 H 0.116 0.884 26 C -0.187 4.187 27 C -0.041 4.041 28 O -0.328 6.328 29 C -0.020 4.020 30 H 0.069 0.931 31 H 0.122 0.878 32 H 0.097 0.903 33 H 0.035 0.965 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.145 0.855 37 H 0.126 0.874 38 H 0.032 0.968 39 H 0.101 0.899 40 H 0.124 0.876 41 H 0.045 0.955 42 H 0.129 0.871 43 H 0.090 0.910 44 H 0.128 0.872 45 H 0.093 0.907 46 H 0.109 0.891 47 H 0.075 0.925 48 H 0.107 0.893 49 H 0.101 0.899 50 H 0.118 0.882 51 H 0.066 0.934 52 H 0.073 0.927 53 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -7.400 -23.894 13.088 28.231 hybrid contribution 1.435 1.438 -1.129 2.324 sum -5.966 -22.456 11.959 26.132 Atomic orbital electron populations 1.21977 0.77475 1.04661 1.02259 1.47964 1.08535 1.05967 1.71381 1.19351 0.92790 0.82653 0.95214 1.21565 1.36662 1.06877 0.92435 0.95530 1.25881 0.95274 0.98990 0.98679 1.70056 1.42538 1.24697 1.21324 0.85694 0.79550 0.77763 0.79825 1.20238 1.19903 1.16022 1.21327 0.87814 0.86718 0.75621 1.90634 1.16588 1.88225 1.52435 1.21695 0.99069 0.89138 1.06358 1.21811 0.94796 0.87767 1.00889 1.62429 1.16000 1.01200 1.44675 1.23019 0.96132 1.00879 0.92162 1.22783 0.91011 0.83576 1.03680 1.87966 1.45030 1.47672 1.51705 1.22915 0.90631 0.95853 0.91288 1.22368 0.93689 0.92102 0.97923 0.94617 1.21685 0.97049 1.02729 0.92679 1.22500 0.96660 0.99642 0.93939 0.88432 1.23033 1.00099 0.99534 0.96014 1.23514 0.82677 0.97088 1.00814 1.89081 1.27356 1.92345 1.24033 1.23722 1.01683 0.97313 0.79303 0.93121 0.87761 0.90273 0.96461 0.93118 0.92247 0.85499 0.87392 0.96817 0.89860 0.87558 0.95482 0.87113 0.91017 0.87216 0.90711 0.89067 0.92501 0.89332 0.89882 0.88237 0.93415 0.92718 0.88357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.15 10.29 127.77 1.31 3.46 16 2 N -0.61 -24.31 2.86 -851.15 -2.43 -26.75 16 3 C 0.22 10.89 4.27 85.63 0.37 11.26 16 4 C -0.54 -31.93 9.94 25.60 0.25 -31.68 16 5 H 0.03 1.77 8.06 -2.91 -0.02 1.74 16 6 C 0.01 0.58 5.47 84.66 0.46 1.04 16 7 N -0.95 -60.36 13.96 21.45 0.30 -60.06 16 8 Si 0.95 44.78 27.46 68.60 1.88 46.66 16 9 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 10 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 11 H -0.24 -10.00 6.55 99.48 0.65 -9.35 16 12 C 0.50 19.61 7.67 87.66 0.67 20.29 16 13 O -0.60 -29.70 15.56 -3.03 -0.05 -29.75 16 14 C -0.12 -3.17 3.77 29.85 0.11 -3.05 16 15 C 0.08 1.95 2.99 86.30 0.26 2.20 16 16 N -0.52 -9.85 2.85 -870.00 -2.48 -12.33 16 17 C 0.01 0.10 5.15 86.32 0.44 0.55 16 18 C 0.07 0.97 7.01 72.02 0.50 1.47 16 19 O -0.40 -7.51 10.83 -148.98 -1.61 -9.12 16 20 C 0.07 1.03 5.88 72.02 0.42 1.45 16 21 C 0.05 0.85 2.29 44.92 0.10 0.95 16 22 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 23 C -0.10 -1.66 4.31 30.59 0.13 -1.53 16 24 C -0.11 -1.63 2.79 -9.78 -0.03 -1.66 16 25 H 0.10 1.22 5.85 -2.39 -0.01 1.20 16 26 C -0.15 -2.06 6.74 31.61 0.21 -1.85 16 27 C 0.04 0.65 7.63 72.48 0.55 1.20 16 28 O -0.41 -9.64 11.65 -148.98 -1.74 -11.38 16 29 C 0.06 1.11 5.61 72.48 0.41 1.51 16 30 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.10 1.92 6.44 -2.39 -0.02 1.90 16 32 H 0.08 2.01 7.89 -2.38 -0.02 1.99 16 33 H 0.02 0.91 6.84 -2.39 -0.02 0.90 16 34 H 0.05 2.27 6.96 -2.38 -0.02 2.25 16 35 H 0.27 15.89 8.31 -92.70 -0.77 15.12 16 36 H 0.13 2.52 7.40 -2.38 -0.02 2.50 16 37 H 0.11 2.43 6.24 -2.39 -0.01 2.41 16 38 H 0.01 0.44 8.10 -2.38 -0.02 0.42 16 39 H 0.08 2.33 4.32 -2.39 -0.01 2.32 16 40 H 0.11 1.55 6.07 -2.39 -0.01 1.54 16 41 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 42 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 44 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 45 H 0.07 0.96 5.96 -2.39 -0.01 0.95 16 46 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 47 H 0.06 1.17 6.00 -2.38 -0.01 1.16 16 48 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 49 H 0.08 1.05 7.73 -2.39 -0.02 1.03 16 50 H 0.10 1.48 8.14 -2.38 -0.02 1.46 16 51 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 52 H 0.05 1.27 4.56 -2.39 -0.01 1.26 16 53 H 0.10 1.85 7.92 -2.39 -0.02 1.83 16 Total: -1.00 -80.37 393.80 0.91 -79.45 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: 0.84 Total: 17.65 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: 6.19 Total: 5.62 kcal Atomic # 7 Polarization: -94.52 SS G_CDS: -4.61 Total: -99.13 kcal Atomic # 8 Polarization: -46.86 SS G_CDS: -3.40 Total: -50.25 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 1.88 Total: 46.66 kcal Total: -80.37 0.91 -79.45 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933674390.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.104 kcal (2) G-P(sol) polarization free energy of solvation -80.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds