Wall clock time and date at job start Sat Apr 11 2020 06:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46493 * 120.00344 * 2 1 4 4 C 1.50703 * 109.47184 * 269.99802 * 3 2 1 5 5 H 1.08000 * 119.99609 * 359.97438 * 4 3 2 6 6 C 1.37877 * 120.00319 * 179.97438 * 4 3 2 7 7 N 1.31515 * 120.00441 * 180.02562 * 6 4 3 8 8 Si 1.86805 * 119.99950 * 359.97438 * 6 4 3 9 9 H 1.48507 * 109.46672 * 90.00254 * 8 6 4 10 10 H 1.48492 * 109.47466 * 210.00057 * 8 6 4 11 11 H 1.48496 * 109.47047 * 330.00677 * 8 6 4 12 12 C 1.34781 * 119.99841 * 179.97438 * 2 1 3 13 13 O 1.21285 * 119.99875 * 180.02562 * 12 2 1 14 14 C 1.50697 * 119.99961 * 0.02562 * 12 2 1 15 15 C 1.53004 * 109.46893 * 180.02562 * 14 12 2 16 16 N 1.46897 * 109.46856 * 180.02562 * 15 14 12 17 17 C 1.47014 * 111.00157 * 294.57941 * 16 15 14 18 18 C 1.53101 * 109.25730 * 177.61047 * 17 16 15 19 19 O 1.43019 * 109.25952 * 56.84401 * 18 17 16 20 20 C 1.43007 * 113.74041 * 301.33444 * 19 18 17 21 21 C 1.47025 * 110.99757 * 170.94127 * 16 15 14 22 22 H 1.09007 * 109.50005 * 62.42008 * 21 16 15 23 23 C 1.52995 * 109.50656 * 302.33116 * 21 16 15 24 24 C 1.53003 * 109.46868 * 300.36554 * 23 21 16 25 25 H 1.08994 * 110.55496 * 308.58017 * 24 23 21 26 26 C 1.55000 * 110.61589 * 185.70096 * 24 23 21 27 27 C 1.54802 * 102.09292 * 204.32044 * 26 24 23 28 28 C 1.54101 * 104.18810 * 20.88162 * 27 26 24 29 29 O 1.43742 * 107.41783 * 1.95520 * 28 27 26 30 30 H 1.08994 * 109.47436 * 270.00243 * 1 2 3 31 31 H 1.08997 * 109.46910 * 30.00731 * 1 2 3 32 32 H 1.09007 * 109.46644 * 150.00060 * 1 2 3 33 33 H 1.09008 * 109.47218 * 29.99545 * 3 2 1 34 34 H 1.09000 * 109.47843 * 149.99442 * 3 2 1 35 35 H 0.96996 * 120.00526 * 179.97438 * 7 6 4 36 36 H 1.08998 * 109.47126 * 60.00336 * 14 12 2 37 37 H 1.08995 * 109.47184 * 300.00006 * 14 12 2 38 38 H 1.08998 * 109.47058 * 60.00174 * 15 14 12 39 39 H 1.09003 * 109.46852 * 300.00084 * 15 14 12 40 40 H 1.09004 * 109.50577 * 297.54154 * 17 16 15 41 41 H 1.08995 * 109.50690 * 57.63233 * 17 16 15 42 42 H 1.08995 * 109.50346 * 176.78556 * 18 17 16 43 43 H 1.08998 * 109.50461 * 296.91592 * 18 17 16 44 44 H 1.08998 * 109.50715 * 298.73076 * 20 19 18 45 45 H 1.09007 * 109.50575 * 178.60513 * 20 19 18 46 46 H 1.09004 * 109.46720 * 180.37219 * 23 21 16 47 47 H 1.08995 * 109.47446 * 60.36859 * 23 21 16 48 48 H 1.08999 * 110.90526 * 86.12304 * 26 24 23 49 49 H 1.09000 * 110.93899 * 322.53901 * 26 24 23 50 50 H 1.09005 * 110.48984 * 262.20561 * 27 26 24 51 51 H 1.09001 * 110.60015 * 139.61542 * 27 26 24 52 52 H 1.09001 * 109.87939 * 121.45161 * 28 27 26 53 53 H 1.08999 * 109.88088 * 242.45419 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4488 1.7036 -1.4208 5 1 2.0982 1.0956 -2.2417 6 6 3.1262 2.8778 -1.6728 7 7 3.3450 3.2577 -2.9128 8 14 3.7319 3.9298 -0.2530 9 1 5.1053 3.5090 0.1240 10 1 3.7469 5.3564 -0.6651 11 1 2.8253 3.7602 0.9107 12 6 2.1389 -1.1673 0.0005 13 8 3.3517 -1.1673 0.0010 14 6 1.3853 -2.4723 0.0005 15 6 2.3796 -3.6353 0.0018 16 7 1.6451 -4.9074 0.0012 17 6 0.8858 -5.0780 1.2485 18 6 0.0905 -6.3845 1.1808 19 8 0.9883 -7.4714 0.9403 20 6 1.7436 -7.3381 -0.2667 21 6 2.5558 -6.0415 -0.2137 22 1 3.2722 -6.0932 0.6062 23 6 3.3038 -5.8527 -1.5349 24 6 2.2969 -5.7730 -2.6842 25 1 1.6074 -6.6163 -2.6480 26 6 3.0296 -5.7253 -4.0493 27 6 1.9829 -5.0321 -4.9550 28 6 1.0555 -4.2981 -3.9671 29 8 1.5713 -4.5233 -2.6444 30 1 -0.3634 0.0000 1.0276 31 1 -0.3633 0.8899 -0.5139 32 1 -0.3633 -0.8901 -0.5139 33 1 1.6084 2.0284 0.5138 34 1 3.1499 1.1384 0.5139 35 1 3.8212 4.0839 -3.0901 36 1 0.7591 -2.5302 -0.8897 37 1 0.7584 -2.5298 0.8902 38 1 3.0055 -3.5771 0.8923 39 1 3.0070 -3.5779 -0.8877 40 1 1.5752 -5.1149 2.0920 41 1 0.2004 -4.2400 1.3749 42 1 -0.4291 -6.5436 2.1256 43 1 -0.6361 -6.3266 0.3703 44 1 1.0650 -7.3080 -1.1192 45 1 2.4196 -8.1871 -0.3687 46 1 3.9739 -6.6970 -1.6968 47 1 3.8839 -4.9308 -1.4955 48 1 3.2494 -6.7307 -4.4081 49 1 3.9405 -5.1305 -3.9819 50 1 1.4225 -5.7723 -5.5261 51 1 2.4663 -4.3208 -5.6248 52 1 1.0511 -3.2304 -4.1863 53 1 0.0436 -4.6961 -4.0431 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933692751.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:14 Heat of formation + Delta-G solvation = -135.164737 kcal Electronic energy + Delta-G solvation = -32184.393326 eV Core-core repulsion = 28055.569884 eV Total energy + Delta-G solvation = -4128.823441 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.27638 -40.53293 -39.73926 -37.16592 -36.56445 -34.77264 -34.49276 -32.80506 -32.28585 -30.56404 -30.24150 -28.06811 -27.26907 -26.91561 -24.83781 -24.01541 -22.97200 -22.56442 -22.12952 -20.40253 -19.90835 -19.15648 -18.16905 -17.75015 -17.11115 -17.04097 -16.99233 -16.72428 -16.59354 -16.08061 -15.95339 -15.78148 -15.54726 -15.42153 -14.90043 -14.62143 -14.47049 -14.28825 -13.93692 -13.74799 -13.64628 -13.48886 -13.40932 -13.21383 -12.92038 -12.89269 -12.78776 -12.62233 -12.45843 -12.39493 -12.24881 -12.04586 -12.00466 -11.75743 -11.62336 -11.52385 -11.45552 -11.31859 -10.84432 -10.66193 -10.57073 -10.20828 -9.38736 -9.23612 -8.35088 -6.40084 1.30950 1.35213 1.43826 1.81477 2.27971 2.30000 2.83178 2.98959 3.00248 3.12256 3.62951 3.75800 3.83874 3.90043 3.95424 4.03834 4.08587 4.15573 4.17181 4.26628 4.34027 4.38262 4.39896 4.45709 4.52353 4.57238 4.65998 4.69001 4.74959 4.76539 4.80070 4.86160 4.88634 4.92436 4.93341 4.94433 4.98005 4.99533 5.03362 5.03577 5.15964 5.16719 5.23456 5.34261 5.45061 5.62947 6.03593 6.09908 6.21643 6.23531 6.27968 6.60893 6.70855 7.20560 7.43461 8.82029 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.012757 B = 0.003280 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.312712 B = 8535.663148 C = 9796.895079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.608 5.608 3 C 0.223 3.777 4 C -0.536 4.536 5 H 0.026 0.974 6 C 0.011 3.989 7 N -0.945 5.945 8 Si 0.949 3.051 9 H -0.277 1.277 10 H -0.273 1.273 11 H -0.238 1.238 12 C 0.498 3.502 13 O -0.599 6.599 14 C -0.108 4.108 15 C 0.093 3.907 16 N -0.510 5.510 17 C 0.010 3.990 18 C 0.068 3.932 19 O -0.403 6.403 20 C 0.072 3.928 21 C 0.051 3.949 22 H 0.036 0.964 23 C -0.111 4.111 24 C 0.086 3.914 25 H 0.084 0.916 26 C -0.152 4.152 27 C -0.153 4.153 28 C 0.038 3.962 29 O -0.365 6.365 30 H 0.080 0.920 31 H 0.065 0.935 32 H 0.087 0.913 33 H 0.050 0.950 34 H 0.016 0.984 35 H 0.268 0.732 36 H 0.107 0.893 37 H 0.112 0.888 38 H 0.012 0.988 39 H 0.067 0.933 40 H 0.029 0.971 41 H 0.099 0.901 42 H 0.114 0.886 43 H 0.064 0.936 44 H 0.068 0.932 45 H 0.114 0.886 46 H 0.108 0.892 47 H 0.053 0.947 48 H 0.101 0.899 49 H 0.059 0.941 50 H 0.092 0.908 51 H 0.065 0.935 52 H 0.058 0.942 53 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.363 -24.292 4.566 26.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.340 5.340 3 C 0.101 3.899 4 C -0.575 4.575 5 H 0.045 0.955 6 C -0.187 4.187 7 N -0.585 5.585 8 Si 0.771 3.229 9 H -0.203 1.203 10 H -0.198 1.198 11 H -0.161 1.161 12 C 0.287 3.713 13 O -0.481 6.481 14 C -0.147 4.147 15 C -0.035 4.035 16 N -0.235 5.235 17 C -0.118 4.118 18 C -0.009 4.009 19 O -0.321 6.321 20 C -0.005 4.005 21 C -0.058 4.058 22 H 0.054 0.946 23 C -0.149 4.149 24 C 0.029 3.971 25 H 0.102 0.898 26 C -0.190 4.190 27 C -0.190 4.190 28 C -0.040 4.040 29 O -0.284 6.284 30 H 0.099 0.901 31 H 0.083 0.917 32 H 0.105 0.895 33 H 0.068 0.932 34 H 0.034 0.966 35 H 0.077 0.923 36 H 0.125 0.875 37 H 0.130 0.870 38 H 0.030 0.970 39 H 0.086 0.914 40 H 0.047 0.953 41 H 0.117 0.883 42 H 0.132 0.868 43 H 0.082 0.918 44 H 0.086 0.914 45 H 0.132 0.868 46 H 0.127 0.873 47 H 0.072 0.928 48 H 0.120 0.880 49 H 0.078 0.922 50 H 0.111 0.889 51 H 0.084 0.916 52 H 0.076 0.924 53 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.054 -24.151 4.387 26.163 hybrid contribution 1.358 1.400 0.153 1.956 sum -7.697 -22.751 4.540 24.443 Atomic orbital electron populations 1.21954 0.77600 1.03890 1.02908 1.47969 1.08460 1.05931 1.71594 1.19320 0.92659 0.82677 0.95277 1.21563 1.36823 1.06693 0.92388 0.95514 1.25861 0.95255 0.98927 0.98665 1.70049 1.42751 1.24472 1.21269 0.85705 0.79505 0.77798 0.79871 1.20299 1.19795 1.16109 1.21386 0.87786 0.86746 0.75388 1.90616 1.16675 1.88269 1.52535 1.21448 0.98854 0.88972 1.05473 1.21498 0.94155 0.87977 0.99885 1.62181 1.26356 1.00680 1.34323 1.22970 0.98165 1.00370 0.90322 1.22750 0.91134 0.84122 1.02866 1.87943 1.56366 1.44878 1.42955 1.22864 0.94500 0.95876 0.87246 1.22300 0.93987 0.92289 0.97225 0.94555 1.21760 0.97263 1.03099 0.92755 1.23150 0.92465 0.87973 0.93553 0.89838 1.23212 0.98373 1.02246 0.95133 1.22902 0.97481 1.00196 0.98447 1.23155 0.97559 0.99906 0.83353 1.89149 1.71545 1.39925 1.27790 0.90127 0.91659 0.89458 0.93181 0.96581 0.92257 0.87503 0.87029 0.96982 0.91431 0.95273 0.88323 0.86796 0.91759 0.91423 0.86765 0.87335 0.92819 0.88025 0.92219 0.88896 0.91579 0.92385 0.91531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.32 10.24 127.77 1.31 3.63 16 2 N -0.61 -25.65 2.86 -851.13 -2.43 -28.08 16 3 C 0.22 11.25 4.23 85.64 0.36 11.62 16 4 C -0.54 -32.51 9.94 25.60 0.25 -32.25 16 5 H 0.03 1.81 8.06 -2.91 -0.02 1.79 16 6 C 0.01 0.65 5.47 84.65 0.46 1.12 16 7 N -0.95 -60.81 13.96 21.45 0.30 -60.51 16 8 Si 0.95 45.39 27.47 68.60 1.88 47.28 16 9 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 10 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 11 H -0.24 -10.22 6.54 99.48 0.65 -9.57 16 12 C 0.50 21.16 7.67 87.66 0.67 21.83 16 13 O -0.60 -31.54 15.56 -3.04 -0.05 -31.59 16 14 C -0.11 -3.24 4.17 29.85 0.12 -3.11 16 15 C 0.09 2.83 3.22 86.31 0.28 3.11 16 16 N -0.51 -11.83 3.27 -869.98 -2.84 -14.68 16 17 C 0.01 0.19 5.43 86.32 0.47 0.66 16 18 C 0.07 1.10 7.01 72.02 0.50 1.61 16 19 O -0.40 -7.87 10.83 -148.98 -1.61 -9.48 16 20 C 0.07 1.18 6.05 72.01 0.44 1.62 16 21 C 0.05 1.04 2.28 44.92 0.10 1.15 16 22 H 0.04 0.84 8.14 -2.38 -0.02 0.82 16 23 C -0.11 -2.19 4.49 30.59 0.14 -2.06 16 24 C 0.09 1.65 3.05 31.28 0.10 1.75 16 25 H 0.08 1.33 6.04 -2.39 -0.01 1.32 16 26 C -0.15 -2.67 6.59 31.89 0.21 -2.46 16 27 C -0.15 -2.80 7.01 31.58 0.22 -2.58 16 28 C 0.04 0.86 7.69 72.35 0.56 1.41 16 29 O -0.37 -9.49 8.52 -148.98 -1.27 -10.76 16 30 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.06 2.06 8.07 -2.39 -0.02 2.04 16 32 H 0.09 2.13 6.44 -2.38 -0.02 2.11 16 33 H 0.05 2.30 7.13 -2.38 -0.02 2.28 16 34 H 0.02 0.87 6.85 -2.39 -0.02 0.86 16 35 H 0.27 16.00 8.31 -92.71 -0.77 15.23 16 36 H 0.11 3.15 7.40 -2.39 -0.02 3.14 16 37 H 0.11 2.60 6.45 -2.39 -0.02 2.59 16 38 H 0.01 0.40 8.09 -2.39 -0.02 0.39 16 39 H 0.07 2.44 5.13 -2.39 -0.01 2.42 16 40 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16 41 H 0.10 1.66 6.35 -2.39 -0.02 1.65 16 42 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.07 1.05 6.12 -2.39 -0.01 1.04 16 45 H 0.11 1.39 8.14 -2.38 -0.02 1.37 16 46 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 47 H 0.05 1.41 6.20 -2.39 -0.01 1.39 16 48 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 49 H 0.06 1.26 8.06 -2.39 -0.02 1.24 16 50 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 51 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 52 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 53 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -81.32 400.16 1.00 -80.32 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: 0.83 Total: 20.48 kcal Atomic # 6 Polarization: 0.83 SS G_CDS: 6.20 Total: 7.02 kcal Atomic # 7 Polarization: -98.29 SS G_CDS: -4.98 Total: -103.27 kcal Atomic # 8 Polarization: -48.90 SS G_CDS: -2.93 Total: -51.83 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 1.88 Total: 47.28 kcal Total: -81.32 1.00 -80.32 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933692751.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.848 kcal (2) G-P(sol) polarization free energy of solvation -81.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds