Wall clock time and date at job start Sat Apr 11 2020 06:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45193 * 109.47216 * 2 1 4 4 C 1.34234 * 117.00140 * 180.02562 * 3 2 1 5 5 O 1.20826 * 119.99548 * 359.97438 * 4 3 2 6 6 C 1.51455 * 119.99983 * 180.02562 * 4 3 2 7 7 H 1.10407 * 107.07100 * 359.18679 * 6 4 3 8 8 C 1.51935 * 109.07574 * 242.19867 * 6 4 3 9 9 H 1.10867 * 107.64575 * 77.16074 * 8 6 4 10 10 C 1.52846 * 111.43831 * 320.10100 * 8 6 4 11 11 C 1.52362 * 112.45177 * 195.23520 * 8 6 4 12 12 C 1.52859 * 110.38946 * 50.93050 * 11 8 6 13 13 H 1.08755 * 110.18057 * 61.41701 * 12 11 8 14 14 C 1.53363 * 109.07342 * 180.73469 * 12 11 8 15 15 N 1.46341 * 109.00780 * 299.89859 * 12 11 8 16 16 C 1.46910 * 111.27951 * 188.41102 * 15 12 11 17 17 C 1.50699 * 109.47013 * 164.24809 * 16 15 12 18 18 O 1.21284 * 120.00343 * 354.07073 * 17 16 15 19 19 N 1.34777 * 120.00127 * 174.07247 * 17 16 15 20 20 C 1.46499 * 120.00189 * 180.02562 * 19 17 16 21 21 C 1.50702 * 109.46959 * 179.97438 * 20 19 17 22 22 H 1.07998 * 120.00427 * 359.97438 * 21 20 19 23 23 C 1.37875 * 119.99855 * 180.02562 * 21 20 19 24 24 N 1.31518 * 120.00302 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00003 * 180.27268 * 23 21 20 26 26 H 1.48508 * 109.47332 * 179.72215 * 25 23 21 27 27 H 1.48500 * 109.47353 * 299.72592 * 25 23 21 28 28 H 1.48507 * 109.47151 * 59.72384 * 25 23 21 29 29 C 1.45750 * 113.40854 * 61.59232 * 15 12 11 30 30 H 1.11116 * 107.03333 * 189.51189 * 29 15 12 31 31 C 1.52881 * 110.85207 * 73.60450 * 29 15 12 32 32 H 1.09002 * 109.46763 * 299.99413 * 1 2 3 33 33 H 1.08995 * 109.47806 * 59.99484 * 1 2 3 34 34 H 1.09003 * 109.47129 * 179.97438 * 1 2 3 35 35 H 1.09002 * 109.46763 * 240.00587 * 2 1 3 36 36 H 1.08997 * 109.47389 * 120.01160 * 2 1 3 37 37 H 1.09003 * 109.47038 * 302.13291 * 10 8 6 38 38 H 1.08997 * 109.46998 * 62.13110 * 10 8 6 39 39 H 1.08993 * 109.46829 * 182.13225 * 10 8 6 40 40 H 1.09287 * 109.63833 * 290.53208 * 11 8 6 41 41 H 1.09287 * 109.62931 * 171.31886 * 11 8 6 42 42 H 1.08994 * 109.47062 * 186.66421 * 14 12 11 43 43 H 1.09002 * 109.47281 * 306.67023 * 14 12 11 44 44 H 1.09007 * 109.46849 * 66.66431 * 14 12 11 45 45 H 1.08997 * 109.46933 * 44.25339 * 16 15 12 46 46 H 1.08997 * 109.47530 * 284.25090 * 16 15 12 47 47 H 0.97005 * 119.99797 * 359.97438 * 19 17 16 48 48 H 1.09000 * 109.47454 * 59.99999 * 20 19 17 49 49 H 1.09000 * 109.47163 * 299.99662 * 20 19 17 50 50 H 0.97001 * 119.99994 * 180.02562 * 24 23 21 51 51 H 1.09000 * 109.46821 * 53.40692 * 31 29 15 52 52 H 1.08992 * 109.47676 * 173.40966 * 31 29 15 53 53 H 1.09003 * 109.46719 * 293.41429 * 31 29 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0807 0.5865 -0.0005 6 6 3.9236 2.9443 0.0000 7 1 3.0723 3.6472 -0.0141 8 6 4.7317 3.1480 -1.2704 9 1 4.0164 3.3229 -2.0992 10 6 5.5343 1.8974 -1.6285 11 6 5.6433 4.3662 -1.1912 12 6 6.4787 4.3240 0.0882 13 1 7.1125 3.4403 0.0934 14 6 7.3700 5.5707 0.1462 15 7 5.5807 4.3199 1.2438 16 6 6.3267 4.4804 2.4992 17 6 5.3742 4.8560 3.6049 18 8 4.2101 5.0832 3.3516 19 7 5.8160 4.9394 4.8755 20 6 4.8899 5.3040 5.9506 21 6 5.6286 5.3258 7.2640 22 1 6.6823 5.0911 7.2949 23 6 4.9589 5.6444 8.4263 24 7 3.6756 5.9297 8.3888 25 14 5.8761 5.6788 10.0532 26 1 4.9385 6.0531 11.1423 27 1 6.4447 4.3351 10.3295 28 1 6.9745 6.6758 9.9812 29 6 4.6989 3.1603 1.2878 30 1 3.9557 3.3469 2.0924 31 6 5.4719 1.9038 1.6891 32 1 -0.3633 0.5138 0.8901 33 1 -0.3634 0.5139 -0.8899 34 1 -0.3633 -1.0277 -0.0005 35 1 1.8933 -0.5138 -0.8901 36 1 1.8934 -0.5140 0.8898 37 1 6.1944 1.6399 -0.8002 38 1 4.8513 1.0698 -1.8196 39 1 6.1294 2.0909 -2.5209 40 1 5.0400 5.2774 -1.1976 41 1 6.3105 4.3824 -2.0566 42 1 8.0522 5.4906 0.9924 43 1 7.9439 5.6503 -0.7771 44 1 6.7471 6.4575 0.2643 45 1 7.0732 5.2656 2.3804 46 1 6.8225 3.5425 2.7496 47 1 6.7470 4.7573 5.0783 48 1 4.0838 4.5720 5.9997 49 1 4.4727 6.2911 5.7515 50 1 3.2046 6.1541 9.2065 51 1 6.0077 2.0887 2.6201 52 1 4.7749 1.0776 1.8289 53 1 6.1843 1.6494 0.9043 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000934163214.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:29 Heat of formation + Delta-G solvation = -120.378391 kcal Electronic energy + Delta-G solvation = -31877.603051 eV Core-core repulsion = 27749.420793 eV Total energy + Delta-G solvation = -4128.182257 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.37222 -39.71233 -38.26143 -36.76690 -34.74708 -34.07557 -33.50180 -32.29007 -31.89749 -29.66478 -28.02878 -27.83320 -27.08307 -25.62783 -23.78351 -22.61285 -22.34840 -21.54766 -20.82154 -19.53498 -18.33240 -17.74265 -17.13225 -16.90275 -16.47431 -15.85854 -15.73222 -15.54869 -15.28114 -14.86611 -14.49341 -14.22469 -14.10024 -13.66187 -13.63270 -13.42170 -13.03497 -13.01121 -12.85447 -12.61672 -12.51148 -12.28520 -12.11004 -12.07543 -11.89400 -11.84872 -11.76883 -11.59334 -11.50699 -11.38087 -11.00242 -10.95960 -10.89269 -10.83652 -10.47352 -10.37277 -10.30087 -10.11746 -9.94321 -9.39029 -8.94861 -8.70596 -8.04355 -7.80643 -6.14940 -4.21793 2.09304 2.49745 3.25908 3.30737 3.32096 3.44266 3.65854 4.24402 4.37524 4.42837 4.52189 4.57278 4.71187 4.75453 4.81874 4.91694 4.98863 5.03920 5.12605 5.20385 5.20958 5.28633 5.31586 5.43596 5.45982 5.48259 5.54260 5.55463 5.58871 5.64558 5.66960 5.75382 5.75497 5.82036 5.86735 5.90148 5.96713 6.00853 6.10841 6.16090 6.25981 6.41168 6.46858 7.05018 7.27648 7.36028 7.49272 7.55193 7.69667 7.70344 7.99595 8.67668 8.81904 9.17565 9.45101 10.95169 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.011533 B = 0.002941 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2427.144125 B = 9519.483801 C =11252.274999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.061 3.939 3 O -0.356 6.356 4 C 0.468 3.532 5 O -0.497 6.497 6 C -0.056 4.056 7 H 0.104 0.896 8 C -0.078 4.078 9 H 0.070 0.930 10 C -0.152 4.152 11 C -0.098 4.098 12 C 0.084 3.916 13 H 0.044 0.956 14 C -0.152 4.152 15 N -0.510 5.510 16 C 0.030 3.970 17 C 0.498 3.502 18 O -0.537 6.537 19 N -0.716 5.716 20 C 0.253 3.747 21 C -0.543 4.543 22 H 0.062 0.938 23 C 0.064 3.936 24 N -0.885 5.885 25 Si 0.903 3.097 26 H -0.285 1.285 27 H -0.276 1.276 28 H -0.275 1.275 29 C 0.096 3.904 30 H 0.104 0.896 31 C -0.193 4.193 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.061 0.939 39 H 0.051 0.949 40 H 0.076 0.924 41 H 0.072 0.928 42 H 0.057 0.943 43 H 0.060 0.940 44 H 0.069 0.931 45 H 0.107 0.893 46 H 0.064 0.936 47 H 0.389 0.611 48 H 0.025 0.975 49 H 0.026 0.974 50 H 0.266 0.734 51 H 0.058 0.942 52 H 0.069 0.931 53 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.802 -8.652 -22.103 23.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.013 4.013 3 O -0.273 6.273 4 C 0.310 3.690 5 O -0.384 6.384 6 C -0.076 4.076 7 H 0.122 0.878 8 C -0.097 4.097 9 H 0.088 0.912 10 C -0.209 4.209 11 C -0.136 4.136 12 C -0.024 4.024 13 H 0.062 0.938 14 C -0.210 4.210 15 N -0.234 5.234 16 C -0.101 4.101 17 C 0.282 3.718 18 O -0.415 6.415 19 N -0.366 5.366 20 C 0.132 3.868 21 C -0.582 4.582 22 H 0.080 0.920 23 C -0.140 4.140 24 N -0.523 5.523 25 Si 0.730 3.270 26 H -0.211 1.211 27 H -0.201 1.201 28 H -0.201 1.201 29 C -0.012 4.012 30 H 0.122 0.878 31 C -0.251 4.251 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.070 0.930 40 H 0.095 0.905 41 H 0.090 0.910 42 H 0.076 0.924 43 H 0.079 0.921 44 H 0.088 0.912 45 H 0.125 0.875 46 H 0.082 0.918 47 H 0.221 0.779 48 H 0.043 0.957 49 H 0.044 0.956 50 H 0.076 0.924 51 H 0.076 0.924 52 H 0.088 0.912 53 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.658 -8.342 -22.198 23.771 hybrid contribution 1.349 -0.967 1.233 2.068 sum 3.007 -9.310 -20.964 23.135 Atomic orbital electron populations 1.21811 0.92626 1.02882 1.03738 1.23011 0.95471 0.80371 1.02419 1.86562 1.24736 1.32235 1.83731 1.23851 0.80337 0.92661 0.72135 1.90627 1.60016 1.43465 1.44292 1.20749 0.99433 0.90716 0.96668 0.87769 1.20777 0.97514 0.96549 0.94849 0.91188 1.22126 1.00679 0.96794 1.01308 1.21476 0.97907 0.97580 0.96650 1.21431 0.92753 0.97744 0.90451 0.93767 1.22072 0.99140 0.98219 1.01556 1.60275 1.21951 1.40033 1.01185 1.22185 0.96186 1.02321 0.89395 1.20342 0.89056 0.78732 0.83710 1.90630 1.18151 1.49722 1.83005 1.46458 1.13963 1.68864 1.07296 1.19053 0.88740 0.96161 0.82857 1.21197 0.96071 1.49189 0.91710 0.92016 1.24947 0.94901 0.94788 0.99358 1.69967 1.08232 1.45422 1.28662 0.86491 0.79426 0.78561 0.82513 1.21079 1.20112 1.20066 1.21131 0.95927 0.88464 0.95727 0.87848 1.22743 1.02095 0.98805 1.01479 0.91177 0.91526 0.90335 0.91441 0.91196 0.91609 0.91998 0.93003 0.90486 0.90956 0.92398 0.92129 0.91244 0.87529 0.91846 0.77932 0.95716 0.95576 0.92418 0.92354 0.91246 0.91848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 10.29 37.16 0.38 -0.78 16 2 C 0.06 0.60 6.19 37.16 0.23 0.83 16 3 O -0.36 -4.45 10.19 -39.27 -0.40 -4.85 16 4 C 0.47 6.07 5.64 36.38 0.21 6.27 16 5 O -0.50 -6.90 10.75 -18.75 -0.20 -7.11 16 6 C -0.06 -0.70 2.43 -92.52 -0.23 -0.92 16 7 H 0.10 1.32 8.20 -51.12 -0.42 0.90 16 8 C -0.08 -0.79 2.40 -91.57 -0.22 -1.01 16 9 H 0.07 0.63 8.28 -50.86 -0.42 0.21 16 10 C -0.15 -1.54 7.61 37.08 0.28 -1.26 16 11 C -0.10 -0.93 4.78 -27.13 -0.13 -1.06 16 12 C 0.08 0.90 2.30 -67.90 -0.16 0.74 16 13 H 0.04 0.47 6.55 -52.07 -0.34 0.13 16 14 C -0.15 -1.42 8.47 37.35 0.32 -1.10 16 15 N -0.51 -7.01 3.93 -221.26 -0.87 -7.88 16 16 C 0.03 0.42 4.96 -4.97 -0.02 0.40 16 17 C 0.50 9.79 7.46 -10.99 -0.08 9.70 16 18 O -0.54 -12.68 14.67 5.55 0.08 -12.60 16 19 N -0.72 -14.95 5.55 -61.47 -0.34 -15.29 16 20 C 0.25 6.69 5.43 -5.19 -0.03 6.66 16 21 C -0.54 -14.74 9.28 -34.44 -0.32 -15.06 16 22 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 23 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 24 N -0.89 -26.15 13.29 55.43 0.74 -25.42 16 25 Si 0.90 20.89 29.54 -169.99 -5.02 15.86 16 26 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 27 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 28 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 29 C 0.10 1.38 2.01 -68.98 -0.14 1.24 16 30 H 0.10 1.87 6.21 -50.71 -0.31 1.55 16 31 C -0.19 -2.67 7.31 37.10 0.27 -2.40 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.61 8.13 -51.93 -0.42 0.19 16 36 H 0.07 0.71 8.13 -51.93 -0.42 0.29 16 37 H 0.07 0.74 4.73 -51.93 -0.25 0.49 16 38 H 0.06 0.70 6.07 -51.93 -0.32 0.38 16 39 H 0.05 0.44 8.07 -51.93 -0.42 0.02 16 40 H 0.08 0.77 8.17 -51.77 -0.42 0.34 16 41 H 0.07 0.55 8.06 -51.77 -0.42 0.13 16 42 H 0.06 0.52 6.45 -51.93 -0.33 0.18 16 43 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.07 0.72 8.14 -51.92 -0.42 0.30 16 45 H 0.11 1.32 5.52 -51.93 -0.29 1.03 16 46 H 0.06 0.83 5.76 -51.93 -0.30 0.53 16 47 H 0.39 6.93 8.32 -40.82 -0.34 6.59 16 48 H 0.02 0.73 8.14 -51.93 -0.42 0.30 16 49 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 50 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 51 H 0.06 0.82 5.94 -51.93 -0.31 0.51 16 52 H 0.07 1.03 5.92 -51.93 -0.31 0.73 16 53 H 0.06 0.82 4.75 -51.93 -0.25 0.58 16 LS Contribution 397.41 15.07 5.99 5.99 Total: -1.00 -32.45 397.41 -8.54 -40.99 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -8.78 Total: 6.38 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: 0.27 Total: 3.94 kcal Atomic # 7 Polarization: -48.12 SS G_CDS: -0.47 Total: -48.59 kcal Atomic # 8 Polarization: -24.04 SS G_CDS: -0.52 Total: -24.56 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.45 -8.54 -40.99 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934163214.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.392 kcal (2) G-P(sol) polarization free energy of solvation -32.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds