Wall clock time and date at job start Sat Apr 11 2020 06:11:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42901 * 114.00219 * 2 1 4 4 H 1.09000 * 109.56812 * 29.84355 * 3 2 1 5 5 C 1.53099 * 109.45212 * 269.63982 * 3 2 1 6 6 O 1.42908 * 109.48548 * 297.61159 * 5 3 2 7 7 C 1.42900 * 114.09838 * 298.89103 * 6 5 3 8 8 C 1.53094 * 109.41528 * 61.15930 * 7 6 5 9 9 C 1.53173 * 109.52186 * 150.00057 * 3 2 1 10 10 H 1.09003 * 109.54411 * 182.88325 * 9 3 2 11 11 C 1.53000 * 109.54574 * 303.05850 * 9 3 2 12 12 C 1.50697 * 109.47495 * 184.82310 * 11 9 3 13 13 O 1.21289 * 119.99763 * 359.97438 * 12 11 9 14 14 N 1.34772 * 120.00377 * 180.02562 * 12 11 9 15 15 C 1.46924 * 120.63240 * 179.97438 * 14 12 11 16 16 C 1.53194 * 108.89104 * 126.34354 * 15 14 12 17 17 C 1.53349 * 109.15205 * 54.57758 * 16 15 14 18 18 N 1.46496 * 109.41638 * 178.67413 * 17 16 15 19 19 C 1.46501 * 120.00227 * 60.13030 * 18 17 16 20 20 C 1.36942 * 119.99812 * 240.12330 * 18 17 16 21 21 H 1.07998 * 119.99827 * 22.07092 * 20 18 17 22 22 C 1.38816 * 119.99903 * 202.06382 * 20 18 17 23 23 N 1.31614 * 120.00133 * 12.43694 * 22 20 18 24 24 Si 1.86797 * 119.99699 * 192.43140 * 22 20 18 25 25 H 1.48501 * 109.47560 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.47085 * 120.00324 * 24 22 20 27 27 H 1.48502 * 109.47410 * 240.00227 * 24 22 20 28 28 C 1.53039 * 109.60879 * 298.71464 * 17 16 15 29 29 C 1.46925 * 120.62807 * 0.02562 * 14 12 11 30 30 H 1.09000 * 109.46775 * 299.99991 * 1 2 3 31 31 H 1.08997 * 109.47241 * 59.99277 * 1 2 3 32 32 H 1.08996 * 109.47420 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.40728 * 177.63589 * 5 3 2 34 34 H 1.08999 * 109.49517 * 57.64414 * 5 3 2 35 35 H 1.09001 * 109.48098 * 301.17219 * 7 6 5 36 36 H 1.09006 * 109.48034 * 181.13674 * 7 6 5 37 37 H 1.08994 * 109.52459 * 182.48725 * 8 7 6 38 38 H 1.08997 * 109.52515 * 62.29540 * 8 7 6 39 39 H 1.08998 * 109.47121 * 64.81996 * 11 9 3 40 40 H 1.09000 * 109.47129 * 304.82256 * 11 9 3 41 41 H 1.08993 * 109.58752 * 246.20224 * 15 14 12 42 42 H 1.09003 * 109.58578 * 6.48534 * 15 14 12 43 43 H 1.09008 * 109.49557 * 174.66129 * 16 15 14 44 44 H 1.09003 * 109.49667 * 294.75031 * 16 15 14 45 45 H 1.09000 * 109.41508 * 58.75304 * 17 16 15 46 46 H 1.09001 * 109.46842 * 94.29792 * 19 18 17 47 47 H 1.08993 * 109.47266 * 214.30091 * 19 18 17 48 48 H 1.09000 * 109.46857 * 334.29912 * 19 18 17 49 49 H 0.96994 * 119.99913 * 180.02562 * 23 22 20 50 50 H 1.09005 * 109.49418 * 301.42099 * 28 17 16 51 51 H 1.08992 * 109.52409 * 181.34253 * 28 17 16 52 52 H 1.08996 * 109.58749 * 353.37692 * 29 14 12 53 53 H 1.09006 * 109.58600 * 113.65925 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 2.0013 0.5111 5 6 2.2260 1.7675 -1.4436 6 8 3.1454 0.8874 -2.0935 7 6 4.4399 0.8463 -1.4895 8 6 4.3134 0.3450 -0.0485 9 6 3.3607 1.2645 0.7218 10 1 3.7807 2.2693 0.7670 11 6 3.1664 0.7267 2.1410 12 6 4.4730 0.7979 2.8885 13 8 5.4624 1.2351 2.3399 14 7 4.5424 0.3746 4.1661 15 6 5.8092 0.4372 4.9077 16 6 5.5799 1.1970 6.2180 17 6 4.4295 0.5368 6.9877 18 7 4.2261 1.2397 8.2568 19 6 3.8800 2.6632 8.2585 20 6 4.3593 0.5660 9.4416 21 1 4.9408 -0.3431 9.4835 22 6 3.7469 1.0516 10.5888 23 7 2.8470 2.0080 10.4999 24 14 4.1998 0.3477 12.2587 25 1 5.2295 -0.7087 12.0879 26 1 4.7391 1.4290 13.1220 27 1 2.9914 -0.2366 12.8940 28 6 3.1475 0.6067 6.1549 29 6 3.3529 -0.1591 4.8435 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 2.6303 2.7798 -1.4433 34 1 1.2745 1.7562 -1.9751 35 1 4.8731 1.8465 -1.4898 36 1 5.0831 0.1711 -2.0540 37 1 5.2937 0.3548 0.4279 38 1 3.9180 -0.6707 -0.0495 39 1 2.8305 -0.3091 2.0942 40 1 2.4188 1.3281 2.6582 41 1 6.1546 -0.5731 5.1268 42 1 6.5574 0.9575 4.3097 43 1 6.4886 1.1676 6.8194 44 1 5.3224 2.2329 5.9976 45 1 4.6775 -0.5060 7.1858 46 1 2.7969 2.7737 8.3104 47 1 4.3364 3.1470 9.1220 48 1 4.2494 3.1280 7.3444 49 1 2.4194 2.3476 11.3016 50 1 2.9128 1.6483 5.9352 51 1 2.3256 0.1585 6.7130 52 1 2.4796 -0.0300 4.2042 53 1 3.4974 -1.2186 5.0552 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985463091.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:39 Heat of formation + Delta-G solvation = -124.766837 kcal Electronic energy + Delta-G solvation = -31496.751625 eV Core-core repulsion = 27368.379071 eV Total energy + Delta-G solvation = -4128.372555 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.54245 -40.52350 -38.92806 -37.89052 -36.70400 -35.18192 -33.93940 -32.24413 -31.54748 -31.39333 -29.69622 -28.03742 -27.39137 -26.42664 -24.87631 -24.33797 -23.99011 -23.35178 -21.26936 -20.81022 -19.64744 -18.75625 -18.26709 -17.54173 -17.35433 -17.00109 -16.95684 -16.67939 -16.43304 -16.02489 -15.81474 -15.70292 -15.14718 -15.04166 -14.88596 -14.78988 -14.61070 -14.25289 -14.01364 -13.69591 -13.63307 -13.43977 -13.13664 -13.06656 -13.00836 -12.79284 -12.65788 -12.56487 -12.35969 -12.19836 -12.15388 -12.03243 -11.97961 -11.81728 -11.73027 -11.55460 -11.27055 -11.22216 -10.97334 -10.67316 -10.60686 -10.02118 -9.61063 -8.76370 -7.80908 -5.27891 1.46045 1.48246 1.57703 1.66452 2.05119 2.51394 2.76130 3.10228 3.32528 3.44984 3.63213 3.70536 3.79189 3.89317 3.91083 4.05570 4.15834 4.20698 4.32674 4.34266 4.37824 4.40369 4.47056 4.52462 4.56899 4.57704 4.58842 4.66679 4.69988 4.78502 4.80162 4.84747 4.86674 4.91337 4.93383 4.97777 5.02281 5.07262 5.11404 5.20299 5.25896 5.36844 5.41333 5.50351 5.61453 5.68311 5.72959 6.15852 6.34621 6.42460 6.47904 7.17109 7.20961 7.90202 8.34266 9.22424 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.023020 B = 0.002310 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.026788 B =12120.515717 C =12740.122473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.389 6.389 3 C 0.060 3.940 4 H 0.090 0.910 5 C 0.036 3.964 6 O -0.394 6.394 7 C 0.062 3.938 8 C -0.143 4.143 9 C -0.068 4.068 10 H 0.083 0.917 11 C -0.123 4.123 12 C 0.512 3.488 13 O -0.577 6.577 14 N -0.609 5.609 15 C 0.122 3.878 16 C -0.132 4.132 17 C 0.173 3.827 18 N -0.612 5.612 19 C 0.184 3.816 20 C -0.257 4.257 21 H 0.072 0.928 22 C -0.055 4.055 23 N -0.939 5.939 24 Si 0.966 3.034 25 H -0.266 1.266 26 H -0.295 1.295 27 H -0.292 1.292 28 C -0.135 4.135 29 C 0.118 3.882 30 H 0.052 0.948 31 H 0.048 0.952 32 H 0.091 0.909 33 H 0.070 0.930 34 H 0.105 0.895 35 H 0.053 0.947 36 H 0.099 0.901 37 H 0.075 0.925 38 H 0.063 0.937 39 H 0.110 0.890 40 H 0.107 0.893 41 H 0.078 0.922 42 H 0.081 0.919 43 H 0.065 0.935 44 H 0.047 0.953 45 H 0.061 0.939 46 H 0.003 0.997 47 H 0.011 0.989 48 H 0.022 0.978 49 H 0.246 0.754 50 H 0.048 0.952 51 H 0.062 0.938 52 H 0.108 0.892 53 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.515 -2.954 -23.780 24.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.308 6.308 3 C 0.002 3.998 4 H 0.108 0.892 5 C -0.041 4.041 6 O -0.313 6.313 7 C -0.015 4.015 8 C -0.181 4.181 9 C -0.087 4.087 10 H 0.101 0.899 11 C -0.163 4.163 12 C 0.303 3.697 13 O -0.458 6.458 14 N -0.341 5.341 15 C -0.001 4.001 16 C -0.172 4.172 17 C 0.067 3.933 18 N -0.334 5.334 19 C 0.039 3.961 20 C -0.387 4.387 21 H 0.089 0.911 22 C -0.250 4.250 23 N -0.586 5.586 24 Si 0.795 3.205 25 H -0.191 1.191 26 H -0.222 1.222 27 H -0.220 1.220 28 C -0.175 4.175 29 C -0.005 4.005 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.109 0.891 33 H 0.088 0.912 34 H 0.124 0.876 35 H 0.072 0.928 36 H 0.117 0.883 37 H 0.093 0.907 38 H 0.082 0.918 39 H 0.128 0.872 40 H 0.126 0.874 41 H 0.096 0.904 42 H 0.099 0.901 43 H 0.083 0.917 44 H 0.066 0.934 45 H 0.079 0.921 46 H 0.021 0.979 47 H 0.030 0.970 48 H 0.040 0.960 49 H 0.056 0.944 50 H 0.067 0.933 51 H 0.080 0.920 52 H 0.126 0.874 53 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.012 -2.940 -24.081 24.446 hybrid contribution -0.037 0.415 1.818 1.865 sum -3.049 -2.525 -22.263 22.612 Atomic orbital electron populations 1.22963 0.80042 1.03589 1.00708 1.87955 1.20696 1.27151 1.95047 1.22861 0.94663 0.86089 0.96159 0.89185 1.23215 0.94439 0.93285 0.93123 1.87906 1.22870 1.66183 1.54350 1.22629 0.84484 1.01063 0.93299 1.22157 1.00546 0.99475 0.95928 1.21038 0.94425 1.00297 0.92917 0.89869 1.21658 0.94320 1.05287 0.95010 1.21149 0.91365 0.75965 0.81245 1.90617 1.39349 1.47883 1.67943 1.48265 1.11353 1.62401 1.12119 1.21478 0.86073 1.00937 0.91621 1.22321 0.99746 0.99389 0.95763 1.20567 0.92951 0.95157 0.84661 1.44196 1.81814 1.05952 1.01487 1.20395 0.96649 0.83756 0.95303 1.19601 1.24341 1.07699 0.87097 0.91057 1.25735 0.97426 1.00052 1.01772 1.70233 1.28762 1.32046 1.27603 0.85217 0.77375 0.77609 0.80328 1.19069 1.22223 1.21959 1.22298 0.99196 1.00140 0.95839 1.21867 0.87536 0.98004 0.93111 0.92963 0.93385 0.89077 0.91224 0.87648 0.92831 0.88330 0.90679 0.91809 0.87193 0.87443 0.90385 0.90088 0.91652 0.93418 0.92065 0.97893 0.96981 0.96009 0.94450 0.93287 0.91975 0.87413 0.89857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 10.82 113.37 1.23 1.49 16 2 O -0.39 -6.72 9.08 -141.91 -1.29 -8.00 16 3 C 0.06 0.92 2.44 30.69 0.07 0.99 16 4 H 0.09 1.01 7.79 -2.39 -0.02 1.00 16 5 C 0.04 0.55 6.48 72.02 0.47 1.02 16 6 O -0.39 -8.20 10.70 -141.91 -1.52 -9.71 16 7 C 0.06 1.17 6.84 72.01 0.49 1.66 16 8 C -0.14 -2.99 4.97 30.69 0.15 -2.84 16 9 C -0.07 -1.26 1.75 -10.68 -0.02 -1.28 16 10 H 0.08 1.67 7.96 -2.39 -0.02 1.65 16 11 C -0.12 -2.29 3.28 29.85 0.10 -2.19 16 12 C 0.51 13.03 7.44 87.66 0.65 13.69 16 13 O -0.58 -18.07 13.40 -3.06 -0.04 -18.11 16 14 N -0.61 -15.48 2.97 -818.82 -2.43 -17.91 16 15 C 0.12 3.36 6.42 86.36 0.55 3.92 16 16 C -0.13 -4.36 5.35 30.78 0.16 -4.19 16 17 C 0.17 6.49 2.55 45.12 0.12 6.60 16 18 N -0.61 -29.65 2.81 -702.06 -1.97 -31.62 16 19 C 0.18 9.08 8.03 127.77 1.03 10.10 16 20 C -0.26 -13.77 9.60 84.03 0.81 -12.96 16 21 H 0.07 3.70 7.81 -2.91 -0.02 3.67 16 22 C -0.06 -3.05 5.11 84.86 0.43 -2.61 16 23 N -0.94 -55.01 10.63 21.65 0.23 -54.78 16 24 Si 0.97 44.62 29.57 68.60 2.03 46.65 16 25 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 26 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 27 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 28 C -0.13 -4.27 5.34 30.69 0.16 -4.10 16 29 C 0.12 2.66 6.34 86.38 0.55 3.21 16 30 H 0.05 0.48 8.09 -2.39 -0.02 0.46 16 31 H 0.05 0.45 7.86 -2.39 -0.02 0.43 16 32 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.11 1.29 7.86 -2.39 -0.02 1.27 16 35 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.10 1.67 8.14 -2.38 -0.02 1.65 16 37 H 0.07 1.85 6.05 -2.39 -0.01 1.83 16 38 H 0.06 1.43 7.84 -2.39 -0.02 1.41 16 39 H 0.11 1.89 7.57 -2.39 -0.02 1.88 16 40 H 0.11 1.67 7.69 -2.39 -0.02 1.65 16 41 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.08 2.35 7.00 -2.39 -0.02 2.33 16 43 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 44 H 0.05 1.69 6.73 -2.39 -0.02 1.67 16 45 H 0.06 2.30 7.86 -2.39 -0.02 2.28 16 46 H 0.00 0.15 7.41 -2.39 -0.02 0.13 16 47 H 0.01 0.63 7.20 -2.39 -0.02 0.61 16 48 H 0.02 0.94 6.47 -2.39 -0.02 0.92 16 49 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 50 H 0.05 1.65 7.72 -2.38 -0.02 1.63 16 51 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 52 H 0.11 1.85 5.93 -2.39 -0.01 1.83 16 53 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 Total: -1.00 -68.32 399.53 2.83 -65.49 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: 0.87 Total: 15.50 kcal Atomic # 6 Polarization: 5.55 SS G_CDS: 6.96 Total: 12.50 kcal Atomic # 7 Polarization: -100.13 SS G_CDS: -4.18 Total: -104.31 kcal Atomic # 8 Polarization: -32.98 SS G_CDS: -2.85 Total: -35.82 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -68.32 2.83 -65.49 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985463091.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.281 kcal (2) G-P(sol) polarization free energy of solvation -68.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds