Wall clock time and date at job start Sat Apr 11 2020 06:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42899 * 114.00162 * 2 1 4 4 H 1.09003 * 109.52204 * 329.88221 * 3 2 1 5 5 C 1.53097 * 109.51968 * 90.00433 * 3 2 1 6 6 O 1.42898 * 109.41405 * 62.36262 * 5 3 2 7 7 C 1.42899 * 114.10053 * 61.16391 * 6 5 3 8 8 C 1.53098 * 109.40993 * 298.83671 * 7 6 5 9 9 C 1.53177 * 109.21356 * 57.57693 * 8 7 6 10 10 H 1.09005 * 109.54330 * 62.92184 * 9 8 7 11 11 C 1.52997 * 109.54370 * 183.18188 * 9 8 7 12 12 C 1.50703 * 109.47343 * 295.00494 * 11 9 8 13 13 O 1.21281 * 119.99861 * 359.97438 * 12 11 9 14 14 N 1.34775 * 120.00058 * 180.02562 * 12 11 9 15 15 C 1.46505 * 120.00026 * 179.97438 * 14 12 11 16 16 H 1.09000 * 109.46755 * 35.00346 * 15 14 12 17 17 C 1.53000 * 109.46878 * 154.99621 * 15 14 12 18 18 C 1.52998 * 109.46854 * 180.02562 * 17 15 14 19 19 C 1.53002 * 109.47125 * 300.00227 * 18 17 15 20 20 H 1.09000 * 109.46983 * 299.99822 * 19 18 17 21 21 N 1.46504 * 109.46852 * 180.02562 * 19 18 17 22 22 C 1.36942 * 119.99594 * 154.99833 * 21 19 18 23 23 H 1.08000 * 120.00320 * 0.02562 * 22 21 19 24 24 C 1.38807 * 119.99916 * 179.97438 * 22 21 19 25 25 N 1.31621 * 119.99834 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 120.00192 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.46928 * 359.97438 * 26 24 22 28 28 H 1.48500 * 109.47274 * 119.99868 * 26 24 22 29 29 H 1.48501 * 109.47004 * 240.00104 * 26 24 22 30 30 C 1.52992 * 109.47213 * 60.00136 * 19 18 17 31 31 C 1.52990 * 109.47522 * 275.00183 * 15 14 12 32 32 H 1.09004 * 109.46825 * 299.99248 * 1 2 3 33 33 H 1.08997 * 109.47521 * 59.99369 * 1 2 3 34 34 H 1.09002 * 109.46946 * 179.97438 * 1 2 3 35 35 H 1.09007 * 109.47760 * 302.37588 * 5 3 2 36 36 H 1.09003 * 109.48798 * 182.35253 * 5 3 2 37 37 H 1.08999 * 109.48409 * 178.86351 * 7 6 5 38 38 H 1.08998 * 109.49466 * 58.82352 * 7 6 5 39 39 H 1.09002 * 109.52244 * 177.51632 * 8 7 6 40 40 H 1.09004 * 109.52508 * 297.64161 * 8 7 6 41 41 H 1.09003 * 109.47224 * 55.00503 * 11 9 8 42 42 H 1.09007 * 109.47399 * 175.00270 * 11 9 8 43 43 H 0.97001 * 120.00052 * 0.02562 * 14 12 11 44 44 H 1.08994 * 109.47357 * 300.00184 * 17 15 14 45 45 H 1.09000 * 109.46836 * 60.00774 * 17 15 14 46 46 H 1.09004 * 109.47528 * 60.00015 * 18 17 15 47 47 H 1.09001 * 109.47458 * 180.02562 * 18 17 15 48 48 H 0.96994 * 120.00580 * 334.99803 * 21 19 18 49 49 H 0.97005 * 119.99871 * 179.97438 * 25 24 22 50 50 H 1.09000 * 109.47402 * 59.99943 * 30 19 18 51 51 H 1.09003 * 109.47419 * 180.02562 * 30 19 18 52 52 H 1.09004 * 109.47000 * 300.00313 * 31 15 14 53 53 H 1.09004 * 109.47508 * 59.99193 * 31 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3465 1.9997 -0.5155 5 6 2.2184 1.7727 1.4430 6 8 3.1340 0.8937 2.0995 7 6 4.4316 0.8508 1.5024 8 6 4.3123 0.3465 0.0618 9 6 3.3635 1.2633 -0.7164 10 1 3.7829 2.2684 -0.7612 11 6 3.1766 0.7210 -2.1348 12 6 4.4881 0.7859 -2.8743 13 8 5.4750 1.2232 -2.3214 14 7 4.5640 0.3588 -4.1503 15 6 5.8389 0.4224 -4.8694 16 1 6.6570 0.2252 -4.1766 17 6 5.8493 -0.6272 -5.9827 18 6 7.1809 -0.5612 -6.7332 19 6 7.3541 0.8312 -7.3433 20 1 6.5363 1.0285 -8.0363 21 7 8.6289 0.8940 -8.0625 22 6 8.7946 1.7897 -9.0850 23 1 7.9858 2.4500 -9.3610 24 6 10.0026 1.8497 -9.7661 25 7 10.9889 1.0461 -9.4288 26 14 10.2291 3.0720 -11.1605 27 1 8.9798 3.8545 -11.3405 28 1 11.3479 3.9926 -10.8350 29 1 10.5392 2.3400 -12.4148 30 6 7.3437 1.8806 -6.2300 31 6 6.0116 1.8147 -5.4794 32 1 -0.3633 0.5137 0.8901 33 1 -0.3634 0.5139 -0.8899 34 1 -0.3633 -1.0277 -0.0005 35 1 1.2639 1.7628 1.9695 36 1 2.6229 2.7849 1.4427 37 1 5.0716 0.1767 2.0716 38 1 4.8653 1.8508 1.5027 39 1 5.2951 0.3548 -0.4096 40 1 3.9176 -0.6696 0.0630 41 1 2.8375 -0.3138 -2.0864 42 1 2.4338 1.3226 -2.6589 43 1 3.7744 0.0101 -4.5929 44 1 5.7263 -1.6191 -5.5480 45 1 5.0312 -0.4300 -6.6755 46 1 7.9988 -0.7586 -6.0402 47 1 7.1882 -1.3086 -7.5267 48 1 9.3555 0.3013 -7.8144 49 1 11.8330 1.0877 -9.9050 50 1 8.1615 1.6833 -5.5370 51 1 7.4666 2.8726 -6.6646 52 1 5.1934 2.0119 -6.1722 53 1 6.0041 2.5624 -4.6863 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034662575.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:55 Heat of formation + Delta-G solvation = -162.309758 kcal Electronic energy + Delta-G solvation = -30489.146262 eV Core-core repulsion = 26359.145724 eV Total energy + Delta-G solvation = -4130.000538 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.42255 -40.50137 -39.21561 -37.90079 -36.40352 -35.08957 -34.61322 -32.50376 -31.68310 -31.45833 -30.18672 -28.52545 -27.39268 -25.69082 -24.53844 -24.34365 -23.60687 -22.39116 -21.39369 -20.97433 -20.67323 -19.12228 -18.07849 -17.56393 -17.47913 -17.19668 -16.84656 -16.63857 -16.41661 -16.16570 -15.82266 -15.68030 -15.38253 -15.08230 -14.94392 -14.83838 -14.64548 -14.10269 -13.98988 -13.81666 -13.52342 -13.33677 -13.10745 -13.09827 -13.07674 -12.86674 -12.58287 -12.39317 -12.28321 -12.19962 -12.10103 -12.02981 -11.97652 -11.71381 -11.63465 -11.45448 -11.28145 -11.19322 -10.98437 -10.86287 -10.66587 -10.04503 -9.92244 -8.99608 -7.93864 -5.22002 1.46268 1.47182 1.56987 1.73835 2.23665 2.56280 2.75746 3.09233 3.39098 3.61582 3.71441 3.77383 3.80792 3.87210 3.91250 3.93206 4.17309 4.30483 4.32006 4.37732 4.38909 4.41488 4.47829 4.53131 4.55469 4.56481 4.57984 4.60365 4.66502 4.67677 4.78491 4.82757 4.88242 4.94176 4.98015 5.01264 5.06537 5.12784 5.15092 5.21216 5.25583 5.28618 5.36397 5.49458 5.55203 5.61269 5.65345 6.15111 6.29111 6.42291 6.67697 7.34273 7.38600 8.12178 8.34315 9.30057 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.027023 B = 0.001836 C = 0.001807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.918870 B =15248.638971 C =15490.318632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.390 6.390 3 C 0.062 3.938 4 H 0.095 0.905 5 C 0.033 3.967 6 O -0.395 6.395 7 C 0.061 3.939 8 C -0.145 4.145 9 C -0.069 4.069 10 H 0.082 0.918 11 C -0.121 4.121 12 C 0.508 3.492 13 O -0.579 6.579 14 N -0.714 5.714 15 C 0.153 3.847 16 H 0.061 0.939 17 C -0.105 4.105 18 C -0.114 4.114 19 C 0.172 3.828 20 H 0.048 0.952 21 N -0.740 5.740 22 C -0.234 4.234 23 H 0.076 0.924 24 C -0.081 4.081 25 N -0.971 5.971 26 Si 0.971 3.029 27 H -0.265 1.265 28 H -0.297 1.297 29 H -0.293 1.293 30 C -0.123 4.123 31 C -0.110 4.110 32 H 0.045 0.955 33 H 0.056 0.944 34 H 0.090 0.910 35 H 0.106 0.894 36 H 0.068 0.932 37 H 0.095 0.905 38 H 0.051 0.949 39 H 0.072 0.928 40 H 0.064 0.936 41 H 0.111 0.889 42 H 0.118 0.882 43 H 0.416 0.584 44 H 0.086 0.914 45 H 0.087 0.913 46 H 0.050 0.950 47 H 0.066 0.934 48 H 0.371 0.629 49 H 0.250 0.750 50 H 0.037 0.963 51 H 0.039 0.961 52 H 0.075 0.925 53 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.125 -2.089 20.497 34.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.309 6.309 3 C 0.004 3.996 4 H 0.113 0.887 5 C -0.044 4.044 6 O -0.314 6.314 7 C -0.016 4.016 8 C -0.183 4.183 9 C -0.088 4.088 10 H 0.100 0.900 11 C -0.161 4.161 12 C 0.296 3.704 13 O -0.459 6.459 14 N -0.365 5.365 15 C 0.048 3.952 16 H 0.079 0.921 17 C -0.143 4.143 18 C -0.153 4.153 19 C 0.064 3.936 20 H 0.066 0.934 21 N -0.379 5.379 22 C -0.366 4.366 23 H 0.094 0.906 24 C -0.273 4.273 25 N -0.623 5.623 26 Si 0.801 3.199 27 H -0.189 1.189 28 H -0.224 1.224 29 H -0.220 1.220 30 C -0.164 4.164 31 C -0.149 4.149 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.108 0.892 35 H 0.124 0.876 36 H 0.087 0.913 37 H 0.113 0.887 38 H 0.070 0.930 39 H 0.090 0.910 40 H 0.083 0.917 41 H 0.129 0.871 42 H 0.136 0.864 43 H 0.253 0.747 44 H 0.104 0.896 45 H 0.106 0.894 46 H 0.069 0.931 47 H 0.084 0.916 48 H 0.202 0.798 49 H 0.058 0.942 50 H 0.055 0.945 51 H 0.058 0.942 52 H 0.094 0.906 53 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -26.441 -1.932 20.911 33.765 hybrid contribution 0.871 0.740 -1.139 1.614 sum -25.570 -1.192 19.772 32.344 Atomic orbital electron populations 1.22968 0.79987 1.03569 1.00787 1.87960 1.20766 1.27176 1.95029 1.22841 0.94679 0.86105 0.95936 0.88724 1.23257 0.94449 0.93273 0.93402 1.87906 1.22723 1.66295 1.54470 1.22613 0.84434 1.00917 0.93614 1.22168 1.00669 0.99645 0.95811 1.21030 0.94206 1.00170 0.93389 0.89965 1.21623 0.94088 1.05577 0.94774 1.21262 0.91358 0.76091 0.81708 1.90678 1.39848 1.47223 1.68176 1.45996 1.12762 1.64749 1.13003 1.20777 0.86308 0.94965 0.93157 0.92086 1.21641 0.97564 0.98765 0.96378 1.21644 0.97706 0.96611 0.99304 1.20494 0.87743 0.93753 0.91584 0.93402 1.42696 1.12817 1.43813 1.38584 1.19665 0.97502 1.11723 1.07702 0.90633 1.25568 0.96442 1.02127 1.03154 1.69832 1.04474 1.42796 1.45171 0.85098 0.77611 0.78341 0.78898 1.18924 1.22399 1.22010 1.22030 0.96578 0.99893 0.97868 1.21750 0.97345 0.96981 0.98840 0.93614 0.92543 0.89163 0.87641 0.91343 0.88660 0.93032 0.90983 0.91749 0.87097 0.86373 0.74705 0.89564 0.89402 0.93070 0.91560 0.79774 0.94164 0.94454 0.94172 0.90601 0.93339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 10.82 113.37 1.23 1.41 16 2 O -0.39 -5.50 9.07 -141.87 -1.29 -6.79 16 3 C 0.06 0.76 2.43 30.69 0.07 0.83 16 4 H 0.09 0.67 7.79 -2.39 -0.02 0.65 16 5 C 0.03 0.44 6.49 72.01 0.47 0.91 16 6 O -0.39 -7.87 10.70 -141.87 -1.52 -9.39 16 7 C 0.06 1.14 6.84 72.01 0.49 1.63 16 8 C -0.15 -2.86 4.96 30.69 0.15 -2.71 16 9 C -0.07 -1.08 1.76 -10.68 -0.02 -1.10 16 10 H 0.08 1.44 7.97 -2.38 -0.02 1.42 16 11 C -0.12 -1.59 4.94 29.85 0.15 -1.44 16 12 C 0.51 10.45 7.53 87.66 0.66 11.11 16 13 O -0.58 -17.21 13.64 -3.03 -0.04 -17.25 16 14 N -0.71 -12.59 5.08 -442.54 -2.25 -14.83 16 15 C 0.15 3.69 2.45 44.99 0.11 3.80 16 16 H 0.06 1.84 7.58 -2.39 -0.02 1.82 16 17 C -0.11 -2.27 5.39 30.59 0.16 -2.11 16 18 C -0.11 -3.53 5.39 30.59 0.16 -3.36 16 19 C 0.17 6.67 2.77 44.99 0.12 6.80 16 20 H 0.05 1.84 8.08 -2.39 -0.02 1.82 16 21 N -0.74 -37.71 5.12 -322.94 -1.65 -39.37 16 22 C -0.23 -13.09 9.93 84.03 0.83 -12.26 16 23 H 0.08 4.06 7.83 -2.91 -0.02 4.03 16 24 C -0.08 -4.72 5.50 84.86 0.47 -4.26 16 25 N -0.97 -60.48 13.06 21.65 0.28 -60.19 16 26 Si 0.97 46.71 29.55 68.60 2.03 48.74 16 27 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 28 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 29 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 30 C -0.12 -4.52 5.50 30.61 0.17 -4.35 16 31 C -0.11 -3.08 5.50 30.61 0.17 -2.91 16 32 H 0.05 0.30 7.83 -2.38 -0.02 0.28 16 33 H 0.06 0.26 8.09 -2.39 -0.02 0.24 16 34 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.11 1.10 7.83 -2.38 -0.02 1.08 16 36 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.07 1.75 6.04 -2.39 -0.01 1.74 16 40 H 0.06 1.35 7.84 -2.38 -0.02 1.34 16 41 H 0.11 1.30 7.77 -2.39 -0.02 1.29 16 42 H 0.12 0.91 8.14 -2.38 -0.02 0.89 16 43 H 0.42 4.35 8.60 -92.71 -0.80 3.55 16 44 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 46 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 47 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 48 H 0.37 20.45 7.80 -92.71 -0.72 19.73 16 49 H 0.25 15.05 8.31 -92.70 -0.77 14.28 16 50 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 51 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 52 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 53 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16 Total: -1.00 -74.36 410.94 0.34 -74.02 By element: Atomic # 1 Polarization: 33.70 SS G_CDS: -0.63 Total: 33.07 kcal Atomic # 6 Polarization: -13.41 SS G_CDS: 5.40 Total: -8.00 kcal Atomic # 7 Polarization: -110.78 SS G_CDS: -3.62 Total: -114.39 kcal Atomic # 8 Polarization: -30.59 SS G_CDS: -2.85 Total: -33.44 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 2.03 Total: 48.74 kcal Total: -74.36 0.34 -74.02 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034662575.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.288 kcal (2) G-P(sol) polarization free energy of solvation -74.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds