Wall clock time and date at job start Sat Apr 11 2020 06:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 113.99756 * 2 1 4 4 C 1.53004 * 109.46961 * 210.00048 * 3 2 1 5 5 C 1.53005 * 109.47077 * 180.02562 * 4 3 2 6 6 C 1.52998 * 109.47174 * 59.99645 * 5 4 3 7 7 C 1.50700 * 109.47213 * 60.00315 * 6 5 4 8 8 O 1.21288 * 119.99682 * 359.97438 * 7 6 5 9 9 N 1.34772 * 120.00307 * 180.02562 * 7 6 5 10 10 C 1.46499 * 119.99941 * 180.02562 * 9 7 6 11 11 C 1.53005 * 109.47072 * 179.97438 * 10 9 7 12 12 H 1.08997 * 108.45138 * 57.88129 * 11 10 9 13 13 C 1.46916 * 108.61910 * 175.75756 * 11 10 9 14 14 N 1.50117 * 106.77776 * 177.91651 * 13 11 10 15 15 C 1.36929 * 120.63779 * 111.32326 * 14 13 11 16 16 H 1.08006 * 119.99641 * 320.50267 * 15 14 13 17 17 C 1.38808 * 120.00183 * 140.50739 * 15 14 13 18 18 N 1.31629 * 120.00081 * 156.58715 * 17 15 14 19 19 Si 1.86800 * 120.00245 * 336.58428 * 17 15 14 20 20 H 1.48495 * 109.47107 * 95.55356 * 19 17 15 21 21 H 1.48496 * 109.47340 * 215.56061 * 19 17 15 22 22 H 1.48506 * 109.46696 * 335.55366 * 19 17 15 23 23 C 1.43425 * 118.72633 * 291.34078 * 14 13 11 24 24 C 1.55330 * 116.24057 * 89.35659 * 23 14 13 25 25 C 1.55187 * 108.87052 * 319.47046 * 24 23 14 26 26 O 1.39642 * 110.56924 * 322.14010 * 25 24 23 27 27 C 1.53004 * 109.47409 * 300.00152 * 6 5 4 28 28 C 1.52998 * 109.47203 * 89.99745 * 3 2 1 29 29 H 1.08998 * 109.46847 * 60.00391 * 1 2 3 30 30 H 1.09003 * 109.46444 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46853 * 300.00033 * 1 2 3 32 32 H 1.09000 * 109.47564 * 329.99766 * 3 2 1 33 33 H 1.09002 * 109.47066 * 59.99933 * 4 3 2 34 34 H 1.08996 * 109.47137 * 299.99916 * 4 3 2 35 35 H 1.09004 * 109.46766 * 299.99790 * 5 4 3 36 36 H 1.08999 * 109.46983 * 179.97438 * 5 4 3 37 37 H 1.08997 * 109.47282 * 179.97438 * 6 5 4 38 38 H 0.96996 * 119.99972 * 359.97438 * 9 7 6 39 39 H 1.08999 * 109.47310 * 59.99487 * 10 9 7 40 40 H 1.08995 * 109.47220 * 299.99463 * 10 9 7 41 41 H 1.08997 * 109.99515 * 297.23342 * 13 11 10 42 42 H 1.09003 * 109.98699 * 58.50840 * 13 11 10 43 43 H 0.96998 * 119.99775 * 179.97438 * 18 17 15 44 44 H 1.08999 * 108.12982 * 211.12073 * 23 14 13 45 45 H 1.09000 * 108.12957 * 327.60027 * 23 14 13 46 46 H 1.09009 * 109.56614 * 79.28349 * 24 23 14 47 47 H 1.09001 * 109.57132 * 199.64743 * 24 23 14 48 48 H 1.09006 * 109.25635 * 201.85707 * 25 24 23 49 49 H 1.08999 * 109.26049 * 82.42263 * 25 24 23 50 50 H 1.09002 * 109.47066 * 179.97438 * 27 6 5 51 51 H 1.08996 * 109.47137 * 299.99908 * 27 6 5 52 52 H 1.08992 * 109.47211 * 300.00182 * 28 3 2 53 53 H 1.09004 * 109.47155 * 60.00260 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.3589 1.2633 -0.7213 5 6 3.9815 2.6609 -0.7207 6 6 4.1889 3.1263 0.7219 7 6 5.1085 2.1665 1.4320 8 8 5.5538 1.2047 0.8423 9 7 5.4354 2.3764 2.7226 10 6 6.3298 1.4437 3.4126 11 6 6.5372 1.9089 4.8554 12 1 5.5637 1.9687 5.3419 13 6 7.3522 0.9087 5.5582 14 7 7.5729 1.4293 6.9488 15 6 6.9917 0.8136 8.0249 16 1 5.9812 0.4394 7.9521 17 6 7.7012 0.6703 9.2094 18 7 7.0579 0.5211 10.3480 19 14 9.5690 0.6893 9.1875 20 1 10.0537 2.0598 9.4905 21 1 10.0856 -0.2558 10.2097 22 1 10.0524 0.2788 7.8447 23 6 8.4041 2.5843 7.1287 24 6 7.6884 3.9616 7.0682 25 6 6.6341 3.9298 5.9299 26 8 7.1160 3.2096 4.8349 27 6 2.8402 3.1685 1.4432 28 6 2.2176 1.7714 1.4425 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.3450 1.9994 -0.5139 33 1 3.2111 0.9313 -1.7490 34 1 4.0242 0.5694 -0.2075 35 1 3.3163 3.3551 -1.2344 36 1 4.9425 2.6308 -1.2342 37 1 4.6329 4.1218 0.7223 38 1 5.0790 3.1454 3.1942 39 1 7.2908 1.4144 2.8990 40 1 5.8870 0.4477 3.4119 41 1 6.8227 -0.0432 5.5965 42 1 8.3081 0.7830 5.0498 43 1 7.5537 0.4206 11.1756 44 1 8.8966 2.5002 8.0974 45 1 9.1764 2.5695 6.3596 46 1 7.1931 4.1576 8.0193 47 1 8.4196 4.7445 6.8671 48 1 6.4103 4.9503 5.6187 49 1 5.7225 3.4586 6.2972 50 1 2.9881 3.4996 2.4711 51 1 2.1751 3.8627 0.9296 52 1 1.2568 1.8014 1.9563 53 1 2.8829 1.0776 1.9564 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073752590.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:14 Heat of formation + Delta-G solvation = -107.065966 kcal Electronic energy + Delta-G solvation = -31627.054524 eV Core-core repulsion = 27499.449536 eV Total energy + Delta-G solvation = -4127.604987 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 2.00 seconds Orbital eigenvalues (eV) -40.73378 -39.47582 -38.43026 -36.20724 -35.33688 -34.82705 -32.41829 -31.77634 -30.94779 -30.53003 -28.87835 -26.84062 -25.97972 -25.43381 -23.40166 -22.93252 -22.26013 -21.23198 -21.13572 -20.14489 -19.44055 -17.12239 -16.94417 -16.86760 -16.36678 -15.94466 -15.89152 -15.56833 -15.35179 -15.22018 -14.62944 -14.40437 -14.19387 -14.10476 -13.87010 -13.48806 -13.29972 -13.16668 -12.76909 -12.68103 -12.46674 -12.42236 -12.36654 -12.13734 -11.92809 -11.85154 -11.65710 -11.34159 -11.24845 -10.93598 -10.79948 -10.78325 -10.63406 -10.53344 -10.41919 -10.21794 -9.76802 -9.67881 -9.66169 -9.53801 -9.04536 -8.94270 -8.53483 -6.86520 -6.08628 -3.53120 2.67299 3.19983 3.29474 3.44011 3.51319 3.54283 4.22220 4.34207 4.42486 4.47336 4.60649 4.74580 4.76668 4.83421 4.98415 5.07705 5.08650 5.12366 5.16073 5.19640 5.23704 5.34166 5.35951 5.40508 5.45253 5.55058 5.58272 5.68400 5.70390 5.73866 5.78382 5.83454 5.91869 5.95146 5.97801 6.02144 6.06588 6.13320 6.23303 6.33168 6.46195 6.52490 6.58027 6.59289 6.76441 6.83218 7.03875 7.54939 7.60924 8.00086 8.26036 8.28442 8.91729 9.62564 10.07251 11.06312 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.018243 B = 0.002560 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.502447 B =10934.057591 C =11497.049989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.092 3.908 4 C -0.131 4.131 5 C -0.092 4.092 6 C -0.112 4.112 7 C 0.517 3.483 8 O -0.538 6.538 9 N -0.719 5.719 10 C 0.116 3.884 11 C 0.063 3.937 12 H 0.068 0.932 13 C 0.113 3.887 14 N -0.599 5.599 15 C -0.275 4.275 16 H 0.076 0.924 17 C 0.043 3.957 18 N -0.895 5.895 19 Si 0.879 3.121 20 H -0.286 1.286 21 H -0.300 1.300 22 H -0.269 1.269 23 C 0.152 3.848 24 C -0.168 4.168 25 C 0.066 3.934 26 O -0.356 6.356 27 C -0.107 4.107 28 C -0.145 4.145 29 H 0.039 0.961 30 H 0.084 0.916 31 H 0.040 0.960 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.103 0.897 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.099 0.901 38 H 0.400 0.600 39 H 0.073 0.927 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.043 0.957 43 H 0.264 0.736 44 H 0.043 0.957 45 H 0.032 0.968 46 H 0.066 0.934 47 H 0.055 0.945 48 H 0.060 0.940 49 H 0.058 0.942 50 H 0.072 0.928 51 H 0.074 0.926 52 H 0.065 0.935 53 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.791 7.949 -20.307 24.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.302 6.302 3 C 0.034 3.966 4 C -0.168 4.168 5 C -0.130 4.130 6 C -0.133 4.133 7 C 0.303 3.697 8 O -0.415 6.415 9 N -0.370 5.370 10 C -0.009 4.009 11 C 0.004 3.996 12 H 0.086 0.914 13 C -0.012 4.012 14 N -0.321 5.321 15 C -0.403 4.403 16 H 0.094 0.906 17 C -0.159 4.159 18 N -0.535 5.535 19 Si 0.708 3.292 20 H -0.213 1.213 21 H -0.228 1.228 22 H -0.193 1.193 23 C 0.024 3.976 24 C -0.209 4.209 25 C -0.012 4.012 26 O -0.274 6.274 27 C -0.145 4.145 28 C -0.183 4.183 29 H 0.057 0.943 30 H 0.102 0.898 31 H 0.058 0.942 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.121 0.879 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.117 0.883 38 H 0.234 0.766 39 H 0.091 0.909 40 H 0.097 0.903 41 H 0.099 0.901 42 H 0.062 0.938 43 H 0.074 0.926 44 H 0.061 0.939 45 H 0.050 0.950 46 H 0.084 0.916 47 H 0.074 0.926 48 H 0.078 0.922 49 H 0.076 0.924 50 H 0.091 0.909 51 H 0.093 0.907 52 H 0.084 0.916 53 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -10.204 7.070 -20.660 24.102 hybrid contribution 0.514 0.680 0.814 1.178 sum -9.690 7.750 -19.846 23.405 Atomic orbital electron populations 1.22771 0.81513 1.02634 0.99682 1.87958 1.19237 1.28021 1.95009 1.22173 0.95138 0.84117 0.95163 1.21842 0.95458 0.98608 1.00925 1.21270 1.01534 0.96289 0.93943 1.21416 0.95713 0.99576 0.96641 1.20497 0.81156 0.86280 0.81735 1.90635 1.54411 1.30595 1.65883 1.45940 1.49580 1.29471 1.12040 1.21692 0.94273 0.92847 0.92052 1.21973 0.97795 0.86206 0.93659 0.91399 1.21040 0.98143 0.95610 0.86445 1.44099 1.59385 1.26782 1.01832 1.18695 0.96632 1.35895 0.89099 0.90644 1.25520 0.97716 0.97167 0.95489 1.69885 1.35709 1.50233 0.97655 0.86884 0.87974 0.76706 0.77586 1.21330 1.22831 1.19338 1.20619 0.92213 0.85850 0.98917 1.23499 0.99137 0.99933 0.98376 1.22420 0.96781 0.94973 0.87024 1.87598 1.69995 1.24024 1.45748 1.21483 0.94874 0.97342 1.00808 1.22065 1.01626 0.96901 0.97718 0.94279 0.89765 0.94177 0.92627 0.91750 0.87908 0.91501 0.90637 0.88320 0.76585 0.90903 0.90350 0.90071 0.93841 0.92576 0.93948 0.94969 0.91561 0.92640 0.92170 0.92411 0.90945 0.90717 0.91581 0.90767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.82 101.05 1.09 1.34 16 2 O -0.38 -4.41 10.35 -35.23 -0.36 -4.78 16 3 C 0.09 0.90 2.61 -26.73 -0.07 0.83 16 4 C -0.13 -1.39 5.28 -26.73 -0.14 -1.54 16 5 C -0.09 -0.81 5.09 -26.73 -0.14 -0.95 16 6 C -0.11 -0.98 3.01 -91.77 -0.28 -1.25 16 7 C 0.52 6.35 5.64 -10.99 -0.06 6.29 16 8 O -0.54 -8.47 13.66 5.55 0.08 -8.39 16 9 N -0.72 -8.57 5.32 -60.29 -0.32 -8.89 16 10 C 0.12 1.61 5.24 -4.04 -0.02 1.59 16 11 C 0.06 1.00 2.10 -29.64 -0.06 0.93 16 12 H 0.07 1.10 6.77 -51.93 -0.35 0.75 16 13 C 0.11 2.12 5.58 -4.93 -0.03 2.09 16 14 N -0.60 -13.71 2.16 -174.50 -0.38 -14.09 16 15 C -0.27 -7.39 9.93 -15.06 -0.15 -7.54 16 16 H 0.08 2.17 8.06 -52.48 -0.42 1.75 16 17 C 0.04 1.20 5.27 -17.43 -0.09 1.11 16 18 N -0.89 -26.62 13.97 55.49 0.78 -25.85 16 19 Si 0.88 22.10 25.24 -169.99 -4.29 17.81 16 20 H -0.29 -7.03 6.74 56.52 0.38 -6.65 16 21 H -0.30 -7.65 7.11 56.52 0.40 -7.25 16 22 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 23 C 0.15 3.29 4.30 -4.43 -0.02 3.27 16 24 C -0.17 -3.07 6.75 -24.34 -0.16 -3.24 16 25 C 0.07 1.04 6.38 38.32 0.24 1.28 16 26 O -0.36 -5.75 9.54 -31.94 -0.30 -6.06 16 27 C -0.11 -0.80 5.35 -26.75 -0.14 -0.95 16 28 C -0.15 -1.38 5.32 -26.76 -0.14 -1.52 16 29 H 0.04 0.26 8.08 -51.93 -0.42 -0.16 16 30 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.04 0.28 7.87 -51.93 -0.41 -0.12 16 32 H 0.06 0.45 7.79 -51.93 -0.40 0.05 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.10 1.43 5.51 -51.93 -0.29 1.15 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 37 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.40 4.09 7.74 -40.82 -0.32 3.77 16 39 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.08 1.50 8.00 -51.93 -0.42 1.08 16 42 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 43 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 44 H 0.04 1.02 3.45 -51.93 -0.18 0.84 16 45 H 0.03 0.67 7.99 -51.93 -0.41 0.26 16 46 H 0.07 1.27 8.14 -51.92 -0.42 0.84 16 47 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 48 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 49 H 0.06 0.95 6.66 -51.93 -0.35 0.61 16 50 H 0.07 0.50 7.56 -51.93 -0.39 0.11 16 51 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 52 H 0.07 0.57 7.87 -51.93 -0.41 0.16 16 53 H 0.07 0.89 7.22 -51.93 -0.37 0.52 16 LS Contribution 396.38 15.07 5.97 5.97 Total: -1.00 -32.07 396.38 -8.37 -40.43 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -9.37 Total: 2.07 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: -0.17 Total: 1.76 kcal Atomic # 7 Polarization: -48.90 SS G_CDS: 0.08 Total: -48.82 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: -0.59 Total: -19.22 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.29 Total: 17.81 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.07 -8.37 -40.43 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073752590.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.631 kcal (2) G-P(sol) polarization free energy of solvation -32.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.00 seconds