Wall clock time and date at job start Sat Apr 11 2020 06:12:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42897 * 113.99757 * 2 1 4 4 H 1.08995 * 110.06143 * 28.58058 * 3 2 1 5 5 C 1.54268 * 110.03108 * 267.16128 * 3 2 1 6 6 C 1.54882 * 104.19921 * 264.32699 * 5 3 2 7 7 C 1.54972 * 102.77637 * 322.08264 * 6 5 3 8 8 C 1.53878 * 110.03360 * 149.99744 * 3 2 1 9 9 H 1.09001 * 110.03068 * 359.95128 * 8 3 2 10 10 C 1.50704 * 110.03322 * 238.56526 * 8 3 2 11 11 O 1.21277 * 119.99655 * 343.73329 * 10 8 3 12 12 N 1.34774 * 119.99673 * 163.72553 * 10 8 3 13 13 C 1.46923 * 120.63325 * 355.74486 * 12 10 8 14 14 C 1.53195 * 108.77649 * 233.58347 * 13 12 10 15 15 C 1.53038 * 109.31214 * 305.36589 * 14 13 12 16 16 N 1.46499 * 109.46087 * 181.38308 * 15 14 13 17 17 C 1.36929 * 119.99986 * 300.00366 * 16 15 14 18 18 H 1.08004 * 120.00320 * 41.45630 * 17 16 15 19 19 C 1.38815 * 120.00161 * 221.45868 * 17 16 15 20 20 N 1.31623 * 119.99827 * 19.75166 * 19 17 16 21 21 Si 1.86800 * 120.00463 * 199.74906 * 19 17 16 22 22 H 1.48497 * 109.47222 * 179.97438 * 21 19 17 23 23 H 1.48506 * 109.46854 * 300.00253 * 21 19 17 24 24 H 1.48502 * 109.46761 * 59.99680 * 21 19 17 25 25 C 1.46502 * 119.99957 * 120.00135 * 16 15 14 26 26 C 1.53001 * 109.46905 * 276.28071 * 25 16 15 27 27 O 1.42909 * 109.47126 * 65.00123 * 26 25 16 28 28 C 1.53044 * 109.53873 * 61.36338 * 15 14 13 29 29 C 1.46928 * 120.62598 * 175.72144 * 12 10 8 30 30 H 1.09001 * 109.47491 * 300.00036 * 1 2 3 31 31 H 1.08997 * 109.47254 * 60.00749 * 1 2 3 32 32 H 1.09006 * 109.46639 * 180.02562 * 1 2 3 33 33 H 1.08998 * 110.48320 * 23.00374 * 5 3 2 34 34 H 1.08999 * 110.48468 * 145.64260 * 5 3 2 35 35 H 1.08996 * 110.75912 * 80.37216 * 6 5 3 36 36 H 1.09001 * 110.76041 * 203.56007 * 6 5 3 37 37 H 1.08995 * 110.47534 * 279.23591 * 7 6 5 38 38 H 1.09005 * 110.52541 * 156.56562 * 7 6 5 39 39 H 1.09002 * 109.58564 * 113.79502 * 13 12 10 40 40 H 1.08995 * 109.58717 * 353.37380 * 13 12 10 41 41 H 1.09002 * 109.49635 * 185.41380 * 14 13 12 42 42 H 1.08997 * 109.51901 * 65.33499 * 14 13 12 43 43 H 1.09002 * 109.46155 * 301.35896 * 15 14 13 44 44 H 0.96999 * 120.00379 * 180.02562 * 20 19 17 45 45 H 1.08990 * 109.47264 * 36.27884 * 25 16 15 46 46 H 1.08998 * 109.46863 * 156.28337 * 25 16 15 47 47 H 1.08994 * 109.47152 * 184.99730 * 26 25 16 48 48 H 1.08996 * 109.47356 * 305.00242 * 26 25 16 49 49 H 0.96700 * 114.00028 * 180.02562 * 27 26 25 50 50 H 1.09000 * 109.49446 * 58.58619 * 28 15 14 51 51 H 1.08999 * 109.50133 * 178.68252 * 28 15 14 52 52 H 1.09004 * 109.58564 * 246.20547 * 29 12 10 53 53 H 1.08995 * 109.58899 * 6.48577 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 1 1.3408 2.0127 0.4898 5 6 2.2906 1.7590 -1.4476 6 6 3.7774 1.3922 -1.6793 7 6 4.4274 1.7149 -0.3100 8 6 3.3683 1.2779 0.7229 9 1 3.5836 0.2688 1.0745 10 6 3.3541 2.2371 1.8851 11 8 2.4956 3.0909 1.9562 12 7 4.2952 2.1461 2.8455 13 6 5.2852 1.0607 2.8230 14 6 5.2572 0.3397 4.1744 15 6 5.4675 1.3590 5.2963 16 7 5.4743 0.6684 6.5883 17 6 4.3758 -0.0438 6.9897 18 1 3.8433 -0.6604 6.2807 19 6 3.9465 0.0268 8.3079 20 7 4.3190 1.0345 9.0683 21 14 2.8403 -1.3084 9.0028 22 1 2.5265 -1.0026 10.4217 23 1 1.5809 -1.3659 8.2180 24 1 3.5346 -2.6186 8.9212 25 6 6.6563 0.7396 7.4508 26 6 7.6710 -0.3188 7.0138 27 8 8.1427 -0.0128 5.6999 28 6 4.3335 2.3866 5.2735 29 6 4.3510 3.1307 3.9346 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0278 0.0005 33 1 1.6513 1.2200 -2.1468 34 1 2.1432 2.8345 -1.5457 35 1 3.8818 0.3333 -1.9157 36 1 4.2085 2.0071 -2.4693 37 1 4.6257 2.7833 -0.2244 38 1 5.3465 1.1436 -0.1791 39 1 6.2783 1.4755 2.6506 40 1 5.0379 0.3570 2.0282 41 1 6.0524 -0.4052 4.2058 42 1 4.2931 -0.1516 4.3051 43 1 6.4207 1.8673 5.1512 44 1 4.0193 1.0837 9.9895 45 1 7.1060 1.7292 7.3699 46 1 6.3633 0.5570 8.4846 47 1 8.5107 -0.3260 7.7086 48 1 7.1945 -1.2991 7.0096 49 1 8.7905 -0.6439 5.3577 50 1 3.3778 1.8763 5.3936 51 1 4.4712 3.0985 6.0872 52 1 5.2680 3.7144 3.8529 53 1 3.4887 3.7944 3.8717 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098410171.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:45 Heat of formation + Delta-G solvation = -137.572128 kcal Electronic energy + Delta-G solvation = -32178.642090 eV Core-core repulsion = 28049.714257 eV Total energy + Delta-G solvation = -4128.927834 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.66955 -39.79539 -38.82061 -37.60208 -36.68000 -36.24407 -33.83069 -32.44943 -31.91876 -30.19458 -29.27847 -29.14414 -27.22097 -26.56803 -24.87501 -24.14759 -22.77618 -22.05455 -21.66530 -21.07568 -19.80284 -18.91964 -18.18015 -17.92547 -17.37139 -17.11369 -16.68554 -16.50895 -16.24813 -16.22026 -15.86288 -15.37813 -15.21847 -15.07343 -14.86157 -14.68839 -14.50011 -14.10647 -14.04224 -13.64301 -13.43537 -13.28055 -13.10497 -13.04494 -12.75337 -12.63951 -12.56379 -12.46854 -12.33410 -12.28692 -12.16944 -11.96733 -11.93436 -11.71299 -11.66475 -11.57066 -11.35878 -11.05654 -10.72491 -10.62478 -10.56762 -10.47672 -9.63513 -8.43414 -7.81068 -5.43820 1.43434 1.45182 1.51114 1.54874 1.95667 2.50260 2.81727 3.25110 3.35836 3.55069 3.59127 3.77532 3.81475 3.93339 4.13493 4.19367 4.28594 4.33856 4.38698 4.41555 4.43654 4.45361 4.48481 4.54038 4.61280 4.64944 4.70544 4.71461 4.75651 4.79667 4.82182 4.85828 4.91471 4.92407 4.97023 5.01328 5.14710 5.18090 5.18157 5.26812 5.35874 5.41700 5.47849 5.60756 5.65767 5.70590 5.78801 6.22820 6.43745 6.52478 7.11462 7.15839 7.23873 7.91847 8.48522 9.15398 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.012639 B = 0.003393 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2214.815655 B = 8251.354051 C = 9270.737131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.399 6.399 3 C 0.085 3.915 4 H 0.059 0.941 5 C -0.139 4.139 6 C -0.111 4.111 7 C -0.103 4.103 8 C -0.110 4.110 9 H 0.112 0.888 10 C 0.517 3.483 11 O -0.590 6.590 12 N -0.601 5.601 13 C 0.115 3.885 14 C -0.124 4.124 15 C 0.189 3.811 16 N -0.586 5.586 17 C -0.252 4.252 18 H 0.046 0.954 19 C -0.030 4.030 20 N -0.917 5.917 21 Si 0.946 3.054 22 H -0.293 1.293 23 H -0.285 1.285 24 H -0.275 1.275 25 C 0.156 3.844 26 C 0.072 3.928 27 O -0.573 6.573 28 C -0.122 4.122 29 C 0.122 3.878 30 H 0.029 0.971 31 H 0.056 0.944 32 H 0.101 0.899 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.066 0.934 38 H 0.100 0.900 39 H 0.093 0.907 40 H 0.104 0.896 41 H 0.080 0.920 42 H 0.032 0.968 43 H 0.060 0.940 44 H 0.250 0.750 45 H 0.021 0.979 46 H 0.066 0.934 47 H 0.047 0.953 48 H 0.029 0.971 49 H 0.382 0.618 50 H 0.028 0.972 51 H 0.044 0.956 52 H 0.085 0.915 53 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.284 -1.738 -20.514 21.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.318 6.318 3 C 0.027 3.973 4 H 0.077 0.923 5 C -0.177 4.177 6 C -0.148 4.148 7 C -0.141 4.141 8 C -0.131 4.131 9 H 0.130 0.870 10 C 0.306 3.694 11 O -0.472 6.472 12 N -0.332 5.332 13 C -0.007 4.007 14 C -0.163 4.163 15 C 0.082 3.918 16 N -0.306 5.306 17 C -0.383 4.383 18 H 0.063 0.937 19 C -0.227 4.227 20 N -0.561 5.561 21 Si 0.775 3.225 22 H -0.220 1.220 23 H -0.211 1.211 24 H -0.201 1.201 25 C 0.030 3.970 26 C -0.008 4.008 27 O -0.380 6.380 28 C -0.163 4.163 29 C -0.001 4.001 30 H 0.048 0.952 31 H 0.075 0.925 32 H 0.120 0.880 33 H 0.100 0.900 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.108 0.892 37 H 0.085 0.915 38 H 0.119 0.881 39 H 0.111 0.889 40 H 0.122 0.878 41 H 0.099 0.901 42 H 0.051 0.949 43 H 0.078 0.922 44 H 0.059 0.941 45 H 0.039 0.961 46 H 0.084 0.916 47 H 0.065 0.935 48 H 0.047 0.953 49 H 0.230 0.770 50 H 0.047 0.953 51 H 0.063 0.937 52 H 0.103 0.897 53 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.523 -0.913 -20.187 20.513 hybrid contribution -0.980 -0.734 1.536 1.964 sum 2.543 -1.648 -18.651 18.896 Atomic orbital electron populations 1.22922 0.80046 1.03733 1.00236 1.87841 1.20899 1.27900 1.95152 1.22747 0.93521 0.84443 0.96587 0.92311 1.22815 0.98821 1.01341 0.94696 1.22461 0.93472 1.02572 0.96317 1.22348 0.96971 1.01840 0.92939 1.22035 0.97545 0.99683 0.93857 0.87019 1.20959 0.79775 0.84953 0.83675 1.90613 1.38172 1.39688 1.78692 1.48193 1.31466 1.28898 1.24618 1.22004 0.92217 0.88418 0.98099 1.22105 1.00989 0.98988 0.94258 1.20318 0.94749 0.90717 0.85989 1.43860 1.11632 1.57586 1.17547 1.18932 1.06064 1.19358 0.93945 0.93689 1.25833 0.99325 0.98069 0.99494 1.70130 1.48881 1.29371 1.07721 0.85699 0.79335 0.80552 0.76951 1.21951 1.21097 1.20058 1.20785 0.85710 0.94622 0.95890 1.22741 0.95770 0.98561 0.83730 1.86494 1.63855 1.55225 1.32398 1.22135 1.00280 0.98687 0.95155 1.21529 1.02411 0.90802 0.85385 0.95205 0.92538 0.88046 0.89984 0.90755 0.90172 0.89242 0.91511 0.88105 0.88900 0.87805 0.90126 0.94926 0.92222 0.94083 0.96087 0.91612 0.93515 0.95267 0.76996 0.95286 0.93691 0.89736 0.91322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 10.85 113.37 1.23 1.78 16 2 O -0.40 -10.15 10.25 -148.98 -1.53 -11.67 16 3 C 0.09 2.13 2.95 31.32 0.09 2.22 16 4 H 0.06 1.79 6.20 -2.39 -0.01 1.78 16 5 C -0.14 -2.55 6.57 31.67 0.21 -2.34 16 6 C -0.11 -1.60 6.91 31.91 0.22 -1.38 16 7 C -0.10 -1.76 6.11 31.70 0.19 -1.57 16 8 C -0.11 -2.67 2.18 -10.81 -0.02 -2.69 16 9 H 0.11 2.66 6.33 -2.39 -0.02 2.64 16 10 C 0.52 16.51 6.76 87.66 0.59 17.10 16 11 O -0.59 -23.19 14.77 -3.02 -0.04 -23.23 16 12 N -0.60 -18.58 2.97 -818.92 -2.43 -21.01 16 13 C 0.11 2.94 6.20 86.36 0.54 3.48 16 14 C -0.12 -4.23 5.30 30.67 0.16 -4.07 16 15 C 0.19 7.63 1.94 45.02 0.09 7.72 16 16 N -0.59 -27.91 2.33 -677.89 -1.58 -29.49 16 17 C -0.25 -13.44 8.17 84.04 0.69 -12.76 16 18 H 0.05 2.48 6.94 -2.91 -0.02 2.46 16 19 C -0.03 -1.62 4.89 84.86 0.42 -1.20 16 20 N -0.92 -52.85 11.76 21.65 0.25 -52.60 16 21 Si 0.95 44.56 29.60 68.60 2.03 46.59 16 22 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 23 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 24 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 25 C 0.16 7.07 5.59 86.38 0.48 7.55 16 26 C 0.07 2.55 7.39 71.98 0.53 3.08 16 27 O -0.57 -17.43 12.12 -148.98 -1.81 -19.23 16 28 C -0.12 -5.17 5.31 30.67 0.16 -5.01 16 29 C 0.12 4.20 6.44 86.36 0.56 4.75 16 30 H 0.03 0.68 8.10 -2.39 -0.02 0.66 16 31 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.10 1.68 8.14 -2.38 -0.02 1.66 16 33 H 0.08 1.34 8.07 -2.39 -0.02 1.32 16 34 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.07 1.23 7.85 -2.39 -0.02 1.21 16 38 H 0.10 1.28 8.04 -2.38 -0.02 1.26 16 39 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.10 2.15 5.35 -2.39 -0.01 2.13 16 41 H 0.08 2.67 7.63 -2.39 -0.02 2.65 16 42 H 0.03 1.30 7.09 -2.39 -0.02 1.28 16 43 H 0.06 2.35 7.54 -2.39 -0.02 2.33 16 44 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 45 H 0.02 0.95 8.05 -2.39 -0.02 0.93 16 46 H 0.07 3.39 5.86 -2.39 -0.01 3.38 16 47 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 48 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 49 H 0.38 7.52 9.12 -74.06 -0.68 6.85 16 50 H 0.03 1.42 7.71 -2.39 -0.02 1.40 16 51 H 0.04 2.07 8.14 -2.39 -0.02 2.05 16 52 H 0.08 2.51 8.14 -2.38 -0.02 2.49 16 53 H 0.07 2.56 7.00 -2.39 -0.02 2.55 16 Total: -1.00 -69.79 405.26 1.25 -68.54 By element: Atomic # 1 Polarization: 25.22 SS G_CDS: 0.22 Total: 25.44 kcal Atomic # 6 Polarization: 10.53 SS G_CDS: 6.13 Total: 16.66 kcal Atomic # 7 Polarization: -99.34 SS G_CDS: -3.76 Total: -103.10 kcal Atomic # 8 Polarization: -50.76 SS G_CDS: -3.38 Total: -54.14 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -69.79 1.25 -68.54 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098410171.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.036 kcal (2) G-P(sol) polarization free energy of solvation -69.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds