Wall clock time and date at job start Sat Apr 11 2020 06:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42895 * 113.99960 * 2 1 4 4 H 1.08998 * 110.01450 * 29.94651 * 3 2 1 5 5 C 1.54259 * 110.04018 * 268.54833 * 3 2 1 6 6 C 1.54886 * 104.19988 * 217.06151 * 5 3 2 7 7 C 1.54888 * 102.74985 * 37.93760 * 6 5 3 8 8 H 1.09002 * 110.48135 * 80.74218 * 7 6 5 9 9 C 1.50699 * 110.48500 * 203.24925 * 7 6 5 10 10 O 1.21284 * 120.00078 * 96.00424 * 9 7 6 11 11 N 1.34773 * 119.99891 * 275.99662 * 9 7 6 12 12 C 1.46929 * 120.62918 * 185.49587 * 11 9 7 13 13 C 1.53629 * 108.54341 * 126.37377 * 12 11 9 14 14 C 1.53039 * 109.24163 * 54.85419 * 13 12 11 15 15 N 1.46501 * 109.44378 * 178.49733 * 14 13 12 16 16 C 1.36934 * 119.99851 * 60.06759 * 15 14 13 17 17 H 1.07999 * 119.99826 * 319.57821 * 16 15 14 18 18 C 1.38815 * 120.00025 * 139.58482 * 16 15 14 19 19 N 1.31621 * 120.00186 * 341.56863 * 18 16 15 20 20 Si 1.86805 * 120.00005 * 161.56680 * 18 16 15 21 21 H 1.48502 * 109.47079 * 89.99829 * 20 18 16 22 22 H 1.48501 * 109.47219 * 210.00233 * 20 18 16 23 23 H 1.48499 * 109.46867 * 329.99768 * 20 18 16 24 24 C 1.46495 * 119.99809 * 240.05948 * 15 14 13 25 25 C 1.53000 * 109.47336 * 83.75508 * 24 15 14 26 26 O 1.42908 * 109.47118 * 64.99574 * 25 24 15 27 27 C 1.53038 * 109.53754 * 298.51183 * 14 13 12 28 28 C 1.46922 * 120.63481 * 5.78032 * 11 9 7 29 29 C 1.54222 * 110.06272 * 151.31516 * 3 2 1 30 30 H 1.09001 * 109.47514 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47462 * 299.99397 * 1 2 3 32 32 H 1.08996 * 109.47347 * 59.99542 * 1 2 3 33 33 H 1.08995 * 110.49002 * 98.37605 * 5 3 2 34 34 H 1.09010 * 110.59637 * 335.79289 * 5 3 2 35 35 H 1.09008 * 110.75221 * 279.62548 * 6 5 3 36 36 H 1.08995 * 110.75789 * 156.25799 * 6 5 3 37 37 H 1.09006 * 109.58485 * 246.20518 * 12 11 9 38 38 H 1.09002 * 109.58800 * 6.62874 * 12 11 9 39 39 H 1.09003 * 109.63138 * 294.86158 * 13 12 11 40 40 H 1.08998 * 109.42887 * 174.72888 * 13 12 11 41 41 H 1.09000 * 109.46081 * 58.53568 * 14 13 12 42 42 H 0.96993 * 120.00208 * 179.97438 * 19 18 16 43 43 H 1.09000 * 109.47394 * 203.75203 * 24 15 14 44 44 H 1.09004 * 109.47470 * 323.75217 * 24 15 14 45 45 H 1.08995 * 109.47528 * 184.99574 * 25 24 15 46 46 H 1.09000 * 109.46991 * 304.99871 * 25 24 15 47 47 H 0.96696 * 114.00026 * 180.02562 * 26 25 24 48 48 H 1.08993 * 109.50006 * 301.41268 * 27 14 13 49 49 H 1.09002 * 109.49629 * 181.31682 * 27 14 13 50 50 H 1.08999 * 109.58433 * 353.36644 * 28 11 9 51 51 H 1.08995 * 109.59030 * 113.65079 * 28 11 9 52 52 H 1.09000 * 110.14629 * 0.06119 * 29 3 2 53 53 H 1.08998 * 110.09027 * 238.52668 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3512 2.0072 0.5112 5 6 2.2587 1.7734 -1.4487 6 6 3.5947 2.5533 -1.3722 7 6 4.4190 1.7207 -0.3591 8 1 4.8642 0.8551 -0.8497 9 6 5.4872 2.5718 0.2776 10 8 5.2852 3.0943 1.3533 11 7 6.6671 2.7523 -0.3482 12 6 7.7610 3.4782 0.3114 13 6 9.0175 2.5945 0.2887 14 6 9.3177 2.1817 -1.1540 15 7 10.5357 1.3682 -1.1851 16 6 10.5912 0.1916 -0.4868 17 1 10.1572 0.1285 0.5002 18 6 11.2053 -0.9199 -1.0474 19 7 11.4078 -0.9747 -2.3468 20 14 11.7445 -2.3381 0.0424 21 1 10.6365 -3.3196 0.1619 22 1 12.9302 -3.0007 -0.5579 23 1 12.0955 -1.8213 1.3896 24 6 11.6941 1.8134 -1.9635 25 6 12.5176 2.8002 -1.1334 26 8 13.0621 2.1276 0.0040 27 6 8.1462 1.3672 -1.7076 28 6 6.8819 2.2322 -1.7054 29 6 3.3863 1.2718 0.6953 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.4534 2.4280 -1.7817 34 1 2.3544 0.9176 -2.1171 35 1 3.4310 3.5642 -0.9986 36 1 4.0859 2.5746 -2.3449 37 1 7.9558 4.4088 -0.2218 38 1 7.4848 3.6967 1.3430 39 1 8.8499 1.7040 0.8946 40 1 9.8620 3.1545 0.6902 41 1 9.4608 3.0732 -1.7646 42 1 11.8372 -1.7512 -2.7384 43 1 12.3110 0.9527 -2.2217 44 1 11.3527 2.3025 -2.8758 45 1 13.3288 3.1990 -1.7424 46 1 11.8778 3.6173 -0.8003 47 1 13.5969 2.6939 0.5770 48 1 7.9869 0.4883 -1.0831 49 1 8.3707 1.0537 -2.7272 50 1 6.0255 1.6282 -2.0050 51 1 7.0039 3.0632 -2.4001 52 1 3.6122 0.2601 1.0321 53 1 3.3948 1.9582 1.5421 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098413861.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:55 Heat of formation + Delta-G solvation = -136.413146 kcal Electronic energy + Delta-G solvation = -31630.005316 eV Core-core repulsion = 27501.127740 eV Total energy + Delta-G solvation = -4128.877577 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.53426 -39.76836 -38.93204 -37.65170 -36.65023 -36.21278 -33.77178 -32.25886 -31.91177 -29.97276 -29.62710 -29.18036 -27.03080 -26.48483 -24.92915 -24.08312 -22.95743 -21.97899 -21.58404 -21.08896 -19.77392 -18.78806 -18.17504 -17.98975 -17.51882 -17.13952 -16.77280 -16.56071 -16.09291 -15.84343 -15.77761 -15.58289 -15.22730 -14.84367 -14.76863 -14.57996 -14.40358 -14.37761 -14.01497 -13.68787 -13.33934 -13.23616 -13.06913 -12.99801 -12.88738 -12.72347 -12.56576 -12.44561 -12.33845 -12.26671 -12.16771 -12.07599 -11.81923 -11.71982 -11.58742 -11.54231 -11.40899 -11.13297 -10.70163 -10.60984 -10.48450 -10.39148 -9.59803 -8.39042 -7.73957 -5.33602 1.42020 1.45559 1.54560 1.58967 2.06261 2.55485 2.87895 3.36273 3.38083 3.54926 3.56696 3.66956 3.84555 3.96175 4.16287 4.23273 4.25353 4.27040 4.36006 4.42247 4.46276 4.47387 4.47864 4.55917 4.58381 4.61793 4.64112 4.72415 4.74552 4.82372 4.84347 4.89337 4.91380 4.91933 4.95071 5.02563 5.07810 5.14460 5.17440 5.22240 5.22959 5.29500 5.50042 5.64583 5.70258 5.75902 5.83986 6.33924 6.46355 6.58496 7.17069 7.20989 7.31227 7.98885 8.49115 9.22846 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014077 B = 0.002926 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.623649 B = 9568.099068 C =10557.615527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.408 6.408 3 C 0.086 3.914 4 H 0.075 0.925 5 C -0.136 4.136 6 C -0.101 4.101 7 C -0.112 4.112 8 H 0.104 0.896 9 C 0.519 3.481 10 O -0.586 6.586 11 N -0.604 5.604 12 C 0.121 3.879 13 C -0.124 4.124 14 C 0.174 3.826 15 N -0.584 5.584 16 C -0.223 4.223 17 H 0.034 0.966 18 C -0.027 4.027 19 N -0.917 5.917 20 Si 0.938 3.062 21 H -0.288 1.288 22 H -0.293 1.293 23 H -0.283 1.283 24 C 0.144 3.856 25 C 0.066 3.934 26 O -0.578 6.578 27 C -0.125 4.125 28 C 0.115 3.885 29 C -0.112 4.112 30 H 0.092 0.908 31 H 0.047 0.953 32 H 0.054 0.946 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.072 0.928 39 H 0.031 0.969 40 H 0.064 0.936 41 H 0.069 0.931 42 H 0.246 0.754 43 H 0.057 0.943 44 H 0.050 0.950 45 H 0.046 0.954 46 H 0.040 0.960 47 H 0.375 0.625 48 H 0.035 0.965 49 H 0.060 0.940 50 H 0.101 0.899 51 H 0.094 0.906 52 H 0.066 0.934 53 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.952 10.883 -1.903 20.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.328 6.328 3 C 0.028 3.972 4 H 0.093 0.907 5 C -0.174 4.174 6 C -0.138 4.138 7 C -0.133 4.133 8 H 0.122 0.878 9 C 0.309 3.691 10 O -0.467 6.467 11 N -0.336 5.336 12 C -0.002 4.002 13 C -0.164 4.164 14 C 0.068 3.932 15 N -0.304 5.304 16 C -0.355 4.355 17 H 0.052 0.948 18 C -0.224 4.224 19 N -0.562 5.562 20 Si 0.768 3.232 21 H -0.215 1.215 22 H -0.220 1.220 23 H -0.209 1.209 24 C 0.018 3.982 25 C -0.014 4.014 26 O -0.383 6.383 27 C -0.165 4.165 28 C -0.007 4.007 29 C -0.150 4.150 30 H 0.111 0.889 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.109 0.891 34 H 0.099 0.901 35 H 0.092 0.908 36 H 0.115 0.885 37 H 0.106 0.894 38 H 0.091 0.909 39 H 0.050 0.950 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.055 0.945 43 H 0.075 0.925 44 H 0.068 0.932 45 H 0.064 0.936 46 H 0.059 0.941 47 H 0.221 0.779 48 H 0.054 0.946 49 H 0.078 0.922 50 H 0.119 0.881 51 H 0.112 0.888 52 H 0.084 0.916 53 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -17.168 10.351 -1.730 20.122 hybrid contribution 1.076 -0.671 1.058 1.651 sum -16.092 9.681 -0.672 18.792 Atomic orbital electron populations 1.22949 0.79780 1.03615 1.00846 1.87934 1.21272 1.28402 1.95154 1.22900 0.93731 0.84311 0.96239 0.90655 1.22850 0.97622 1.00674 0.96259 1.22423 0.94816 0.98141 0.98460 1.22140 0.94160 0.98831 0.98151 0.87839 1.20927 0.83202 0.80517 0.84456 1.90612 1.80520 1.51873 1.23707 1.48220 1.12629 1.55193 1.17519 1.21653 0.85375 0.94648 0.98478 1.22234 0.96468 0.98395 0.99311 1.20496 0.86238 0.92937 0.93558 1.43815 1.08937 1.21225 1.56386 1.18662 1.33768 0.87796 0.95235 0.94827 1.25578 1.02530 0.98717 0.95580 1.70057 1.46550 1.29745 1.09841 0.85751 0.77456 0.80659 0.79312 1.21489 1.21951 1.20914 1.20899 0.89300 0.96524 0.91484 1.22933 0.95745 0.95055 0.87621 1.86765 1.71105 1.41145 1.39313 1.22127 0.95151 0.98423 1.00844 1.21980 0.98393 0.98437 0.81939 1.22201 0.92962 1.01995 0.97884 0.88941 0.93429 0.92735 0.89084 0.90071 0.90826 0.88491 0.89394 0.90925 0.95024 0.91783 0.91335 0.94460 0.92507 0.93223 0.93599 0.94148 0.77919 0.94643 0.92172 0.88128 0.88773 0.91552 0.90507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 10.85 113.37 1.23 1.56 16 2 O -0.41 -8.69 10.27 -148.98 -1.53 -10.22 16 3 C 0.09 1.64 3.38 31.44 0.11 1.75 16 4 H 0.08 1.26 7.82 -2.39 -0.02 1.24 16 5 C -0.14 -2.05 6.55 31.67 0.21 -1.85 16 6 C -0.10 -1.67 6.09 31.88 0.19 -1.48 16 7 C -0.11 -2.60 2.23 -10.47 -0.02 -2.63 16 8 H 0.10 2.41 6.79 -2.39 -0.02 2.39 16 9 C 0.52 15.46 6.90 87.66 0.60 16.06 16 10 O -0.59 -21.33 14.94 -3.04 -0.05 -21.37 16 11 N -0.60 -17.14 2.97 -818.06 -2.43 -19.57 16 12 C 0.12 3.57 6.44 86.51 0.56 4.12 16 13 C -0.12 -4.41 5.31 30.82 0.16 -4.24 16 14 C 0.17 6.49 2.59 45.02 0.12 6.61 16 15 N -0.58 -27.16 2.30 -677.90 -1.56 -28.72 16 16 C -0.22 -12.11 8.02 84.03 0.67 -11.44 16 17 H 0.03 1.94 6.91 -2.91 -0.02 1.92 16 18 C -0.03 -1.54 4.94 84.86 0.42 -1.12 16 19 N -0.92 -52.98 11.59 21.65 0.25 -52.73 16 20 Si 0.94 46.80 29.59 68.60 2.03 48.83 16 21 H -0.29 -14.13 7.11 99.48 0.71 -13.43 16 22 H -0.29 -14.59 7.11 99.48 0.71 -13.88 16 23 H -0.28 -14.19 7.11 99.48 0.71 -13.49 16 24 C 0.14 6.40 5.53 86.38 0.48 6.88 16 25 C 0.07 2.40 7.38 71.98 0.53 2.93 16 26 O -0.58 -23.22 13.43 -148.98 -2.00 -25.22 16 27 C -0.13 -4.43 5.31 30.67 0.16 -4.27 16 28 C 0.11 2.86 6.23 86.36 0.54 3.40 16 29 C -0.11 -2.74 6.13 31.44 0.19 -2.55 16 30 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.05 0.58 8.10 -2.39 -0.02 0.56 16 32 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.08 1.26 8.08 -2.38 -0.02 1.24 16 35 H 0.07 1.26 8.05 -2.38 -0.02 1.24 16 36 H 0.10 1.27 7.56 -2.39 -0.02 1.26 16 37 H 0.09 2.13 8.14 -2.38 -0.02 2.11 16 38 H 0.07 2.32 7.04 -2.39 -0.02 2.30 16 39 H 0.03 1.34 7.08 -2.39 -0.02 1.32 16 40 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 41 H 0.07 2.25 7.88 -2.39 -0.02 2.24 16 42 H 0.25 13.98 8.31 -92.71 -0.77 13.21 16 43 H 0.06 3.03 5.72 -2.39 -0.01 3.02 16 44 H 0.05 2.01 8.05 -2.38 -0.02 1.99 16 45 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 46 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 47 H 0.37 10.58 9.12 -74.06 -0.68 9.90 16 48 H 0.03 1.50 7.71 -2.39 -0.02 1.48 16 49 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 50 H 0.10 2.10 4.95 -2.39 -0.01 2.09 16 51 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 52 H 0.07 1.78 7.97 -2.39 -0.02 1.76 16 53 H 0.08 2.12 6.75 -2.39 -0.02 2.10 16 Total: -1.00 -72.10 407.48 1.09 -71.00 By element: Atomic # 1 Polarization: 24.03 SS G_CDS: 0.22 Total: 24.25 kcal Atomic # 6 Polarization: 7.59 SS G_CDS: 6.15 Total: 13.74 kcal Atomic # 7 Polarization: -97.28 SS G_CDS: -3.73 Total: -101.02 kcal Atomic # 8 Polarization: -53.24 SS G_CDS: -3.58 Total: -56.82 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 2.03 Total: 48.83 kcal Total: -72.10 1.09 -71.00 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098413861.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.409 kcal (2) G-P(sol) polarization free energy of solvation -72.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds