Wall clock time and date at job start Sat Apr 11 2020 06:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42904 * 114.00445 * 2 1 4 4 C 1.52993 * 109.47566 * 180.02562 * 3 2 1 5 5 C 1.52993 * 109.47372 * 180.02562 * 4 3 2 6 6 C 1.50704 * 109.47371 * 180.02562 * 5 4 3 7 7 O 1.21275 * 119.99691 * 359.97438 * 6 5 4 8 8 N 1.34778 * 119.99963 * 180.02562 * 6 5 4 9 9 C 1.46501 * 119.99796 * 179.97438 * 8 6 5 10 10 H 1.09001 * 109.49676 * 35.06902 * 9 8 6 11 11 C 1.53182 * 109.49939 * 274.99859 * 9 8 6 12 12 N 1.46926 * 108.79235 * 185.36724 * 11 9 8 13 13 C 1.36938 * 120.64078 * 233.69592 * 12 11 9 14 14 H 1.08003 * 120.00089 * 151.83410 * 13 12 11 15 15 C 1.38809 * 120.00172 * 331.82658 * 13 12 11 16 16 N 1.31621 * 120.00027 * 343.06425 * 15 13 12 17 17 Si 1.86804 * 120.00090 * 163.05947 * 15 13 12 18 18 H 1.48495 * 109.46976 * 60.00567 * 17 15 13 19 19 H 1.48498 * 109.46993 * 180.02562 * 17 15 13 20 20 H 1.48507 * 109.46977 * 300.00168 * 17 15 13 21 21 C 1.46939 * 118.71557 * 53.66516 * 12 11 9 22 22 C 1.53091 * 108.78896 * 306.50367 * 21 12 11 23 23 C 1.53088 * 109.47330 * 294.29592 * 22 21 12 24 24 C 1.53110 * 109.15932 * 297.01671 * 23 22 21 25 25 O 1.42901 * 109.40838 * 302.51686 * 24 23 22 26 26 C 1.42904 * 114.13197 * 61.17673 * 25 24 23 27 27 C 1.53083 * 109.47362 * 174.62589 * 22 21 12 28 28 C 1.52933 * 109.49952 * 54.45589 * 22 21 12 29 29 H 1.08997 * 109.47309 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46566 * 299.99539 * 1 2 3 31 31 H 1.08997 * 109.47262 * 59.99340 * 1 2 3 32 32 H 1.09006 * 109.46567 * 59.99981 * 3 2 1 33 33 H 1.08999 * 109.47184 * 300.00747 * 3 2 1 34 34 H 1.08994 * 109.47274 * 59.99822 * 4 3 2 35 35 H 1.09008 * 109.46965 * 300.00206 * 4 3 2 36 36 H 1.09001 * 109.47052 * 59.99885 * 5 4 3 37 37 H 1.08999 * 109.47043 * 300.00089 * 5 4 3 38 38 H 0.96999 * 119.99977 * 359.97438 * 8 6 5 39 39 H 1.08998 * 109.58673 * 305.16143 * 11 9 8 40 40 H 1.08999 * 109.58448 * 65.57762 * 11 9 8 41 41 H 0.96997 * 119.99787 * 179.97438 * 16 15 13 42 42 H 1.09003 * 109.57939 * 66.29506 * 21 12 11 43 43 H 1.08999 * 109.58383 * 186.56828 * 21 12 11 44 44 H 1.09002 * 109.52334 * 56.92358 * 23 22 21 45 45 H 1.09005 * 109.52170 * 177.11411 * 23 22 21 46 46 H 1.09005 * 109.48252 * 182.53567 * 24 23 22 47 47 H 1.08997 * 109.47908 * 62.49971 * 24 23 22 48 48 H 1.09003 * 109.47913 * 178.83815 * 26 25 24 49 49 H 1.08994 * 109.48463 * 58.79504 * 26 25 24 50 50 H 1.08997 * 109.52536 * 182.87409 * 27 22 21 51 51 H 1.09002 * 109.52278 * 303.07260 * 27 22 21 52 52 H 1.08998 * 109.45379 * 178.81806 * 28 22 21 53 53 H 1.09001 * 109.45306 * 58.86683 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 4.1578 2.5823 0.0000 6 6 5.6601 2.4633 -0.0013 7 8 6.1816 1.3684 -0.0021 8 7 6.4241 3.5736 -0.0004 9 6 7.8845 3.4579 -0.0011 10 1 8.1805 2.5914 -0.5925 11 6 8.3848 3.2907 1.4370 12 7 9.8540 3.3057 1.4318 13 6 10.5644 2.2872 2.0091 14 1 11.5503 2.0414 1.6430 15 6 10.0175 1.5709 3.0648 16 7 8.9903 2.0578 3.7283 17 14 10.7391 -0.0843 3.5437 18 1 12.1631 0.0890 3.9274 19 1 9.9807 -0.6412 4.6925 20 1 10.6468 -1.0166 2.3914 21 6 10.5462 4.4343 0.7945 22 6 10.0202 4.5920 -0.6346 23 6 10.4142 3.3654 -1.4616 24 6 11.9409 3.2869 -1.5480 25 8 12.4468 4.4948 -2.1200 26 6 12.1501 5.6693 -1.3619 27 6 10.6319 5.8441 -1.2683 28 6 8.4968 4.7234 -0.6062 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3632 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 1.6886 1.8463 0.8901 33 1 1.6886 1.8464 -0.8899 34 1 3.8567 0.6439 -0.8908 35 1 3.8574 0.6435 0.8892 36 1 3.8365 3.1226 0.8904 37 1 3.8358 3.1237 -0.8895 38 1 6.0069 4.4493 0.0006 39 1 8.0133 4.1111 2.0509 40 1 8.0306 2.3414 1.8390 41 1 8.6079 1.5570 4.4658 42 1 10.3523 5.3470 1.3580 43 1 11.6184 4.2397 0.7721 44 1 10.0296 2.4647 -0.9832 45 1 9.9966 3.4530 -2.4646 46 1 12.2266 2.4410 -2.1734 47 1 12.3553 3.1565 -0.5484 48 1 12.5866 6.5389 -1.8532 49 1 12.5672 5.5701 -0.3598 50 1 10.2192 5.9855 -2.2671 51 1 10.4027 6.7134 -0.6519 52 1 8.1250 4.8567 -1.6221 53 1 8.2181 5.5865 -0.0016 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099566987.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:15 Heat of formation + Delta-G solvation = -144.044026 kcal Electronic energy + Delta-G solvation = -31716.787706 eV Core-core repulsion = 27587.579229 eV Total energy + Delta-G solvation = -4129.208476 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 4.01 seconds Orbital eigenvalues (eV) -41.54748 -40.52887 -38.89215 -38.33508 -35.82141 -35.29783 -34.61043 -32.80241 -31.94299 -31.31571 -28.74104 -28.22450 -27.35502 -26.59469 -24.68091 -24.42919 -23.61060 -22.94322 -21.62125 -21.23209 -19.39833 -18.62967 -18.13838 -17.42754 -17.30024 -17.10413 -16.91171 -16.73876 -16.43510 -16.14509 -15.99081 -15.77431 -15.53801 -15.32436 -15.14268 -14.90141 -14.53947 -14.25323 -14.11234 -13.77373 -13.48580 -13.07600 -13.01100 -12.99405 -12.95230 -12.79217 -12.59836 -12.47744 -12.36093 -12.24180 -12.12797 -12.03824 -11.96687 -11.88917 -11.84012 -11.63573 -11.09282 -10.89485 -10.80263 -10.59726 -10.54556 -10.21732 -10.02266 -8.66920 -7.89765 -5.34381 1.38410 1.44493 1.47953 1.75686 2.21291 2.47604 2.92408 3.03645 3.27215 3.63415 3.73014 3.78354 3.89075 3.95345 3.99362 4.16235 4.21334 4.24216 4.35530 4.39017 4.40726 4.42712 4.49507 4.51775 4.54041 4.58022 4.59778 4.61639 4.70817 4.78109 4.82676 4.86166 4.89830 4.91864 4.98392 5.07152 5.12015 5.14459 5.23468 5.26063 5.29134 5.35388 5.43393 5.52152 5.54106 5.61304 5.80574 6.27859 6.33246 6.35765 6.70973 7.12008 7.43853 7.84833 8.33806 9.14574 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.009794 B = 0.003371 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2858.263844 B = 8304.996864 C =10329.629416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.428 6.428 3 C 0.066 3.934 4 C -0.104 4.104 5 C -0.121 4.121 6 C 0.499 3.501 7 O -0.594 6.594 8 N -0.711 5.711 9 C 0.130 3.870 10 H 0.054 0.946 11 C 0.181 3.819 12 N -0.599 5.599 13 C -0.255 4.255 14 H 0.065 0.935 15 C -0.045 4.045 16 N -0.928 5.928 17 Si 0.953 3.047 18 H -0.268 1.268 19 H -0.296 1.296 20 H -0.287 1.287 21 C 0.152 3.848 22 C -0.068 4.068 23 C -0.130 4.130 24 C 0.066 3.934 25 O -0.396 6.396 26 C 0.054 3.946 27 C -0.130 4.130 28 C -0.094 4.094 29 H 0.090 0.910 30 H 0.051 0.949 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.057 0.943 35 H 0.043 0.957 36 H 0.119 0.881 37 H 0.134 0.866 38 H 0.415 0.585 39 H -0.002 1.002 40 H 0.041 0.959 41 H 0.246 0.754 42 H 0.019 0.981 43 H 0.052 0.948 44 H 0.052 0.948 45 H 0.070 0.930 46 H 0.095 0.905 47 H 0.039 0.961 48 H 0.116 0.884 49 H 0.044 0.956 50 H 0.083 0.917 51 H 0.089 0.911 52 H 0.083 0.917 53 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.374 10.340 -12.305 19.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.348 6.348 3 C -0.010 4.010 4 C -0.142 4.142 5 C -0.160 4.160 6 C 0.287 3.713 7 O -0.474 6.474 8 N -0.362 5.362 9 C 0.023 3.977 10 H 0.072 0.928 11 C 0.054 3.946 12 N -0.321 5.321 13 C -0.386 4.386 14 H 0.082 0.918 15 C -0.241 4.241 16 N -0.574 5.574 17 Si 0.781 3.219 18 H -0.193 1.193 19 H -0.222 1.222 20 H -0.214 1.214 21 C 0.027 3.973 22 C -0.070 4.070 23 C -0.168 4.168 24 C -0.011 4.011 25 O -0.316 6.316 26 C -0.023 4.023 27 C -0.168 4.168 28 C -0.132 4.132 29 H 0.109 0.891 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.075 0.925 35 H 0.062 0.938 36 H 0.137 0.863 37 H 0.152 0.848 38 H 0.252 0.748 39 H 0.016 0.984 40 H 0.060 0.940 41 H 0.055 0.945 42 H 0.037 0.963 43 H 0.070 0.930 44 H 0.070 0.930 45 H 0.089 0.911 46 H 0.113 0.887 47 H 0.057 0.943 48 H 0.134 0.866 49 H 0.062 0.938 50 H 0.102 0.898 51 H 0.107 0.893 52 H 0.102 0.898 53 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -10.848 9.350 -12.319 18.890 hybrid contribution -0.092 -0.939 1.313 1.617 sum -10.940 8.410 -11.005 17.651 Atomic orbital electron populations 1.22924 0.79275 1.03671 1.01145 1.87862 1.21773 1.29431 1.95686 1.22573 0.92072 0.84358 1.02001 1.21158 0.94128 0.96554 1.02369 1.21525 0.88327 0.98816 1.07349 1.21478 0.91332 0.83757 0.74743 1.90735 1.76437 1.28923 1.51284 1.45910 1.06379 1.09367 1.74586 1.21488 0.79351 0.98904 0.97928 0.92788 1.20771 0.83347 0.98687 0.91819 1.44070 1.01121 1.21684 1.65242 1.19324 1.00950 1.08884 1.09414 0.91775 1.25668 0.99544 1.02553 0.96356 1.70140 1.27566 1.37971 1.21692 0.85560 0.78287 0.81115 0.76906 1.19333 1.22206 1.21368 1.21196 0.95621 0.89319 0.91170 1.20920 0.95013 0.95573 0.95527 1.22028 0.96572 0.98667 0.99550 1.22509 0.93268 0.87236 0.98068 1.87840 1.77604 1.15428 1.50682 1.22776 0.95249 0.88095 0.96136 1.22122 0.95901 0.96841 1.01952 1.21633 0.94309 0.95917 1.01296 0.89105 0.93016 0.92552 0.91631 0.90698 0.92460 0.93795 0.86310 0.84825 0.74836 0.98362 0.94026 0.94510 0.96337 0.92956 0.92958 0.91090 0.88691 0.94279 0.86594 0.93795 0.89817 0.89277 0.89822 0.90500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 113.37 1.25 1.63 16 2 O -0.43 -10.19 10.70 -148.98 -1.59 -11.78 16 3 C 0.07 1.25 5.94 71.98 0.43 1.68 16 4 C -0.10 -2.66 4.87 30.59 0.15 -2.51 16 5 C -0.12 -2.51 5.70 29.85 0.17 -2.34 16 6 C 0.50 16.63 7.80 87.66 0.68 17.31 16 7 O -0.59 -27.51 15.65 -3.01 -0.05 -27.55 16 8 N -0.71 -21.19 5.08 -442.15 -2.25 -23.43 16 9 C 0.13 4.85 2.27 45.07 0.10 4.95 16 10 H 0.05 2.40 5.87 -2.39 -0.01 2.39 16 11 C 0.18 8.83 4.88 86.36 0.42 9.25 16 12 N -0.60 -29.70 2.40 -699.28 -1.68 -31.37 16 13 C -0.26 -14.31 9.58 84.03 0.81 -13.50 16 14 H 0.06 3.51 7.89 -2.91 -0.02 3.49 16 15 C -0.05 -2.65 4.92 84.86 0.42 -2.23 16 16 N -0.93 -57.15 11.20 21.65 0.24 -56.91 16 17 Si 0.95 47.77 29.59 68.60 2.03 49.80 16 18 H -0.27 -12.65 7.11 99.48 0.71 -11.95 16 19 H -0.30 -14.97 7.11 99.48 0.71 -14.26 16 20 H -0.29 -14.47 7.11 99.48 0.71 -13.76 16 21 C 0.15 5.96 4.60 86.33 0.40 6.36 16 22 C -0.07 -2.07 0.52 -52.12 -0.03 -2.10 16 23 C -0.13 -4.29 4.37 30.66 0.13 -4.15 16 24 C 0.07 2.08 6.57 72.02 0.47 2.55 16 25 O -0.40 -11.58 10.76 -148.98 -1.60 -13.18 16 26 C 0.05 1.28 6.57 72.02 0.47 1.75 16 27 C -0.13 -2.96 4.92 30.66 0.15 -2.80 16 28 C -0.09 -2.65 4.19 30.59 0.13 -2.52 16 29 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 33 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.06 1.67 8.10 -2.39 -0.02 1.65 16 35 H 0.04 1.42 8.10 -2.38 -0.02 1.40 16 36 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.13 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.41 8.46 8.60 -92.71 -0.80 7.66 16 39 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 40 H 0.04 2.48 6.06 -2.39 -0.01 2.47 16 41 H 0.25 14.93 8.31 -92.71 -0.77 14.15 16 42 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.05 2.09 4.85 -2.39 -0.01 2.07 16 44 H 0.05 2.14 6.11 -2.39 -0.01 2.12 16 45 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 46 H 0.09 2.76 8.14 -2.38 -0.02 2.75 16 47 H 0.04 1.39 6.48 -2.39 -0.02 1.37 16 48 H 0.12 2.09 8.14 -2.39 -0.02 2.07 16 49 H 0.04 1.13 6.73 -2.39 -0.02 1.12 16 50 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 51 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 52 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 53 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -79.79 402.76 1.35 -78.44 By element: Atomic # 1 Polarization: 22.56 SS G_CDS: 0.09 Total: 22.66 kcal Atomic # 6 Polarization: 7.18 SS G_CDS: 6.15 Total: 13.33 kcal Atomic # 7 Polarization: -108.03 SS G_CDS: -3.68 Total: -111.71 kcal Atomic # 8 Polarization: -49.27 SS G_CDS: -3.25 Total: -52.52 kcal Atomic # 14 Polarization: 47.77 SS G_CDS: 2.03 Total: 49.80 kcal Total: -79.79 1.35 -78.44 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099566987.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.602 kcal (2) G-P(sol) polarization free energy of solvation -79.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.01 seconds