Wall clock time and date at job start Sat Apr 11 2020 06:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42894 * 113.99920 * 2 1 4 4 C 1.53003 * 109.46756 * 180.02562 * 3 2 1 5 5 C 1.53007 * 109.47092 * 179.97438 * 4 3 2 6 6 C 1.50697 * 109.47242 * 179.97438 * 5 4 3 7 7 O 1.21282 * 120.00057 * 0.02562 * 6 5 4 8 8 N 1.34771 * 120.00016 * 180.02562 * 6 5 4 9 9 C 1.46502 * 120.00172 * 180.02562 * 8 6 5 10 10 H 1.09006 * 109.52610 * 324.90670 * 9 8 6 11 11 C 1.53186 * 109.50055 * 84.99921 * 9 8 6 12 12 N 1.46923 * 108.79063 * 174.64695 * 11 9 8 13 13 C 1.36936 * 120.63703 * 126.32890 * 12 11 9 14 14 H 1.08002 * 119.99963 * 207.47703 * 13 12 11 15 15 C 1.38807 * 120.00116 * 27.47557 * 13 12 11 16 16 N 1.31621 * 119.99926 * 17.82686 * 15 13 12 17 17 Si 1.86805 * 120.00359 * 197.82334 * 15 13 12 18 18 H 1.48493 * 109.47117 * 265.35862 * 17 15 13 19 19 H 1.48498 * 109.46643 * 25.35927 * 17 15 13 20 20 H 1.48498 * 109.47119 * 145.35677 * 17 15 13 21 21 C 1.46946 * 118.72954 * 306.60168 * 12 11 9 22 22 C 1.52654 * 109.02418 * 53.16600 * 21 12 11 23 23 C 1.53080 * 109.37152 * 65.88590 * 22 21 12 24 24 C 1.53112 * 109.15833 * 176.77265 * 23 22 21 25 25 O 1.42905 * 109.40732 * 302.52110 * 24 23 22 26 26 C 1.42903 * 114.13789 * 61.16825 * 25 24 23 27 27 C 1.53083 * 109.58361 * 185.56192 * 22 21 12 28 28 C 1.52950 * 109.56378 * 305.78660 * 22 21 12 29 29 H 1.08994 * 109.46940 * 59.99534 * 1 2 3 30 30 H 1.08997 * 109.47331 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46579 * 299.99883 * 1 2 3 32 32 H 1.09001 * 109.47320 * 60.00526 * 3 2 1 33 33 H 1.08996 * 109.47502 * 299.99922 * 3 2 1 34 34 H 1.08995 * 109.47337 * 60.00286 * 4 3 2 35 35 H 1.08998 * 109.47026 * 299.99557 * 4 3 2 36 36 H 1.09007 * 109.47003 * 59.99764 * 5 4 3 37 37 H 1.09000 * 109.47393 * 300.00322 * 5 4 3 38 38 H 0.97005 * 120.00269 * 0.02562 * 8 6 5 39 39 H 1.08994 * 109.58824 * 54.85482 * 11 9 8 40 40 H 1.09008 * 109.58574 * 294.43479 * 11 9 8 41 41 H 0.97000 * 120.00266 * 180.02562 * 16 15 13 42 42 H 1.09004 * 109.58325 * 173.00468 * 21 12 11 43 43 H 1.08997 * 109.58133 * 293.41648 * 21 12 11 44 44 H 1.09001 * 109.52718 * 296.68148 * 23 22 21 45 45 H 1.09004 * 109.52047 * 56.86926 * 23 22 21 46 46 H 1.08991 * 109.48193 * 182.53669 * 24 23 22 47 47 H 1.09001 * 109.48806 * 62.50600 * 24 23 22 48 48 H 1.08997 * 109.48621 * 178.84254 * 26 25 24 49 49 H 1.09004 * 109.48356 * 58.79343 * 26 25 24 50 50 H 1.08995 * 109.52711 * 303.25170 * 27 22 21 51 51 H 1.09002 * 109.51973 * 63.37764 * 27 22 21 52 52 H 1.08997 * 109.45881 * 301.02805 * 28 22 21 53 53 H 1.09004 * 109.44995 * 181.08075 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 6 4.1579 2.5823 -0.0013 6 6 5.6602 2.4633 -0.0013 7 8 6.1817 1.3683 -0.0013 8 7 6.4241 3.5735 -0.0013 9 6 7.8845 3.4579 -0.0019 10 1 8.1816 2.5910 0.5885 11 6 8.3838 3.2924 -1.4406 12 7 9.8530 3.3071 -1.4363 13 6 10.5627 2.2895 -2.0159 14 1 11.5533 2.0501 -1.6583 15 6 10.0091 1.5656 -3.0629 16 7 8.9841 2.0525 -3.7299 17 14 10.7186 -0.0994 -3.5254 18 1 11.7048 0.0703 -4.6224 19 1 11.3906 -0.6965 -2.3434 20 1 9.6242 -0.9954 -3.9777 21 6 10.5462 4.4317 -0.7929 22 6 10.0210 4.5907 0.6316 23 6 10.4140 3.3633 1.4576 24 6 9.9554 3.5636 2.9047 25 8 10.5375 4.7601 3.4259 26 6 10.1648 5.9462 2.7215 27 6 10.6322 5.8420 1.2672 28 6 8.4974 4.7227 0.6039 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 1.6887 1.8463 0.8900 33 1 1.6887 1.8464 -0.8899 34 1 3.8568 0.6438 -0.8908 35 1 3.8574 0.6435 0.8891 36 1 3.8366 3.1235 0.8887 37 1 3.8359 3.1230 -0.8912 38 1 6.0070 4.4493 -0.0009 39 1 8.0121 4.1137 -2.0531 40 1 8.0292 2.3437 -1.8436 41 1 8.5969 1.5465 -4.4613 42 1 11.6177 4.2331 -0.7657 43 1 10.3564 5.3469 -1.3537 44 1 9.9347 2.4764 1.0430 45 1 11.4966 3.2388 1.4325 46 1 10.2723 2.7126 3.5075 47 1 8.8689 3.6453 2.9338 48 1 10.6323 6.8109 3.1925 49 1 9.0810 6.0593 2.7478 50 1 11.7195 5.7714 1.2381 51 1 10.3097 6.7252 0.7157 52 1 8.2187 5.5863 0.0002 53 1 8.1261 4.8554 1.6202 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099566988.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:26 Heat of formation + Delta-G solvation = -143.499558 kcal Electronic energy + Delta-G solvation = -31820.776397 eV Core-core repulsion = 27691.591531 eV Total energy + Delta-G solvation = -4129.184866 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 2.53 seconds Orbital eigenvalues (eV) -41.63078 -40.49121 -38.88305 -38.36143 -35.81004 -35.32685 -34.60814 -32.82119 -32.01724 -31.20155 -28.66323 -28.47408 -27.31213 -26.57360 -24.61153 -24.54718 -23.70017 -22.64148 -21.77377 -21.26378 -19.34841 -18.73297 -18.04139 -17.43650 -17.30036 -17.11214 -16.99521 -16.78603 -16.42574 -16.15340 -15.96664 -15.78532 -15.46874 -15.22779 -15.10284 -14.98652 -14.64019 -14.36529 -14.23152 -13.83775 -13.31556 -13.06271 -13.01010 -12.97939 -12.83097 -12.78245 -12.70961 -12.59499 -12.34507 -12.17267 -12.14335 -12.04690 -11.96487 -11.88373 -11.74295 -11.69486 -11.10297 -10.99564 -10.72291 -10.59525 -10.56096 -10.27596 -10.03026 -8.68095 -7.91071 -5.34365 1.37397 1.42493 1.49842 1.75571 2.20843 2.46949 2.92547 3.03771 3.25769 3.61546 3.72008 3.75808 3.91322 3.93633 3.99545 4.16223 4.19080 4.21249 4.30987 4.34052 4.39582 4.41174 4.49433 4.51988 4.54960 4.59628 4.60139 4.62233 4.71476 4.77208 4.83346 4.86339 4.87466 4.92549 4.95819 4.99662 5.12446 5.12843 5.22811 5.25913 5.28461 5.36960 5.45429 5.51825 5.57156 5.60433 5.79785 6.28051 6.33339 6.34766 6.70597 7.11077 7.43576 7.84296 8.32435 9.13491 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.008026 B = 0.003813 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3487.998086 B = 7342.387428 C = 9956.692409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.427 6.427 3 C 0.066 3.934 4 C -0.104 4.104 5 C -0.121 4.121 6 C 0.499 3.501 7 O -0.593 6.593 8 N -0.711 5.711 9 C 0.131 3.869 10 H 0.056 0.944 11 C 0.181 3.819 12 N -0.601 5.601 13 C -0.257 4.257 14 H 0.063 0.937 15 C -0.046 4.046 16 N -0.928 5.928 17 Si 0.954 3.046 18 H -0.279 1.279 19 H -0.273 1.273 20 H -0.299 1.299 21 C 0.155 3.845 22 C -0.065 4.065 23 C -0.133 4.133 24 C 0.069 3.931 25 O -0.398 6.398 26 C 0.059 3.941 27 C -0.134 4.134 28 C -0.098 4.098 29 H 0.051 0.949 30 H 0.090 0.910 31 H 0.056 0.944 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.043 0.957 35 H 0.057 0.943 36 H 0.134 0.866 37 H 0.119 0.881 38 H 0.415 0.585 39 H -0.001 1.001 40 H 0.042 0.958 41 H 0.246 0.754 42 H 0.047 0.953 43 H 0.022 0.978 44 H 0.052 0.948 45 H 0.054 0.946 46 H 0.093 0.907 47 H 0.054 0.946 48 H 0.113 0.887 49 H 0.063 0.937 50 H 0.067 0.933 51 H 0.091 0.909 52 H 0.078 0.922 53 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.935 10.546 13.337 21.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.347 6.347 3 C -0.010 4.010 4 C -0.142 4.142 5 C -0.161 4.161 6 C 0.287 3.713 7 O -0.473 6.473 8 N -0.363 5.363 9 C 0.024 3.976 10 H 0.074 0.926 11 C 0.053 3.947 12 N -0.323 5.323 13 C -0.387 4.387 14 H 0.081 0.919 15 C -0.242 4.242 16 N -0.574 5.574 17 Si 0.782 3.218 18 H -0.205 1.205 19 H -0.198 1.198 20 H -0.226 1.226 21 C 0.029 3.971 22 C -0.067 4.067 23 C -0.171 4.171 24 C -0.008 4.008 25 O -0.317 6.317 26 C -0.017 4.017 27 C -0.173 4.173 28 C -0.136 4.136 29 H 0.070 0.930 30 H 0.109 0.891 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.062 0.938 35 H 0.076 0.924 36 H 0.152 0.848 37 H 0.137 0.863 38 H 0.252 0.748 39 H 0.017 0.983 40 H 0.060 0.940 41 H 0.055 0.945 42 H 0.066 0.934 43 H 0.039 0.961 44 H 0.071 0.929 45 H 0.073 0.927 46 H 0.111 0.889 47 H 0.073 0.927 48 H 0.131 0.869 49 H 0.082 0.918 50 H 0.085 0.915 51 H 0.109 0.891 52 H 0.096 0.904 53 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -12.389 9.550 13.352 20.566 hybrid contribution 0.078 -0.947 -1.397 1.689 sum -12.311 8.603 11.955 19.196 Atomic orbital electron populations 1.22925 0.79280 1.03663 1.01145 1.87863 1.21765 1.29429 1.95685 1.22574 0.92085 0.84361 1.01995 1.21163 0.94122 0.96559 1.02375 1.21531 0.88341 0.98815 1.07365 1.21468 0.91312 0.83749 0.74733 1.90739 1.76421 1.28907 1.51234 1.45909 1.06334 1.09384 1.74635 1.21485 0.79359 0.98866 0.97880 0.92595 1.20780 0.83212 0.98733 0.91930 1.44093 1.01224 1.22090 1.64931 1.19378 1.00519 1.08813 1.09994 0.91887 1.25649 0.99567 1.02643 0.96337 1.70155 1.27614 1.37704 1.21884 0.85464 0.77238 0.80918 0.78162 1.20528 1.19757 1.22562 1.21014 0.95389 0.89407 0.91248 1.20805 0.94916 0.95490 0.95486 1.22061 1.00864 0.98427 0.95774 1.22534 0.97203 0.87659 0.93358 1.87870 1.72449 1.15521 1.55903 1.22780 1.00213 0.87536 0.91181 1.22129 1.01118 0.97130 0.96887 1.21738 0.94441 0.96148 1.01237 0.93025 0.89119 0.92540 0.90673 0.91666 0.93825 0.92413 0.84778 0.86331 0.74834 0.98325 0.93990 0.94488 0.93445 0.96058 0.92930 0.92678 0.88908 0.92740 0.86941 0.91844 0.91454 0.89091 0.90381 0.89792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 113.37 1.25 1.63 16 2 O -0.43 -10.12 10.70 -148.98 -1.59 -11.72 16 3 C 0.07 1.24 5.94 71.98 0.43 1.67 16 4 C -0.10 -2.64 4.87 30.60 0.15 -2.49 16 5 C -0.12 -2.48 5.70 29.85 0.17 -2.31 16 6 C 0.50 16.42 7.80 87.66 0.68 17.11 16 7 O -0.59 -27.20 15.65 -3.04 -0.05 -27.24 16 8 N -0.71 -20.86 5.08 -442.15 -2.25 -23.11 16 9 C 0.13 4.83 2.27 45.07 0.10 4.93 16 10 H 0.06 2.45 5.72 -2.38 -0.01 2.44 16 11 C 0.18 8.83 4.89 86.36 0.42 9.25 16 12 N -0.60 -30.22 2.52 -700.10 -1.76 -31.98 16 13 C -0.26 -14.62 9.59 84.03 0.81 -13.81 16 14 H 0.06 3.53 7.89 -2.91 -0.02 3.51 16 15 C -0.05 -2.72 4.90 84.86 0.42 -2.31 16 16 N -0.93 -57.44 11.20 21.65 0.24 -57.20 16 17 Si 0.95 48.15 29.59 68.60 2.03 50.18 16 18 H -0.28 -13.52 7.11 99.48 0.71 -12.82 16 19 H -0.27 -13.35 7.11 99.48 0.71 -12.64 16 20 H -0.30 -15.45 7.11 99.48 0.71 -14.75 16 21 C 0.15 6.18 5.15 86.18 0.44 6.62 16 22 C -0.06 -1.98 0.51 -52.26 -0.03 -2.01 16 23 C -0.13 -4.44 4.47 30.66 0.14 -4.30 16 24 C 0.07 1.88 6.57 72.02 0.47 2.35 16 25 O -0.40 -10.38 10.76 -148.98 -1.60 -11.98 16 26 C 0.06 1.18 6.57 72.02 0.47 1.65 16 27 C -0.13 -3.09 4.92 30.66 0.15 -2.94 16 28 C -0.10 -2.73 3.63 30.60 0.11 -2.62 16 29 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 32 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.04 1.41 8.10 -2.39 -0.02 1.39 16 35 H 0.06 1.67 8.10 -2.39 -0.02 1.65 16 36 H 0.13 1.62 8.14 -2.38 -0.02 1.60 16 37 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.41 8.26 8.60 -92.70 -0.80 7.46 16 39 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 40 H 0.04 2.51 6.03 -2.38 -0.01 2.50 16 41 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 42 H 0.05 1.94 7.93 -2.39 -0.02 1.92 16 43 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.05 2.14 5.93 -2.39 -0.01 2.13 16 45 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 46 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 47 H 0.05 1.40 6.64 -2.39 -0.02 1.39 16 48 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 49 H 0.06 1.10 6.58 -2.38 -0.02 1.08 16 50 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 51 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 52 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 53 H 0.08 1.92 5.03 -2.39 -0.01 1.90 16 Total: -1.00 -80.72 402.61 1.30 -79.42 By element: Atomic # 1 Polarization: 21.11 SS G_CDS: 0.09 Total: 21.20 kcal Atomic # 6 Polarization: 6.24 SS G_CDS: 6.19 Total: 12.42 kcal Atomic # 7 Polarization: -108.52 SS G_CDS: -3.77 Total: -112.29 kcal Atomic # 8 Polarization: -47.70 SS G_CDS: -3.25 Total: -50.94 kcal Atomic # 14 Polarization: 48.15 SS G_CDS: 2.03 Total: 50.18 kcal Total: -80.72 1.30 -79.42 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099566988.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.079 kcal (2) G-P(sol) polarization free energy of solvation -80.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.53 seconds