Wall clock time and date at job start Sat Apr 11 2020 06:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42905 * 113.99636 * 2 1 4 4 C 1.53005 * 109.46871 * 180.02562 * 3 2 1 5 5 C 1.50702 * 109.46920 * 300.00003 * 4 3 2 6 6 O 1.21277 * 119.99775 * 239.99934 * 5 4 3 7 7 N 1.34779 * 119.99889 * 60.00420 * 5 4 3 8 8 C 1.46495 * 119.99981 * 179.97438 * 7 5 4 9 9 H 1.09003 * 109.45986 * 324.97791 * 8 7 5 10 10 C 1.53046 * 109.45843 * 84.93150 * 8 7 5 11 11 C 1.53190 * 109.31214 * 181.38656 * 10 8 7 12 12 N 1.46921 * 108.77668 * 305.36466 * 11 10 8 13 13 C 1.36936 * 120.63290 * 233.58885 * 12 11 10 14 14 H 1.08005 * 119.99972 * 27.67887 * 13 12 11 15 15 C 1.38808 * 120.00457 * 207.68274 * 13 12 11 16 16 N 1.31625 * 119.99750 * 17.37563 * 15 13 12 17 17 Si 1.86799 * 120.00522 * 197.37695 * 15 13 12 18 18 H 1.48506 * 109.46689 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47160 * 119.99678 * 17 15 13 20 20 H 1.48497 * 109.47317 * 239.99934 * 17 15 13 21 21 C 1.46928 * 118.73915 * 53.61174 * 12 11 10 22 22 C 1.53035 * 109.46388 * 204.99801 * 8 7 5 23 23 H 1.09005 * 109.49435 * 58.66724 * 22 8 7 24 24 O 1.42897 * 109.49854 * 298.60222 * 22 8 7 25 25 C 1.52994 * 109.47109 * 60.00181 * 4 3 2 26 26 C 1.52999 * 109.47340 * 179.97438 * 25 4 3 27 27 C 1.52995 * 109.46924 * 300.00180 * 26 25 4 28 28 C 1.52997 * 109.47249 * 60.00138 * 27 26 25 29 29 C 1.52995 * 109.46883 * 180.02562 * 4 3 2 30 30 H 1.09001 * 109.46815 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47082 * 299.99725 * 1 2 3 32 32 H 1.09003 * 109.47300 * 59.99768 * 1 2 3 33 33 H 1.08997 * 109.46869 * 60.00392 * 3 2 1 34 34 H 1.09000 * 109.47143 * 300.00091 * 3 2 1 35 35 H 0.96998 * 119.99790 * 359.97438 * 7 5 4 36 36 H 1.09001 * 109.49703 * 301.34002 * 10 8 7 37 37 H 1.08996 * 109.49642 * 61.40539 * 10 8 7 38 38 H 1.08997 * 109.58840 * 65.15633 * 11 10 8 39 39 H 1.09008 * 109.58438 * 185.57477 * 11 10 8 40 40 H 0.96997 * 119.99884 * 180.02562 * 16 15 13 41 41 H 1.08997 * 109.58713 * 186.60748 * 21 12 11 42 42 H 1.08998 * 109.58625 * 66.17749 * 21 12 11 43 43 H 0.96706 * 114.00236 * 180.02562 * 24 22 8 44 44 H 1.08998 * 109.47213 * 299.99890 * 25 4 3 45 45 H 1.09000 * 109.47243 * 59.99765 * 25 4 3 46 46 H 1.09002 * 109.47168 * 179.97438 * 26 25 4 47 47 H 1.09000 * 109.46986 * 59.99801 * 26 25 4 48 48 H 1.08995 * 109.47676 * 299.99632 * 27 26 25 49 49 H 1.09004 * 109.47270 * 179.97438 * 27 26 25 50 50 H 1.09008 * 109.47256 * 179.97438 * 28 27 26 51 51 H 1.09000 * 109.47548 * 59.99836 * 28 27 26 52 52 H 1.09004 * 109.47453 * 300.00024 * 29 4 3 53 53 H 1.09002 * 109.47492 * 60.00147 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 6 3.9806 0.4367 1.2295 6 8 4.7225 0.9691 2.0276 7 7 3.5543 -0.8240 1.4427 8 6 3.9874 -1.5514 2.6382 9 1 5.0123 -1.2716 2.8821 10 6 3.0698 -1.1974 3.8108 11 6 3.5466 -1.9329 5.0672 12 7 3.6228 -3.3704 4.7734 13 6 2.9767 -4.2800 5.5673 14 1 2.0870 -3.9902 6.1067 15 6 3.4651 -5.5745 5.6788 16 7 4.7021 -5.8445 5.3187 17 14 2.3672 -6.9335 6.3399 18 1 1.0323 -6.3738 6.6718 19 1 2.2180 -7.9938 5.3110 20 1 2.9785 -7.5129 7.5629 21 6 4.4059 -3.8135 3.6118 22 6 3.9195 -3.0569 2.3717 23 1 4.5552 -3.3049 1.5217 24 8 2.5705 -3.4298 2.0833 25 6 3.9864 0.4258 -1.2502 26 6 5.5116 0.3055 -1.2512 27 6 6.1334 1.7035 -1.2514 28 6 5.6825 2.4624 -0.0018 29 6 4.1576 2.5825 0.0000 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.6885 1.8464 0.8900 34 1 1.6885 1.8464 -0.8900 35 1 2.9606 -1.2496 0.8045 36 1 3.1007 -0.1218 3.9851 37 1 2.0487 -1.4989 3.5776 38 1 4.5320 -1.5657 5.3538 39 1 2.8405 -1.7629 5.8801 40 1 5.0433 -6.7491 5.3963 41 1 4.2667 -4.8844 3.4643 42 1 5.4614 -3.5997 3.7797 43 1 2.4528 -4.3728 1.9042 44 1 3.5431 -0.5700 -1.2502 45 1 3.6644 0.9669 -2.1399 46 1 5.8329 -0.2356 -2.1412 47 1 5.8340 -0.2353 -0.3615 48 1 5.8111 2.2444 -2.1411 49 1 7.2201 1.6179 -1.2517 50 1 6.1258 3.4583 -0.0018 51 1 6.0049 1.9216 0.8879 52 1 3.8357 3.1240 -0.8895 53 1 3.8364 3.1229 0.8904 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099867230.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:51 Heat of formation + Delta-G solvation = -146.708765 kcal Electronic energy + Delta-G solvation = -33033.186565 eV Core-core repulsion = 28903.862537 eV Total energy + Delta-G solvation = -4129.324028 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = -0.15 seconds Orbital eigenvalues (eV) -41.91822 -40.01307 -38.63387 -37.85021 -36.48080 -35.63708 -33.97891 -33.08361 -31.72096 -30.96980 -30.58510 -27.96580 -27.06838 -26.04370 -24.59139 -23.82606 -23.53576 -22.90125 -21.61031 -21.09634 -20.13639 -19.06580 -17.68411 -17.47809 -17.19256 -17.11541 -16.95245 -16.60405 -16.44741 -15.77507 -15.60107 -15.50869 -15.33174 -15.17117 -14.92078 -14.72751 -14.52423 -14.30603 -13.79161 -13.65656 -13.48814 -13.15099 -13.07949 -12.99085 -12.92192 -12.76902 -12.70328 -12.63110 -12.36722 -12.25801 -12.13609 -12.02209 -11.94046 -11.81036 -11.57846 -11.38483 -11.06928 -10.99417 -10.76474 -10.60194 -10.59100 -10.35940 -9.81215 -8.68614 -7.87719 -5.31873 1.46867 1.49679 1.60349 1.74351 2.29494 2.51678 2.76715 3.24925 3.41320 3.59945 3.65751 3.71217 3.85531 3.88227 4.02287 4.06943 4.21472 4.28137 4.35051 4.37959 4.40457 4.49556 4.52533 4.58574 4.59300 4.60938 4.64830 4.67565 4.76544 4.77745 4.87718 4.93398 4.95400 4.96712 5.05003 5.07879 5.14575 5.17380 5.26178 5.31169 5.40187 5.41321 5.42727 5.54007 5.59031 5.64749 5.76529 6.21207 6.36505 6.79444 6.92270 7.14153 7.44656 7.81716 8.35573 9.18930 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.017573 B = 0.003290 C = 0.003084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.961814 B = 8508.917710 C = 9078.069468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.405 6.405 3 C 0.073 3.927 4 C -0.069 4.069 5 C 0.520 3.480 6 O -0.581 6.581 7 N -0.698 5.698 8 C 0.169 3.831 9 H 0.066 0.934 10 C -0.113 4.113 11 C 0.145 3.855 12 N -0.596 5.596 13 C -0.255 4.255 14 H 0.061 0.939 15 C -0.046 4.046 16 N -0.936 5.936 17 Si 0.968 3.032 18 H -0.271 1.271 19 H -0.285 1.285 20 H -0.296 1.296 21 C 0.152 3.848 22 C 0.093 3.907 23 H 0.062 0.938 24 O -0.558 6.558 25 C -0.096 4.096 26 C -0.125 4.125 27 C -0.113 4.113 28 C -0.134 4.134 29 C -0.087 4.087 30 H 0.088 0.912 31 H 0.037 0.963 32 H 0.062 0.938 33 H 0.044 0.956 34 H 0.092 0.908 35 H 0.415 0.585 36 H 0.052 0.948 37 H 0.061 0.939 38 H 0.009 0.991 39 H 0.055 0.945 40 H 0.251 0.749 41 H 0.073 0.927 42 H 0.001 0.999 43 H 0.384 0.616 44 H 0.068 0.932 45 H 0.099 0.901 46 H 0.079 0.921 47 H 0.030 0.970 48 H 0.083 0.917 49 H 0.058 0.942 50 H 0.069 0.931 51 H 0.056 0.944 52 H 0.099 0.901 53 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.255 15.177 -19.492 25.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.325 6.325 3 C -0.004 4.004 4 C -0.073 4.073 5 C 0.308 3.692 6 O -0.462 6.462 7 N -0.350 5.350 8 C 0.064 3.936 9 H 0.084 0.916 10 C -0.154 4.154 11 C 0.019 3.981 12 N -0.319 5.319 13 C -0.385 4.385 14 H 0.079 0.921 15 C -0.241 4.241 16 N -0.582 5.582 17 Si 0.797 3.203 18 H -0.195 1.195 19 H -0.211 1.211 20 H -0.223 1.223 21 C 0.025 3.975 22 C 0.032 3.968 23 H 0.080 0.920 24 O -0.364 6.364 25 C -0.134 4.134 26 C -0.163 4.163 27 C -0.151 4.151 28 C -0.171 4.171 29 C -0.125 4.125 30 H 0.107 0.893 31 H 0.056 0.944 32 H 0.081 0.919 33 H 0.063 0.937 34 H 0.110 0.890 35 H 0.254 0.746 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.027 0.973 39 H 0.074 0.926 40 H 0.060 0.940 41 H 0.091 0.909 42 H 0.019 0.981 43 H 0.232 0.768 44 H 0.087 0.913 45 H 0.118 0.882 46 H 0.098 0.902 47 H 0.049 0.951 48 H 0.101 0.899 49 H 0.076 0.924 50 H 0.087 0.913 51 H 0.075 0.925 52 H 0.117 0.883 53 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.676 15.861 -18.819 25.052 hybrid contribution -0.368 -1.603 0.830 1.842 sum -5.044 14.258 -17.989 23.502 Atomic orbital electron populations 1.22831 0.79337 1.03503 1.00632 1.87731 1.21393 1.27814 1.95516 1.22564 0.90499 0.85334 1.01982 1.20989 0.95212 0.97464 0.93598 1.20973 0.79224 0.81599 0.87447 1.90600 1.38251 1.68426 1.48921 1.46134 1.49875 1.14442 1.24508 1.20612 0.97563 0.89666 0.85795 0.91591 1.22007 0.99718 0.98331 0.95302 1.20964 0.97308 0.84414 0.95414 1.44077 1.58739 1.00914 1.28193 1.19464 1.04274 0.92070 1.22664 0.92086 1.25701 0.96466 1.00848 1.01123 1.70182 1.14551 1.19677 1.53796 0.85201 0.78651 0.79303 0.77195 1.19541 1.21137 1.22308 1.21301 0.91995 0.98709 0.85445 1.22463 0.84331 0.93385 0.96670 0.92043 1.86354 1.26744 1.30626 1.92664 1.21526 0.95461 1.00629 0.95775 1.21593 0.95578 0.97780 1.01316 1.21518 0.99928 0.95313 0.98297 1.21721 0.95499 1.00852 0.99074 1.21301 0.95633 0.92671 1.02880 0.89301 0.94447 0.91931 0.93721 0.89039 0.74574 0.92940 0.92001 0.97308 0.92647 0.94009 0.90850 0.98063 0.76755 0.91320 0.88216 0.90192 0.95106 0.89851 0.92356 0.91258 0.92537 0.88265 0.92592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.01 113.37 1.25 1.77 16 2 O -0.41 -8.29 7.53 -148.98 -1.12 -9.41 16 3 C 0.07 1.30 4.79 71.98 0.35 1.65 16 4 C -0.07 -1.46 0.52 -52.93 -0.03 -1.48 16 5 C 0.52 15.84 4.93 87.66 0.43 16.27 16 6 O -0.58 -21.89 13.32 -3.02 -0.04 -21.93 16 7 N -0.70 -21.95 4.59 -442.41 -2.03 -23.98 16 8 C 0.17 6.37 2.20 45.02 0.10 6.46 16 9 H 0.07 2.77 7.58 -2.39 -0.02 2.75 16 10 C -0.11 -4.54 5.51 30.67 0.17 -4.37 16 11 C 0.15 6.65 6.52 86.36 0.56 7.22 16 12 N -0.60 -30.58 2.94 -699.11 -2.05 -32.63 16 13 C -0.25 -14.11 9.59 84.03 0.81 -13.31 16 14 H 0.06 3.37 7.89 -2.91 -0.02 3.35 16 15 C -0.05 -2.55 4.91 84.86 0.42 -2.14 16 16 N -0.94 -54.42 11.19 21.65 0.24 -54.18 16 17 Si 0.97 44.50 29.59 68.60 2.03 46.53 16 18 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 19 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 20 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 21 C 0.15 7.27 4.95 86.36 0.43 7.70 16 22 C 0.09 3.51 3.38 30.67 0.10 3.61 16 23 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 24 O -0.56 -19.96 12.09 -148.98 -1.80 -21.76 16 25 C -0.10 -1.68 4.49 30.59 0.14 -1.55 16 26 C -0.13 -2.43 5.70 30.59 0.17 -2.26 16 27 C -0.11 -1.98 5.92 30.59 0.18 -1.80 16 28 C -0.13 -2.87 5.63 30.58 0.17 -2.70 16 29 C -0.09 -1.65 4.37 30.58 0.13 -1.51 16 30 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.42 12.23 5.63 -92.71 -0.52 11.71 16 36 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.06 2.57 7.61 -2.39 -0.02 2.55 16 38 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 39 H 0.05 2.48 7.93 -2.38 -0.02 2.47 16 40 H 0.25 14.08 8.31 -92.71 -0.77 13.30 16 41 H 0.07 3.82 6.04 -2.39 -0.01 3.80 16 42 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 43 H 0.38 11.86 9.08 -74.05 -0.67 11.19 16 44 H 0.07 1.31 7.10 -2.39 -0.02 1.30 16 45 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 46 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 47 H 0.03 0.80 7.22 -2.39 -0.02 0.78 16 48 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 49 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 50 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 51 H 0.06 1.68 5.51 -2.39 -0.01 1.67 16 52 H 0.10 1.22 8.14 -2.38 -0.02 1.20 16 53 H 0.06 1.20 8.10 -2.39 -0.02 1.19 16 Total: -1.00 -68.43 397.12 0.31 -68.12 By element: Atomic # 1 Polarization: 35.96 SS G_CDS: -0.30 Total: 35.66 kcal Atomic # 6 Polarization: 8.19 SS G_CDS: 5.38 Total: 13.57 kcal Atomic # 7 Polarization: -106.95 SS G_CDS: -3.84 Total: -110.79 kcal Atomic # 8 Polarization: -50.14 SS G_CDS: -2.96 Total: -53.10 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -68.43 0.31 -68.12 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099867230.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.585 kcal (2) G-P(sol) polarization free energy of solvation -68.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.15 seconds