Wall clock time and date at job start Sat Apr 11 2020 06:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42898 * 114.00095 * 2 1 4 4 C 1.53002 * 109.47365 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47104 * 179.97438 * 4 3 2 6 6 C 1.50701 * 109.47106 * 179.97438 * 5 4 3 7 7 O 1.21282 * 119.99783 * 0.02562 * 6 5 4 8 8 N 1.34776 * 119.99964 * 180.02562 * 6 5 4 9 9 C 1.47155 * 120.98974 * 0.02562 * 8 6 5 10 10 C 1.53292 * 108.38071 * 230.60338 * 9 8 6 11 11 O 1.42969 * 109.23581 * 307.66979 * 10 9 8 12 12 C 1.42892 * 114.19470 * 62.49154 * 11 10 9 13 13 C 1.52960 * 109.57672 * 177.70809 * 12 11 10 14 14 C 1.52997 * 109.51340 * 299.56226 * 13 12 11 15 15 C 1.53000 * 109.47060 * 300.07539 * 14 13 12 16 16 N 1.46507 * 109.47099 * 180.02562 * 15 14 13 17 17 C 1.36943 * 119.99574 * 155.00276 * 16 15 14 18 18 H 1.07995 * 119.99945 * 359.97438 * 17 16 15 19 19 C 1.38815 * 119.99331 * 179.97438 * 17 16 15 20 20 N 1.31609 * 120.00138 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99530 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47317 * 60.00089 * 21 19 17 23 23 H 1.48499 * 109.47245 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47501 * 300.00188 * 21 19 17 25 25 C 1.53004 * 109.45117 * 60.05665 * 15 14 13 26 26 C 1.52946 * 109.58143 * 57.46052 * 12 11 10 27 27 C 1.47158 * 120.98550 * 180.02562 * 8 6 5 28 28 H 1.08993 * 109.47308 * 60.00324 * 1 2 3 29 29 H 1.09001 * 109.46722 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46952 * 300.00004 * 1 2 3 31 31 H 1.08992 * 109.47109 * 59.99872 * 3 2 1 32 32 H 1.09002 * 109.46829 * 300.00020 * 3 2 1 33 33 H 1.09003 * 109.46529 * 59.99684 * 4 3 2 34 34 H 1.08990 * 109.46776 * 300.00050 * 4 3 2 35 35 H 1.09000 * 109.46724 * 60.00299 * 5 4 3 36 36 H 1.08994 * 109.47333 * 300.00295 * 5 4 3 37 37 H 1.09001 * 109.67603 * 110.88138 * 9 8 6 38 38 H 1.08993 * 109.71282 * 350.34569 * 9 8 6 39 39 H 1.08995 * 109.50854 * 187.74250 * 10 9 8 40 40 H 1.09003 * 109.55201 * 67.62415 * 10 9 8 41 41 H 1.09000 * 109.46397 * 179.54940 * 13 12 11 42 42 H 1.09000 * 109.46093 * 59.57623 * 13 12 11 43 43 H 1.09002 * 109.47153 * 180.02562 * 14 13 12 44 44 H 1.09001 * 109.46832 * 60.07410 * 14 13 12 45 45 H 1.08995 * 109.47704 * 300.06073 * 15 14 13 46 46 H 0.96996 * 120.00207 * 334.99250 * 16 15 14 47 47 H 0.97005 * 120.00190 * 179.97438 * 20 19 17 48 48 H 1.09000 * 109.46878 * 59.93585 * 25 15 14 49 49 H 1.08989 * 109.47330 * 179.97438 * 25 15 14 50 50 H 1.09010 * 109.46276 * 300.41250 * 26 12 11 51 51 H 1.09003 * 109.46732 * 180.44203 * 26 12 11 52 52 H 1.09001 * 109.68114 * 9.76268 * 27 8 6 53 53 H 1.09000 * 109.67889 * 249.20775 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 6 4.1578 2.5824 -0.0013 6 6 5.6601 2.4634 -0.0013 7 8 6.1817 1.3685 -0.0013 8 7 6.4240 3.5738 -0.0013 9 6 5.8141 4.9130 -0.0007 10 6 6.4537 5.7358 -1.1249 11 8 7.8765 5.6867 -0.9937 12 6 8.4318 4.3767 -1.1247 13 6 9.9561 4.4537 -1.0244 14 6 10.4981 5.3402 -2.1475 15 6 10.1045 4.7458 -3.5012 16 7 10.6240 5.5943 -4.5767 17 6 10.8627 5.0606 -5.8151 18 1 10.6684 4.0143 -5.9987 19 6 11.3544 5.8647 -6.8342 20 7 11.5906 7.1399 -6.6104 21 14 11.6807 5.1367 -8.5232 22 1 10.4175 4.5868 -9.0778 23 1 12.1980 6.1953 -9.4271 24 1 12.6853 4.0491 -8.4079 25 6 8.5795 4.6724 -3.6015 26 6 8.0369 3.7856 -2.4790 27 6 7.8928 3.4829 -0.0019 28 1 -0.3633 0.5137 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6887 1.8463 0.8899 32 1 1.6886 1.8463 -0.8900 33 1 3.8567 0.6438 -0.8909 34 1 3.8574 0.6436 0.8890 35 1 3.8365 3.1234 0.8887 36 1 3.8357 3.1231 -0.8912 37 1 5.9953 5.3984 0.9583 38 1 4.7412 4.8284 -0.1724 39 1 6.1172 6.7702 -1.0555 40 1 6.1626 5.3224 -2.0906 41 1 10.3773 3.4526 -1.1165 42 1 10.2356 4.8779 -0.0599 43 1 11.5844 5.3943 -2.0756 44 1 10.0782 6.3417 -2.0545 45 1 10.5234 3.7438 -3.5938 46 1 10.7986 6.5340 -4.4117 47 1 11.9346 7.7018 -7.3225 48 1 8.1606 5.6743 -3.5077 49 1 8.2987 4.2494 -4.5659 50 1 6.9503 3.7340 -2.5499 51 1 8.4549 2.7834 -2.5737 52 1 8.1966 2.4507 -0.1763 53 1 8.2820 3.8236 0.9576 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105460699.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:42 Heat of formation + Delta-G solvation = -146.349518 kcal Electronic energy + Delta-G solvation = -31043.732929 eV Core-core repulsion = 26914.424479 eV Total energy + Delta-G solvation = -4129.308450 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 2.65 seconds Orbital eigenvalues (eV) -41.91009 -40.25472 -38.85050 -38.06832 -35.88820 -35.35698 -34.69501 -33.28321 -31.83586 -31.13784 -29.61991 -28.70362 -27.18767 -26.13611 -25.02236 -24.48516 -23.51189 -22.80099 -21.63829 -20.59685 -19.89947 -19.13701 -18.36762 -17.49075 -17.42900 -17.19041 -16.98029 -16.66302 -16.49472 -16.18462 -16.00647 -15.69231 -15.51829 -15.26778 -15.07205 -14.70343 -14.58742 -14.26704 -13.99518 -13.81277 -13.34516 -13.27713 -13.13472 -13.07493 -12.99921 -12.78591 -12.72191 -12.63875 -12.53297 -12.23434 -12.13794 -12.01473 -11.96308 -11.90471 -11.80686 -11.66435 -11.36013 -11.25456 -10.95189 -10.77424 -10.66575 -10.60110 -9.50108 -8.99134 -7.93626 -5.21618 1.45161 1.48030 1.54183 1.57890 1.84363 2.55485 2.78780 2.84713 3.38154 3.46747 3.58760 3.72778 3.80531 3.93616 3.97055 3.99399 4.12679 4.19885 4.25731 4.28303 4.32563 4.37608 4.45378 4.49165 4.51598 4.54158 4.57654 4.59033 4.59702 4.61092 4.68002 4.74111 4.78145 4.87150 4.87265 4.94576 5.00945 5.04477 5.10231 5.11215 5.21486 5.26744 5.28519 5.38880 5.48491 5.57217 5.64535 6.26030 6.28561 6.31181 6.34880 7.11276 7.34243 8.12041 8.35740 9.29629 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014459 B = 0.002300 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.106291 B =12173.587532 C =13262.634053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.426 6.426 3 C 0.062 3.938 4 C -0.102 4.102 5 C -0.127 4.127 6 C 0.509 3.491 7 O -0.586 6.586 8 N -0.614 5.614 9 C 0.075 3.925 10 C 0.033 3.967 11 O -0.376 6.376 12 C 0.119 3.881 13 C -0.093 4.093 14 C -0.107 4.107 15 C 0.173 3.827 16 N -0.737 5.737 17 C -0.238 4.238 18 H 0.070 0.930 19 C -0.077 4.077 20 N -0.969 5.969 21 Si 0.970 3.030 22 H -0.280 1.280 23 H -0.294 1.294 24 H -0.279 1.279 25 C -0.113 4.113 26 C -0.125 4.125 27 C 0.094 3.906 28 H 0.051 0.949 29 H 0.090 0.910 30 H 0.054 0.946 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.052 0.948 34 H 0.059 0.941 35 H 0.129 0.871 36 H 0.120 0.880 37 H 0.095 0.905 38 H 0.127 0.873 39 H 0.126 0.874 40 H 0.049 0.951 41 H 0.084 0.916 42 H 0.089 0.911 43 H 0.056 0.944 44 H 0.058 0.942 45 H 0.034 0.966 46 H 0.372 0.628 47 H 0.250 0.750 48 H 0.050 0.950 49 H 0.032 0.968 50 H 0.063 0.937 51 H 0.062 0.938 52 H 0.084 0.916 53 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.406 -5.977 20.471 30.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.346 6.346 3 C -0.014 4.014 4 C -0.140 4.140 5 C -0.167 4.167 6 C 0.300 3.700 7 O -0.466 6.466 8 N -0.347 5.347 9 C -0.047 4.047 10 C -0.045 4.045 11 O -0.295 6.295 12 C 0.078 3.922 13 C -0.132 4.132 14 C -0.145 4.145 15 C 0.065 3.935 16 N -0.376 5.376 17 C -0.370 4.370 18 H 0.088 0.912 19 C -0.269 4.269 20 N -0.619 5.619 21 Si 0.799 3.201 22 H -0.206 1.206 23 H -0.220 1.220 24 H -0.205 1.205 25 C -0.153 4.153 26 C -0.164 4.164 27 C -0.029 4.029 28 H 0.069 0.931 29 H 0.109 0.891 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.147 0.853 36 H 0.139 0.861 37 H 0.113 0.887 38 H 0.145 0.855 39 H 0.143 0.857 40 H 0.067 0.933 41 H 0.103 0.897 42 H 0.108 0.892 43 H 0.075 0.925 44 H 0.077 0.923 45 H 0.052 0.948 46 H 0.204 0.796 47 H 0.059 0.941 48 H 0.068 0.932 49 H 0.051 0.949 50 H 0.082 0.918 51 H 0.081 0.919 52 H 0.103 0.897 53 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -21.896 -6.681 20.367 30.641 hybrid contribution 0.274 0.064 -1.439 1.467 sum -21.621 -6.616 18.928 29.488 Atomic orbital electron populations 1.22915 0.79357 1.03662 1.01076 1.87851 1.21636 1.29419 1.95679 1.22605 0.92555 0.84380 1.01879 1.21158 0.93719 0.96346 1.02796 1.21601 0.88811 0.99048 1.07195 1.21306 0.91029 0.83031 0.74657 1.90705 1.76034 1.28038 1.51789 1.48256 1.06360 1.07062 1.73001 1.22707 1.00069 0.81148 1.00748 1.23212 0.80985 1.02629 0.97625 1.88011 1.21143 1.27552 1.92764 1.21672 0.94359 0.83303 0.92820 1.21446 0.91348 1.01031 0.99332 1.21545 0.99972 0.99555 0.93461 1.20445 0.91912 0.93373 0.87808 1.42622 1.77483 1.09342 1.08171 1.19548 1.34366 0.94199 0.88918 0.91198 1.25528 1.03206 0.96246 1.01926 1.69808 1.52959 1.05777 1.33394 0.85258 0.77969 0.76917 0.79912 1.20619 1.22013 1.20505 1.21896 0.98017 0.98905 0.96526 1.21945 1.00558 0.99055 0.94798 1.22207 0.80305 1.01206 0.99209 0.93068 0.89124 0.92704 0.91091 0.91702 0.92934 0.92253 0.85256 0.86149 0.88686 0.85478 0.85660 0.93266 0.89719 0.89199 0.92532 0.92300 0.94801 0.79650 0.94075 0.93153 0.94912 0.91793 0.91939 0.89742 0.89372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 113.37 1.25 1.51 16 2 O -0.43 -7.51 10.70 -148.98 -1.59 -9.10 16 3 C 0.06 0.75 5.94 71.98 0.43 1.18 16 4 C -0.10 -1.65 4.87 30.59 0.15 -1.50 16 5 C -0.13 -1.42 4.07 29.85 0.12 -1.30 16 6 C 0.51 10.40 7.71 87.66 0.68 11.08 16 7 O -0.59 -17.69 15.45 -3.04 -0.05 -17.74 16 8 N -0.61 -11.03 2.54 -817.32 -2.08 -13.10 16 9 C 0.08 0.82 6.54 86.35 0.56 1.38 16 10 C 0.03 0.54 6.60 72.08 0.48 1.01 16 11 O -0.38 -9.09 8.93 -148.98 -1.33 -10.42 16 12 C 0.12 2.90 0.68 -10.72 -0.01 2.90 16 13 C -0.09 -2.38 4.94 30.58 0.15 -2.22 16 14 C -0.11 -3.61 5.25 30.59 0.16 -3.45 16 15 C 0.17 7.09 2.77 44.99 0.12 7.22 16 16 N -0.74 -38.51 5.12 -322.92 -1.65 -40.16 16 17 C -0.24 -13.65 9.93 84.03 0.83 -12.82 16 18 H 0.07 3.89 7.83 -2.91 -0.02 3.87 16 19 C -0.08 -4.52 5.50 84.86 0.47 -4.06 16 20 N -0.97 -60.36 13.06 21.65 0.28 -60.08 16 21 Si 0.97 47.25 29.55 68.60 2.03 49.28 16 22 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 23 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 24 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 25 C -0.11 -4.20 5.36 30.59 0.16 -4.03 16 26 C -0.13 -3.62 4.19 30.58 0.13 -3.49 16 27 C 0.09 2.01 5.30 86.36 0.46 2.47 16 28 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.05 1.12 8.10 -2.39 -0.02 1.10 16 34 H 0.06 1.18 8.10 -2.39 -0.02 1.16 16 35 H 0.13 0.60 8.01 -2.39 -0.02 0.58 16 36 H 0.12 0.81 7.66 -2.39 -0.02 0.79 16 37 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.13 0.50 6.06 -2.39 -0.01 0.48 16 39 H 0.13 1.53 8.14 -2.39 -0.02 1.52 16 40 H 0.05 0.94 6.26 -2.39 -0.01 0.93 16 41 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 43 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 44 H 0.06 2.10 7.70 -2.39 -0.02 2.08 16 45 H 0.03 1.45 8.08 -2.39 -0.02 1.43 16 46 H 0.37 20.84 7.80 -92.71 -0.72 20.12 16 47 H 0.25 15.15 8.31 -92.70 -0.77 14.38 16 48 H 0.05 1.94 7.70 -2.39 -0.02 1.92 16 49 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 50 H 0.06 1.73 6.11 -2.38 -0.01 1.72 16 51 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 52 H 0.08 2.11 7.07 -2.39 -0.02 2.10 16 53 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -77.59 407.98 1.91 -75.69 By element: Atomic # 1 Polarization: 29.60 SS G_CDS: 0.16 Total: 29.76 kcal Atomic # 6 Polarization: -10.27 SS G_CDS: 6.14 Total: -4.13 kcal Atomic # 7 Polarization: -109.89 SS G_CDS: -3.45 Total: -113.34 kcal Atomic # 8 Polarization: -34.29 SS G_CDS: -2.97 Total: -37.26 kcal Atomic # 14 Polarization: 47.25 SS G_CDS: 2.03 Total: 49.28 kcal Total: -77.59 1.91 -75.69 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105460699.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.663 kcal (2) G-P(sol) polarization free energy of solvation -77.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.65 seconds