Wall clock time and date at job start Sat Apr 11 2020 06:13:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 114.00140 * 2 1 4 4 C 1.52997 * 109.47109 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47271 * 180.02562 * 4 3 2 6 6 O 1.42898 * 109.47066 * 180.02562 * 5 4 3 7 7 C 1.42898 * 113.99927 * 179.97438 * 6 5 4 8 8 C 1.50699 * 109.47419 * 179.97438 * 7 6 5 9 9 O 1.21280 * 119.99859 * 359.97438 * 8 7 6 10 10 N 1.34774 * 120.00312 * 179.97438 * 8 7 6 11 11 C 1.48119 * 127.84156 * 0.02562 * 10 8 7 12 12 C 1.54331 * 104.69230 * 140.22054 * 11 10 8 13 13 H 1.09001 * 112.59821 * 262.02861 * 12 11 10 14 14 C 1.54169 * 109.65500 * 137.80055 * 12 11 10 15 15 C 1.54843 * 104.32556 * 223.42034 * 14 12 11 16 16 C 1.54840 * 102.73500 * 38.18879 * 15 14 12 17 17 C 1.54166 * 104.32903 * 321.81229 * 16 15 14 18 18 C 1.53005 * 111.81953 * 261.25095 * 17 16 15 19 19 N 1.46505 * 109.46904 * 298.97995 * 18 17 16 20 20 C 1.36931 * 119.99788 * 180.02562 * 19 18 17 21 21 H 1.08002 * 120.00438 * 0.02562 * 20 19 18 22 22 C 1.38817 * 119.99680 * 179.72358 * 20 19 18 23 23 N 1.31614 * 119.99888 * 0.27479 * 22 20 19 24 24 Si 1.86803 * 119.99862 * 180.27671 * 22 20 19 25 25 H 1.48496 * 109.47141 * 59.99751 * 24 22 20 26 26 H 1.48490 * 109.47071 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.46993 * 300.00028 * 24 22 20 28 28 C 1.50619 * 127.74573 * 180.30233 * 10 8 7 29 29 H 1.08996 * 109.47207 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46801 * 300.00337 * 1 2 3 31 31 H 1.09000 * 109.47070 * 59.99358 * 1 2 3 32 32 H 1.08998 * 109.46826 * 60.00401 * 3 2 1 33 33 H 1.09001 * 109.47520 * 300.00333 * 3 2 1 34 34 H 1.09000 * 109.47337 * 60.00063 * 4 3 2 35 35 H 1.09000 * 109.47507 * 300.00081 * 4 3 2 36 36 H 1.09000 * 109.47159 * 59.99623 * 5 4 3 37 37 H 1.09005 * 109.46557 * 299.99796 * 5 4 3 38 38 H 1.09001 * 109.47567 * 59.99847 * 7 6 5 39 39 H 1.09005 * 109.47396 * 299.99941 * 7 6 5 40 40 H 1.09005 * 110.39470 * 21.42104 * 11 10 8 41 41 H 1.08996 * 110.39635 * 259.02325 * 11 10 8 42 42 H 1.08999 * 110.46159 * 104.70976 * 14 12 11 43 43 H 1.08999 * 110.56878 * 342.18935 * 14 12 11 44 44 H 1.08994 * 110.75931 * 279.87537 * 15 14 12 45 45 H 1.09005 * 110.91542 * 156.56829 * 15 14 12 46 46 H 1.08998 * 110.46422 * 203.09931 * 16 15 14 47 47 H 1.08999 * 110.46501 * 80.52011 * 16 15 14 48 48 H 1.09003 * 109.46946 * 178.98754 * 18 17 16 49 49 H 1.08993 * 109.47679 * 58.98297 * 18 17 16 50 50 H 0.97000 * 119.99792 * 0.02562 * 19 18 17 51 51 H 0.97005 * 119.99715 * 179.97438 * 23 22 20 52 52 H 1.09004 * 110.78240 * 101.42763 * 28 10 8 53 53 H 1.09001 * 111.15169 * 338.24417 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1579 2.5823 0.0000 6 8 5.5824 2.4694 -0.0012 7 6 6.2649 3.7248 -0.0013 8 6 7.7531 3.4876 -0.0020 9 8 8.1866 2.3549 -0.0019 10 7 8.6024 4.5341 -0.0027 11 6 8.2667 5.9767 -0.0024 12 6 9.2962 6.6180 0.9519 13 1 8.8981 6.7728 1.9547 14 6 9.8092 7.9406 0.3483 15 6 11.3381 7.9050 0.5909 16 6 11.6876 6.4163 0.3477 17 6 10.4992 5.6417 0.9514 18 6 10.8135 5.1220 2.3557 19 7 11.9517 4.2017 2.2924 20 6 12.4159 3.6073 3.4353 21 1 11.9429 3.8166 4.3834 22 6 13.4907 2.7308 3.3744 23 7 14.0668 2.4753 2.2190 24 14 14.1191 1.9140 4.9324 25 1 13.0317 1.1065 5.5412 26 1 15.2657 1.0308 4.6003 27 1 14.5599 2.9559 5.8943 28 6 10.1082 4.4995 -0.0097 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.6887 1.8463 0.8900 33 1 1.6887 1.8464 -0.8899 34 1 3.8568 0.6438 -0.8908 35 1 3.8575 0.6435 0.8891 36 1 3.8365 3.1227 0.8904 37 1 3.8359 3.1237 -0.8896 38 1 5.9878 4.2892 0.8891 39 1 5.9863 4.2898 -0.8909 40 1 7.2546 6.1312 0.3716 41 1 8.3693 6.3908 -1.0055 42 1 9.3618 8.7922 0.8610 43 1 9.5936 7.9835 -0.7192 44 1 11.5737 8.1948 1.6148 45 1 11.8600 8.5454 -0.1202 46 1 12.6133 6.1536 0.8598 47 1 11.7713 6.2139 -0.7201 48 1 9.9440 4.5977 2.7522 49 1 11.0602 5.9606 3.0068 50 1 12.3763 4.0134 1.4408 51 1 14.8181 1.8631 2.1765 52 1 10.4949 4.6955 -1.0098 53 1 10.4814 3.5454 0.3625 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112559607.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:22 Heat of formation + Delta-G solvation = -139.147090 kcal Electronic energy + Delta-G solvation = -30198.385882 eV Core-core repulsion = 26069.389752 eV Total energy + Delta-G solvation = -4128.996129 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.57623 -40.06677 -39.09908 -38.34727 -36.47038 -35.62762 -33.84381 -33.45944 -31.20205 -30.80241 -29.18287 -27.84179 -26.92432 -26.46377 -25.54109 -25.04872 -23.52454 -22.65259 -21.36786 -20.28031 -19.81162 -19.15393 -18.33673 -17.71756 -17.44599 -17.27037 -17.03670 -16.70431 -16.60853 -16.40005 -16.17697 -15.64006 -15.52511 -15.21139 -15.15708 -14.78387 -14.47743 -14.38786 -14.14131 -13.95232 -13.40483 -13.20184 -13.09969 -13.09086 -12.87042 -12.74210 -12.65875 -12.45144 -12.25589 -12.15776 -12.09618 -11.97005 -11.84227 -11.76948 -11.71765 -11.42297 -11.37606 -11.34485 -10.96721 -10.75597 -10.70518 -10.63789 -9.76714 -9.01244 -7.97822 -5.25864 1.41332 1.45980 1.51584 1.54879 1.59912 2.52502 2.52609 3.17555 3.34467 3.36443 3.48520 3.69723 3.72903 3.90834 4.07753 4.14928 4.17077 4.19682 4.22743 4.24435 4.28981 4.35060 4.43340 4.43840 4.46226 4.48755 4.51363 4.56565 4.57036 4.57456 4.72508 4.76101 4.85934 4.88953 4.90837 4.98369 5.04373 5.06395 5.08252 5.11707 5.23484 5.26791 5.33474 5.41907 5.46832 5.51552 5.60975 6.07553 6.23820 6.24295 6.58287 7.13893 7.30491 8.07262 8.30406 9.25505 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.009539 B = 0.002423 C = 0.002016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2934.669712 B =11551.361506 C =13888.598539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.425 6.425 3 C 0.069 3.931 4 C -0.122 4.122 5 C 0.065 3.935 6 O -0.405 6.405 7 C 0.061 3.939 8 C 0.515 3.485 9 O -0.590 6.590 10 N -0.623 5.623 11 C 0.106 3.894 12 C -0.092 4.092 13 H 0.092 0.908 14 C -0.100 4.100 15 C -0.117 4.117 16 C -0.114 4.114 17 C -0.071 4.071 18 C 0.175 3.825 19 N -0.739 5.739 20 C -0.247 4.247 21 H 0.071 0.929 22 C -0.076 4.076 23 N -0.968 5.968 24 Si 0.974 3.026 25 H -0.284 1.284 26 H -0.293 1.293 27 H -0.272 1.272 28 C 0.117 3.883 29 H 0.092 0.908 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.110 0.890 39 H 0.120 0.880 40 H 0.112 0.888 41 H 0.104 0.896 42 H 0.090 0.910 43 H 0.091 0.909 44 H 0.056 0.944 45 H 0.082 0.918 46 H 0.042 0.958 47 H 0.075 0.925 48 H -0.002 1.002 49 H 0.026 0.974 50 H 0.375 0.625 51 H 0.251 0.749 52 H 0.086 0.914 53 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.158 14.624 -8.996 32.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.345 6.345 3 C -0.007 4.007 4 C -0.160 4.160 5 C -0.011 4.011 6 O -0.325 6.325 7 C -0.017 4.017 8 C 0.304 3.696 9 O -0.470 6.470 10 N -0.358 5.358 11 C -0.014 4.014 12 C -0.112 4.112 13 H 0.110 0.890 14 C -0.138 4.138 15 C -0.155 4.155 16 C -0.152 4.152 17 C -0.072 4.072 18 C 0.049 3.951 19 N -0.382 5.382 20 C -0.379 4.379 21 H 0.089 0.911 22 C -0.269 4.269 23 N -0.618 5.618 24 Si 0.802 3.198 25 H -0.211 1.211 26 H -0.219 1.219 27 H -0.198 1.198 28 C -0.005 4.005 29 H 0.110 0.890 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.093 0.907 37 H 0.099 0.901 38 H 0.127 0.873 39 H 0.137 0.863 40 H 0.130 0.870 41 H 0.122 0.878 42 H 0.108 0.892 43 H 0.109 0.891 44 H 0.075 0.925 45 H 0.101 0.899 46 H 0.060 0.940 47 H 0.093 0.907 48 H 0.015 0.985 49 H 0.043 0.957 50 H 0.207 0.793 51 H 0.060 0.940 52 H 0.104 0.896 53 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -26.839 13.561 -8.817 31.336 hybrid contribution 1.025 -1.132 0.769 1.710 sum -25.814 12.429 -8.048 29.759 Atomic orbital electron populations 1.22936 0.79103 1.03785 1.01184 1.87846 1.21849 1.29105 1.95695 1.22388 0.91734 0.84556 1.02044 1.21366 0.94291 0.97194 1.03171 1.22535 0.78791 0.96990 1.02774 1.87983 1.19918 1.28738 1.95847 1.22253 0.86732 0.87219 1.05542 1.20892 0.89581 0.83363 0.75722 1.90750 1.79806 1.24777 1.51633 1.49681 1.06455 1.07491 1.72201 1.22936 1.00380 0.77075 1.01057 1.22757 0.93383 0.94748 1.00306 0.88962 1.22402 0.94067 0.95330 1.01991 1.22461 0.97186 0.94236 1.01578 1.22432 0.96335 0.96293 1.00153 1.22153 0.96938 0.94653 0.93467 1.20620 0.88407 0.91276 0.94808 1.42528 1.35935 1.52705 1.06993 1.19560 1.10344 1.19342 0.88680 0.91123 1.25581 0.99758 1.01563 0.99962 1.69809 1.26115 1.40663 1.25219 0.85213 0.77248 0.78191 0.79133 1.21052 1.21903 1.19791 1.22921 0.79398 0.98898 0.99257 0.88988 0.92868 0.92666 0.91416 0.91071 0.91845 0.92312 0.90694 0.90108 0.87276 0.86257 0.86954 0.87763 0.89156 0.89079 0.92490 0.89921 0.93956 0.90663 0.98456 0.95653 0.79281 0.94016 0.89574 0.94342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 113.37 1.25 1.53 16 2 O -0.43 -7.98 10.70 -148.98 -1.59 -9.57 16 3 C 0.07 0.96 5.94 71.98 0.43 1.38 16 4 C -0.12 -2.32 5.95 30.59 0.18 -2.14 16 5 C 0.06 1.03 5.94 71.98 0.43 1.46 16 6 O -0.41 -10.85 9.88 -129.94 -1.28 -12.14 16 7 C 0.06 1.27 5.39 71.24 0.38 1.65 16 8 C 0.51 17.21 8.00 87.66 0.70 17.91 16 9 O -0.59 -28.22 16.83 16.01 0.27 -27.96 16 10 N -0.62 -17.76 3.36 -801.65 -2.70 -20.46 16 11 C 0.11 1.67 6.48 86.52 0.56 2.23 16 12 C -0.09 -1.80 3.52 -9.29 -0.03 -1.83 16 13 H 0.09 1.78 7.88 -2.39 -0.02 1.77 16 14 C -0.10 -1.38 6.38 31.62 0.20 -1.18 16 15 C -0.12 -2.37 6.90 31.85 0.22 -2.15 16 16 C -0.11 -3.29 5.68 31.62 0.18 -3.11 16 17 C -0.07 -2.20 0.61 -50.68 -0.03 -2.23 16 18 C 0.18 7.40 5.20 86.38 0.45 7.85 16 19 N -0.74 -39.88 4.59 -343.44 -1.58 -41.45 16 20 C -0.25 -14.77 9.99 84.04 0.84 -13.93 16 21 H 0.07 4.07 7.83 -2.91 -0.02 4.05 16 22 C -0.08 -4.66 5.50 84.86 0.47 -4.19 16 23 N -0.97 -62.48 13.06 21.65 0.28 -62.19 16 24 Si 0.97 49.04 29.55 68.60 2.03 51.06 16 25 H -0.28 -14.07 7.11 99.48 0.71 -13.36 16 26 H -0.29 -14.73 7.11 99.48 0.71 -14.02 16 27 H -0.27 -12.94 7.11 99.48 0.71 -12.23 16 28 C 0.12 4.11 6.08 86.02 0.52 4.63 16 29 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 38 H 0.11 1.56 7.95 -2.39 -0.02 1.54 16 39 H 0.12 1.43 8.14 -2.38 -0.02 1.41 16 40 H 0.11 0.97 7.30 -2.38 -0.02 0.95 16 41 H 0.10 1.11 7.26 -2.39 -0.02 1.10 16 42 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.09 0.89 7.25 -2.39 -0.02 0.88 16 44 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 45 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 46 H 0.04 1.58 7.16 -2.39 -0.02 1.56 16 47 H 0.07 1.97 7.19 -2.39 -0.02 1.95 16 48 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 49 H 0.03 1.05 8.14 -2.39 -0.02 1.04 16 50 H 0.37 21.43 6.60 -92.71 -0.61 20.82 16 51 H 0.25 15.72 8.31 -92.70 -0.77 14.95 16 52 H 0.09 2.68 7.20 -2.38 -0.02 2.66 16 53 H 0.04 1.83 6.98 -2.39 -0.02 1.81 16 Total: -1.00 -89.68 418.91 2.44 -87.24 By element: Atomic # 1 Polarization: 27.31 SS G_CDS: 0.27 Total: 27.58 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: 6.75 Total: 7.90 kcal Atomic # 7 Polarization: -120.12 SS G_CDS: -3.99 Total: -124.11 kcal Atomic # 8 Polarization: -47.06 SS G_CDS: -2.61 Total: -49.66 kcal Atomic # 14 Polarization: 49.04 SS G_CDS: 2.03 Total: 51.06 kcal Total: -89.68 2.44 -87.24 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112559607.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.910 kcal (2) G-P(sol) polarization free energy of solvation -89.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds