Wall clock time and date at job start Sat Apr 11 2020 06:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42904 * 113.99811 * 2 1 4 4 C 1.52994 * 109.47089 * 180.02562 * 3 2 1 5 5 O 1.42901 * 109.47055 * 65.00547 * 4 3 2 6 6 C 1.42899 * 113.99978 * 179.97438 * 5 4 3 7 7 C 1.50699 * 109.47202 * 179.97438 * 6 5 4 8 8 O 1.21275 * 119.99999 * 0.02562 * 7 6 5 9 9 N 1.34778 * 120.00247 * 179.97438 * 7 6 5 10 10 C 1.46932 * 120.62927 * 0.02562 * 9 7 6 11 11 C 1.53194 * 108.77242 * 233.60579 * 10 9 7 12 12 C 1.53034 * 109.31284 * 305.36090 * 11 10 9 13 13 C 1.53049 * 109.53694 * 61.36967 * 12 11 10 14 14 H 1.08992 * 109.49765 * 58.61610 * 13 12 11 15 15 C 1.53006 * 109.49710 * 178.68375 * 13 12 11 16 16 H 1.08997 * 109.99201 * 305.44421 * 15 13 12 17 17 C 1.54334 * 109.98803 * 184.40961 * 15 13 12 18 18 C 1.55150 * 103.01937 * 218.66367 * 17 15 13 19 19 C 1.54910 * 101.58368 * 35.30888 * 18 17 15 20 20 N 1.47020 * 109.88125 * 66.54320 * 15 13 12 21 21 C 1.36937 * 125.64757 * 298.38750 * 20 15 13 22 22 H 1.08006 * 119.99711 * 139.09776 * 21 20 15 23 23 C 1.38807 * 120.00202 * 319.10057 * 21 20 15 24 24 N 1.31627 * 119.99772 * 165.02046 * 23 21 20 25 25 Si 1.86791 * 120.00120 * 345.02582 * 23 21 20 26 26 H 1.48505 * 109.47423 * 89.01782 * 25 23 21 27 27 H 1.48498 * 109.47126 * 329.01320 * 25 23 21 28 28 H 1.48513 * 109.47232 * 209.01258 * 25 23 21 29 29 C 1.46923 * 120.63334 * 180.02562 * 9 7 6 30 30 H 1.08997 * 109.47652 * 59.99625 * 1 2 3 31 31 H 1.09002 * 109.47029 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47240 * 299.99680 * 1 2 3 33 33 H 1.09002 * 109.47059 * 60.00010 * 3 2 1 34 34 H 1.08999 * 109.47384 * 300.00742 * 3 2 1 35 35 H 1.08997 * 109.47473 * 304.99945 * 4 3 2 36 36 H 1.09000 * 109.47182 * 185.00090 * 4 3 2 37 37 H 1.09000 * 109.47336 * 59.99856 * 6 5 4 38 38 H 1.09002 * 109.47195 * 299.99437 * 6 5 4 39 39 H 1.08997 * 109.58617 * 113.81524 * 10 9 7 40 40 H 1.09001 * 109.70125 * 353.45862 * 10 9 7 41 41 H 1.09005 * 109.49450 * 185.41591 * 11 10 9 42 42 H 1.09002 * 109.52492 * 65.33251 * 11 10 9 43 43 H 1.09005 * 109.46448 * 301.35037 * 12 11 10 44 44 H 1.09002 * 109.44921 * 181.38144 * 12 11 10 45 45 H 1.08998 * 110.84753 * 100.19866 * 17 15 13 46 46 H 1.08995 * 110.66844 * 337.04734 * 17 15 13 47 47 H 1.08998 * 111.00610 * 277.23509 * 18 17 15 48 48 H 1.08999 * 111.03922 * 153.39885 * 18 17 15 49 49 H 1.08999 * 110.37095 * 204.15424 * 19 18 17 50 50 H 1.09000 * 110.36786 * 81.82963 * 19 18 17 51 51 H 0.97000 * 119.99832 * 179.97438 * 24 23 21 52 52 H 1.09001 * 109.58485 * 6.60796 * 29 9 7 53 53 H 1.08999 * 109.58737 * 246.18320 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5353 1.1847 -0.0006 5 8 3.9647 0.5799 -1.2220 6 6 5.3810 0.4204 -1.3252 7 6 5.7193 -0.2239 -2.6448 8 8 4.8346 -0.5172 -3.4208 9 7 7.0049 -0.4733 -2.9632 10 6 8.0877 -0.1231 -2.0337 11 6 9.1120 0.7428 -2.7739 12 6 9.5778 0.0101 -4.0341 13 6 8.3829 -0.2236 -4.9614 14 1 7.9309 0.7337 -5.2206 15 6 8.8552 -0.9270 -6.2355 16 1 9.6612 -0.3577 -6.6986 17 6 7.6803 -1.0693 -7.2260 18 6 7.9094 -2.4755 -7.8403 19 6 8.4745 -3.2564 -6.6277 20 7 9.3218 -2.2836 -5.9140 21 6 10.3667 -2.5926 -5.0846 22 1 10.2839 -3.4220 -4.3977 23 6 11.5322 -1.8399 -5.1265 24 7 12.4117 -1.9338 -4.1518 25 14 11.8524 -0.6936 -6.5662 26 1 11.2708 0.6414 -6.2749 27 1 11.2248 -1.2504 -7.7914 28 1 13.3165 -0.5603 -6.7768 29 6 7.3504 -1.1004 -4.2461 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.6885 1.8464 0.8900 34 1 1.6884 1.8465 -0.8899 35 1 3.8514 0.5683 0.8409 36 1 3.9784 2.1766 0.0889 37 1 5.7358 -0.2117 -0.5111 38 1 5.8620 1.3966 -1.2633 39 1 8.5694 -1.0325 -1.6747 40 1 7.6814 0.4332 -1.1890 41 1 9.9674 0.9296 -2.1246 42 1 8.6532 1.6913 -3.0532 43 1 10.0147 -0.9491 -3.7559 44 1 10.3250 0.6136 -4.5495 45 1 7.7269 -0.2997 -7.9964 46 1 6.7266 -1.0291 -6.6999 47 1 8.6364 -2.4338 -8.6514 48 1 6.9705 -2.9109 -8.1822 49 1 9.0718 -4.1029 -6.9665 50 1 7.6633 -3.5968 -5.9842 51 1 13.2264 -1.4081 -4.1813 52 1 6.4558 -1.1881 -4.8626 53 1 7.7720 -2.0895 -4.0675 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120347813.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:44 Heat of formation + Delta-G solvation = -111.719777 kcal Electronic energy + Delta-G solvation = -31909.486592 eV Core-core repulsion = 27781.679800 eV Total energy + Delta-G solvation = -4127.806792 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 2.59 seconds Orbital eigenvalues (eV) -41.46876 -40.08870 -39.19520 -38.07587 -37.56748 -34.80536 -33.98579 -32.40245 -31.74455 -31.58909 -29.45987 -28.06039 -27.09805 -26.37990 -25.74183 -24.06738 -23.48759 -22.13792 -21.63139 -21.13450 -20.00360 -18.59640 -18.45493 -17.81881 -17.65906 -17.56962 -17.00869 -16.82546 -16.43373 -16.13960 -15.79005 -15.60515 -15.37608 -15.26122 -15.08844 -14.93742 -14.64081 -14.20093 -14.02681 -13.73506 -13.61425 -13.44405 -13.32658 -13.11583 -12.95861 -12.89749 -12.83613 -12.46879 -12.33040 -12.18723 -12.14697 -11.99672 -11.87935 -11.80229 -11.70198 -11.45092 -11.17059 -10.87121 -10.73496 -10.68428 -10.60060 -10.31903 -9.60667 -8.58712 -8.14124 -5.53328 1.30137 1.40033 1.48977 1.56941 1.75544 2.44106 2.83967 2.89807 3.13040 3.41443 3.53604 3.80278 3.89708 4.03323 4.08856 4.10011 4.15430 4.20006 4.21907 4.23283 4.27698 4.30119 4.45154 4.45619 4.47571 4.50838 4.58094 4.59598 4.64781 4.69525 4.76374 4.78741 4.86192 4.87173 4.91038 5.00783 5.05024 5.11894 5.16012 5.18403 5.27049 5.27511 5.39843 5.49020 5.57279 5.87588 6.06935 6.08631 6.24427 6.28238 6.47723 6.91873 7.15479 7.60287 8.31430 9.04470 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.018261 B = 0.002866 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.953927 B = 9768.498219 C =10634.813503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.419 6.419 3 C 0.057 3.943 4 C 0.054 3.946 5 O -0.394 6.394 6 C 0.051 3.949 7 C 0.506 3.494 8 O -0.578 6.578 9 N -0.605 5.605 10 C 0.110 3.890 11 C -0.126 4.126 12 C -0.137 4.137 13 C -0.090 4.090 14 H 0.060 0.940 15 C 0.143 3.857 16 H 0.018 0.982 17 C -0.127 4.127 18 C -0.125 4.125 19 C 0.121 3.879 20 N -0.613 5.613 21 C -0.227 4.227 22 H 0.045 0.955 23 C 0.017 3.983 24 N -0.936 5.936 25 Si 0.925 3.075 26 H -0.269 1.269 27 H -0.275 1.275 28 H -0.316 1.316 29 C 0.143 3.857 30 H 0.043 0.957 31 H 0.088 0.912 32 H 0.060 0.940 33 H 0.097 0.903 34 H 0.052 0.948 35 H 0.068 0.932 36 H 0.097 0.903 37 H 0.103 0.897 38 H 0.112 0.888 39 H 0.065 0.935 40 H 0.120 0.880 41 H 0.081 0.919 42 H 0.068 0.932 43 H 0.097 0.903 44 H 0.030 0.970 45 H 0.080 0.920 46 H 0.076 0.924 47 H 0.062 0.938 48 H 0.094 0.906 49 H 0.041 0.959 50 H 0.029 0.971 51 H 0.262 0.738 52 H 0.071 0.929 53 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.990 10.210 8.821 21.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.339 6.339 3 C -0.019 4.019 4 C -0.022 4.022 5 O -0.313 6.313 6 C -0.028 4.028 7 C 0.295 3.705 8 O -0.458 6.458 9 N -0.338 5.338 10 C -0.012 4.012 11 C -0.164 4.164 12 C -0.174 4.174 13 C -0.110 4.110 14 H 0.078 0.922 15 C 0.037 3.963 16 H 0.035 0.965 17 C -0.164 4.164 18 C -0.163 4.163 19 C -0.003 4.003 20 N -0.339 5.339 21 C -0.356 4.356 22 H 0.063 0.937 23 C -0.181 4.181 24 N -0.580 5.580 25 Si 0.756 3.244 26 H -0.195 1.195 27 H -0.200 1.200 28 H -0.245 1.245 29 C 0.020 3.980 30 H 0.061 0.939 31 H 0.107 0.893 32 H 0.079 0.921 33 H 0.115 0.885 34 H 0.070 0.930 35 H 0.086 0.914 36 H 0.115 0.885 37 H 0.121 0.879 38 H 0.130 0.870 39 H 0.083 0.917 40 H 0.138 0.862 41 H 0.099 0.901 42 H 0.086 0.914 43 H 0.115 0.885 44 H 0.049 0.951 45 H 0.099 0.901 46 H 0.095 0.905 47 H 0.081 0.919 48 H 0.113 0.887 49 H 0.060 0.940 50 H 0.047 0.953 51 H 0.072 0.928 52 H 0.090 0.910 53 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -17.265 9.841 8.401 21.575 hybrid contribution 0.960 0.594 -0.716 1.337 sum -16.305 10.435 7.685 20.828 Atomic orbital electron populations 1.22889 0.79714 1.03521 1.00862 1.87936 1.21369 1.28958 1.95598 1.22759 0.92163 0.84928 1.02041 1.22894 0.93949 0.99075 0.86286 1.88041 1.20506 1.82911 1.39860 1.22318 0.83760 1.02389 0.94319 1.20964 0.81793 0.78594 0.89142 1.90662 1.47756 1.54149 1.53198 1.48221 1.05806 1.60333 1.19443 1.21926 0.87578 0.99849 0.91834 1.21866 0.98893 0.98353 0.97244 1.22007 0.96411 1.03144 0.95809 1.21643 0.95751 0.97407 0.96249 0.92184 1.21337 0.94106 0.87365 0.93502 0.96488 1.22660 0.97575 0.98226 0.97983 1.22705 1.01311 0.95309 0.96947 1.21885 0.93347 0.92921 0.92159 1.44736 1.34711 1.00861 1.53616 1.18092 0.90392 1.15045 1.12048 0.93710 1.25715 0.94884 0.99746 0.97729 1.69877 1.11656 1.43894 1.32594 0.86303 0.74397 0.80501 0.83163 1.19537 1.20032 1.24539 1.21309 0.97194 0.95768 0.83682 0.93874 0.89346 0.92108 0.88544 0.92963 0.91371 0.88478 0.87894 0.87001 0.91658 0.86235 0.90057 0.91351 0.88509 0.95142 0.90120 0.90500 0.91949 0.88717 0.94025 0.95264 0.92847 0.91025 0.92209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 113.37 1.25 1.64 16 2 O -0.42 -9.54 10.67 -144.34 -1.54 -11.08 16 3 C 0.06 0.94 6.32 71.98 0.45 1.39 16 4 C 0.05 0.88 6.32 71.98 0.45 1.34 16 5 O -0.39 -10.50 9.84 -125.55 -1.24 -11.73 16 6 C 0.05 1.14 4.77 71.24 0.34 1.48 16 7 C 0.51 16.55 7.78 87.66 0.68 17.23 16 8 O -0.58 -24.38 15.91 16.02 0.25 -24.12 16 9 N -0.60 -19.46 2.97 -818.92 -2.43 -21.89 16 10 C 0.11 2.90 6.34 86.36 0.55 3.44 16 11 C -0.13 -3.73 6.08 30.67 0.19 -3.55 16 12 C -0.14 -5.48 3.62 30.62 0.11 -5.37 16 13 C -0.09 -3.43 2.14 -10.71 -0.02 -3.45 16 14 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 15 C 0.14 5.84 2.12 45.35 0.10 5.94 16 16 H 0.02 0.79 3.68 -2.39 -0.01 0.78 16 17 C -0.13 -4.22 6.31 31.78 0.20 -4.02 16 18 C -0.12 -3.99 7.09 31.98 0.23 -3.76 16 19 C 0.12 4.73 7.23 86.85 0.63 5.36 16 20 N -0.61 -27.84 1.52 -668.23 -1.01 -28.85 16 21 C -0.23 -12.04 8.23 84.03 0.69 -11.35 16 22 H 0.05 2.67 8.06 -2.91 -0.02 2.65 16 23 C 0.02 0.94 3.47 84.86 0.29 1.24 16 24 N -0.94 -53.95 13.96 21.65 0.30 -53.64 16 25 Si 0.92 45.44 23.30 68.60 1.60 47.03 16 26 H -0.27 -12.60 5.87 99.48 0.58 -12.02 16 27 H -0.27 -13.45 7.10 99.48 0.71 -12.74 16 28 H -0.32 -15.96 7.11 99.48 0.71 -15.25 16 29 C 0.14 5.39 5.28 86.36 0.46 5.84 16 30 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.10 1.78 7.94 -2.39 -0.02 1.76 16 38 H 0.11 1.69 7.69 -2.39 -0.02 1.67 16 39 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.12 2.01 5.95 -2.39 -0.01 1.99 16 41 H 0.08 2.26 8.14 -2.38 -0.02 2.24 16 42 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.10 4.65 4.53 -2.38 -0.01 4.64 16 44 H 0.03 1.32 5.76 -2.39 -0.01 1.31 16 45 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 46 H 0.08 2.49 6.14 -2.39 -0.01 2.48 16 47 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 48 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 49 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 50 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 51 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 52 H 0.07 2.82 5.40 -2.39 -0.01 2.81 16 53 H 0.06 2.57 7.17 -2.39 -0.02 2.56 16 Total: -1.00 -74.05 393.24 3.29 -70.76 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: 0.76 Total: 20.13 kcal Atomic # 6 Polarization: 6.81 SS G_CDS: 6.59 Total: 13.40 kcal Atomic # 7 Polarization: -101.24 SS G_CDS: -3.15 Total: -104.39 kcal Atomic # 8 Polarization: -44.42 SS G_CDS: -2.52 Total: -46.94 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 1.60 Total: 47.03 kcal Total: -74.05 3.29 -70.76 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120347813.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.960 kcal (2) G-P(sol) polarization free energy of solvation -74.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.59 seconds