Wall clock time and date at job start Sat Apr 11 2020 06:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42902 * 113.99742 * 2 1 4 4 C 1.53001 * 109.47126 * 180.02562 * 3 2 1 5 5 C 1.53006 * 109.47242 * 174.55565 * 4 3 2 6 6 N 1.46494 * 109.45960 * 305.58964 * 5 4 3 7 7 C 1.34776 * 120.00466 * 300.88576 * 6 5 4 8 8 O 1.21275 * 120.00074 * 354.97183 * 7 6 5 9 9 C 1.50701 * 119.99843 * 174.69802 * 7 6 5 10 10 H 1.08999 * 109.48285 * 55.27561 * 9 7 6 11 11 C 1.53094 * 109.48222 * 295.25209 * 9 7 6 12 12 C 1.53180 * 109.16034 * 182.42349 * 11 9 7 13 13 C 1.53174 * 109.05011 * 56.96224 * 12 11 9 14 14 C 1.53096 * 109.16052 * 303.02437 * 13 12 11 15 15 O 1.42902 * 109.41584 * 57.60919 * 14 13 12 16 16 C 1.53039 * 109.45738 * 65.56699 * 5 4 3 17 17 C 1.53164 * 109.32719 * 181.38458 * 16 5 4 18 18 N 1.46925 * 108.76562 * 305.35387 * 17 16 5 19 19 C 1.36936 * 120.62803 * 233.62991 * 18 17 16 20 20 H 1.07996 * 119.99735 * 146.28275 * 19 18 17 21 21 C 1.38815 * 120.00181 * 326.27432 * 19 18 17 22 22 N 1.31615 * 119.99677 * 167.62520 * 21 19 18 23 23 Si 1.86802 * 119.99947 * 347.62783 * 21 19 18 24 24 H 1.48504 * 109.46923 * 86.70923 * 23 21 19 25 25 H 1.48501 * 109.47231 * 206.70717 * 23 21 19 26 26 H 1.48498 * 109.47009 * 326.70820 * 23 21 19 27 27 C 1.46927 * 118.73874 * 53.61221 * 18 17 16 28 28 C 1.53042 * 109.45815 * 185.61706 * 5 4 3 29 29 H 1.08995 * 109.47731 * 59.99549 * 1 2 3 30 30 H 1.09003 * 109.47029 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.46974 * 299.99766 * 1 2 3 32 32 H 1.08999 * 109.47661 * 60.00688 * 3 2 1 33 33 H 1.09007 * 109.47601 * 300.00112 * 3 2 1 34 34 H 1.09001 * 109.46988 * 54.56157 * 4 3 2 35 35 H 1.09000 * 109.47270 * 294.55925 * 4 3 2 36 36 H 0.97006 * 119.99533 * 120.88087 * 6 5 4 37 37 H 1.08999 * 109.52077 * 302.31740 * 11 9 7 38 38 H 1.08995 * 109.52062 * 62.50406 * 11 9 7 39 39 H 1.09001 * 109.53381 * 297.09360 * 12 11 9 40 40 H 1.09000 * 109.61268 * 176.88291 * 12 11 9 41 41 H 1.09000 * 109.52251 * 183.12144 * 13 12 11 42 42 H 1.08996 * 109.52047 * 62.92705 * 13 12 11 43 43 H 1.08997 * 109.48503 * 297.62628 * 14 13 12 44 44 H 1.09002 * 109.48895 * 177.59573 * 14 13 12 45 45 H 1.09005 * 109.49692 * 301.32330 * 16 5 4 46 46 H 1.08998 * 109.49819 * 61.41499 * 16 5 4 47 47 H 1.08998 * 109.58737 * 185.56990 * 17 16 5 48 48 H 1.09005 * 109.70530 * 65.20786 * 17 16 5 49 49 H 0.97005 * 119.99577 * 180.02562 * 22 21 19 50 50 H 1.09005 * 109.58564 * 186.60241 * 27 18 17 51 51 H 1.09000 * 109.70484 * 66.24354 * 27 18 17 52 52 H 1.09000 * 109.50026 * 298.58125 * 28 5 4 53 53 H 1.09002 * 109.49680 * 58.65097 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 6 4.1571 2.5761 -0.1375 6 7 3.6121 3.2396 -1.3244 7 6 3.7640 2.6778 -2.5401 8 8 4.4292 1.6714 -2.6642 9 6 3.1021 3.2967 -3.7442 10 1 3.4039 4.3407 -3.8284 11 6 1.5812 3.2159 -3.5887 12 6 0.9163 3.7918 -4.8428 13 6 1.4170 3.0252 -6.0709 14 6 2.9442 3.1137 -6.1303 15 8 3.4978 2.5899 -4.9215 16 6 3.8293 3.4055 1.1061 17 6 4.4236 4.8086 0.9508 18 7 5.8604 4.6849 0.6698 19 6 6.7809 5.3472 1.4374 20 1 7.7457 4.9012 1.6285 21 6 6.4740 6.5920 1.9697 22 7 7.2454 7.1197 2.8964 23 14 4.9661 7.5179 1.3709 24 1 3.7789 7.0890 2.1531 25 1 5.1771 8.9767 1.5512 26 1 4.7437 7.2239 -0.0676 27 6 6.2907 3.8368 -0.4501 28 6 5.6753 2.4444 -0.2789 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.6886 1.8464 0.8900 33 1 1.6885 1.8465 -0.8900 34 1 3.8502 0.5622 -0.8382 35 1 3.8643 0.7301 0.9338 36 1 3.1417 4.0833 -1.2354 37 1 1.2827 2.1751 -3.4636 38 1 1.2732 3.7915 -2.7159 39 1 1.1747 4.8462 -4.9408 40 1 -0.1658 3.6874 -4.7639 41 1 0.9913 3.4646 -6.9730 42 1 1.1153 1.9805 -5.9960 43 1 3.2438 4.1554 -6.2457 44 1 3.3093 2.5343 -6.9783 45 1 2.7477 3.4794 1.2194 46 1 4.2558 2.9251 1.9867 47 1 4.2787 5.3710 1.8732 48 1 3.9332 5.3263 0.1263 49 1 7.0307 7.9894 3.2686 50 1 7.3779 3.7580 -0.4520 51 1 5.9542 4.2719 -1.3911 52 1 6.0844 1.9731 0.6147 53 1 5.9078 1.8337 -1.1514 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001151063289.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:44 Heat of formation + Delta-G solvation = -129.902086 kcal Electronic energy + Delta-G solvation = -32929.255120 eV Core-core repulsion = 28800.659885 eV Total energy + Delta-G solvation = -4128.595236 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.93571 -40.32209 -38.77193 -38.63496 -36.31189 -34.71400 -33.95383 -33.43479 -32.12246 -31.79007 -30.74592 -27.73700 -26.75887 -26.22251 -24.87235 -24.57653 -24.19420 -22.39723 -21.93255 -21.21642 -20.28231 -19.01688 -18.46851 -17.65627 -17.34945 -17.09552 -16.93737 -16.70164 -16.28282 -16.08193 -15.86554 -15.55968 -15.42672 -15.38732 -15.30548 -15.00943 -14.63434 -14.31360 -14.25154 -14.06748 -13.68446 -13.62228 -13.47787 -13.32274 -13.08986 -12.72333 -12.49707 -12.46217 -12.32693 -12.26782 -12.13999 -12.06534 -12.03221 -11.90026 -11.62296 -11.44596 -11.38239 -11.29725 -10.73712 -10.59262 -10.52517 -10.29972 -10.02731 -8.81708 -8.13616 -5.56389 1.30982 1.44024 1.54202 1.62152 1.85534 2.44081 2.79453 3.03344 3.13771 3.31052 3.53433 3.72468 3.75655 3.87601 3.89309 4.01795 4.03477 4.06163 4.14414 4.20803 4.29379 4.31309 4.45077 4.47748 4.49378 4.52959 4.55267 4.60624 4.63650 4.67581 4.79424 4.83177 4.85529 4.90815 4.93544 4.98215 5.01304 5.04694 5.07576 5.11137 5.14339 5.18774 5.22489 5.32218 5.35639 5.61675 5.92626 6.12898 6.15956 6.26120 6.60691 6.94525 7.28431 7.61552 8.04126 9.06610 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.010268 B = 0.004244 C = 0.003569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2726.133556 B = 6595.249224 C = 7844.029511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.419 6.419 3 C 0.070 3.930 4 C -0.120 4.120 5 C 0.204 3.796 6 N -0.707 5.707 7 C 0.520 3.480 8 O -0.553 6.553 9 C 0.073 3.927 10 H 0.095 0.905 11 C -0.139 4.139 12 C -0.119 4.119 13 C -0.154 4.154 14 C 0.050 3.950 15 O -0.388 6.388 16 C -0.129 4.129 17 C 0.117 3.883 18 N -0.615 5.615 19 C -0.254 4.254 20 H 0.038 0.962 21 C -0.036 4.036 22 N -0.966 5.966 23 Si 0.961 3.039 24 H -0.259 1.259 25 H -0.317 1.317 26 H -0.254 1.254 27 C 0.158 3.842 28 C -0.135 4.135 29 H 0.048 0.952 30 H 0.094 0.906 31 H 0.052 0.948 32 H 0.065 0.935 33 H 0.054 0.946 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.409 0.591 37 H 0.063 0.937 38 H 0.097 0.903 39 H 0.078 0.922 40 H 0.087 0.913 41 H 0.096 0.904 42 H 0.063 0.937 43 H 0.062 0.938 44 H 0.103 0.897 45 H 0.100 0.900 46 H 0.075 0.925 47 H 0.058 0.942 48 H 0.044 0.956 49 H 0.262 0.738 50 H 0.041 0.959 51 H 0.026 0.974 52 H 0.060 0.940 53 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.370 -7.618 -15.092 27.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.339 6.339 3 C -0.006 4.006 4 C -0.159 4.159 5 C 0.118 3.882 6 N -0.361 5.361 7 C 0.307 3.693 8 O -0.430 6.430 9 C 0.012 3.988 10 H 0.112 0.888 11 C -0.177 4.177 12 C -0.156 4.156 13 C -0.192 4.192 14 C -0.026 4.026 15 O -0.307 6.307 16 C -0.168 4.168 17 C -0.008 4.008 18 N -0.340 5.340 19 C -0.384 4.384 20 H 0.056 0.944 21 C -0.231 4.231 22 N -0.611 5.611 23 Si 0.789 3.211 24 H -0.185 1.185 25 H -0.246 1.246 26 H -0.178 1.178 27 C 0.033 3.967 28 C -0.175 4.175 29 H 0.067 0.933 30 H 0.112 0.888 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.246 0.754 37 H 0.082 0.918 38 H 0.116 0.884 39 H 0.097 0.903 40 H 0.106 0.894 41 H 0.114 0.886 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.121 0.879 45 H 0.118 0.882 46 H 0.094 0.906 47 H 0.076 0.924 48 H 0.061 0.939 49 H 0.071 0.929 50 H 0.060 0.940 51 H 0.044 0.956 52 H 0.079 0.921 53 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -20.634 -8.563 -15.094 26.961 hybrid contribution -0.135 1.328 0.218 1.352 sum -20.769 -7.235 -14.875 26.551 Atomic orbital electron populations 1.22910 0.79554 1.03679 1.00854 1.87849 1.21503 1.28963 1.95593 1.22516 0.92839 0.84330 1.00944 1.21779 0.94458 0.96436 1.03198 1.19978 0.92390 0.91290 0.84507 1.45966 1.58406 1.26204 1.05529 1.20545 0.80186 0.84167 0.84435 1.90647 1.40070 1.26601 1.85646 1.21983 0.95717 0.96309 0.84792 0.88757 1.22133 0.91737 1.02793 1.01063 1.21616 1.01217 1.00065 0.92703 1.22195 0.95528 1.01528 0.99950 1.22893 0.93924 0.99784 0.85976 1.88026 1.71554 1.56645 1.14468 1.22287 1.01964 0.95986 0.96581 1.21513 0.84003 0.96254 0.99000 1.44354 1.01661 1.54991 1.33009 1.18782 0.97174 0.98095 1.24319 0.94384 1.26188 1.01582 0.97167 0.98137 1.69939 1.42293 1.18974 1.29924 0.85739 0.79610 0.75707 0.80031 1.18519 1.24596 1.17770 1.20841 0.97097 0.89790 0.88979 1.22269 0.95122 0.97964 1.02152 0.93344 0.88781 0.92901 0.91707 0.92770 0.91608 0.90571 0.75374 0.91800 0.88417 0.90348 0.89438 0.88576 0.91862 0.91964 0.87914 0.88215 0.90629 0.92410 0.93868 0.92936 0.94035 0.95554 0.92116 0.90785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 113.37 1.25 1.67 16 2 O -0.42 -10.45 10.70 -148.98 -1.59 -12.05 16 3 C 0.07 1.59 5.44 71.98 0.39 1.98 16 4 C -0.12 -3.32 4.31 30.60 0.13 -3.19 16 5 C 0.20 5.86 0.35 3.63 0.00 5.86 16 6 N -0.71 -17.70 3.05 -422.81 -1.29 -18.99 16 7 C 0.52 14.61 6.30 87.66 0.55 15.17 16 8 O -0.55 -20.26 12.81 15.97 0.20 -20.05 16 9 C 0.07 1.59 3.06 29.88 0.09 1.68 16 10 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 11 C -0.14 -2.10 5.37 30.69 0.16 -1.94 16 12 C -0.12 -1.29 6.03 30.71 0.19 -1.11 16 13 C -0.15 -1.87 6.14 30.68 0.19 -1.68 16 14 C 0.05 0.83 6.84 72.01 0.49 1.32 16 15 O -0.39 -10.00 9.94 -129.99 -1.29 -11.29 16 16 C -0.13 -3.71 4.75 30.66 0.15 -3.56 16 17 C 0.12 4.32 3.89 86.35 0.34 4.66 16 18 N -0.62 -27.95 2.71 -699.14 -1.90 -29.85 16 19 C -0.25 -14.36 10.04 84.03 0.84 -13.52 16 20 H 0.04 2.44 8.06 -2.91 -0.02 2.41 16 21 C -0.04 -2.09 5.34 84.86 0.45 -1.63 16 22 N -0.97 -60.40 13.97 21.65 0.30 -60.10 16 23 Si 0.96 43.87 24.27 68.60 1.66 45.54 16 24 H -0.26 -10.63 6.48 99.48 0.64 -9.98 16 25 H -0.32 -15.04 7.11 99.48 0.71 -14.33 16 26 H -0.25 -10.68 6.60 99.48 0.66 -10.02 16 27 C 0.16 6.44 6.26 86.36 0.54 6.98 16 28 C -0.14 -4.78 4.68 30.67 0.14 -4.64 16 29 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 32 H 0.06 1.25 6.82 -2.39 -0.02 1.24 16 33 H 0.05 1.13 7.04 -2.38 -0.02 1.11 16 34 H 0.07 2.18 6.45 -2.39 -0.02 2.17 16 35 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.41 8.32 7.25 -92.70 -0.67 7.65 16 37 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 45 H 0.10 2.13 6.65 -2.38 -0.02 2.12 16 46 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 47 H 0.06 2.38 4.63 -2.39 -0.01 2.37 16 48 H 0.04 1.43 5.68 -2.38 -0.01 1.42 16 49 H 0.26 15.51 8.31 -92.70 -0.77 14.74 16 50 H 0.04 1.82 7.93 -2.38 -0.02 1.80 16 51 H 0.03 1.05 7.74 -2.39 -0.02 1.03 16 52 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 53 H 0.07 2.77 6.11 -2.39 -0.01 2.75 16 Total: -1.00 -75.85 392.24 2.12 -73.73 By element: Atomic # 1 Polarization: 24.91 SS G_CDS: 0.11 Total: 25.02 kcal Atomic # 6 Polarization: 2.14 SS G_CDS: 5.91 Total: 8.05 kcal Atomic # 7 Polarization: -106.05 SS G_CDS: -2.88 Total: -108.94 kcal Atomic # 8 Polarization: -40.71 SS G_CDS: -2.68 Total: -43.39 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 1.66 Total: 45.54 kcal Total: -75.85 2.12 -73.73 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151063289.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.174 kcal (2) G-P(sol) polarization free energy of solvation -75.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds