Wall clock time and date at job start Sat Apr 11 2020 06:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42895 * 114.00302 * 2 1 4 4 C 1.52994 * 109.47319 * 179.97438 * 3 2 1 5 5 C 1.53007 * 109.47448 * 174.63421 * 4 3 2 6 6 N 1.46502 * 109.45589 * 305.69014 * 5 4 3 7 7 C 1.34772 * 120.00176 * 300.96570 * 6 5 4 8 8 O 1.21282 * 120.00092 * 355.06608 * 7 6 5 9 9 C 1.50699 * 119.99889 * 175.05697 * 7 6 5 10 10 H 1.08998 * 109.48613 * 305.02366 * 9 7 6 11 11 C 1.53088 * 109.48259 * 65.06410 * 9 7 6 12 12 C 1.53174 * 109.16584 * 177.58903 * 11 9 7 13 13 C 1.53172 * 109.03660 * 303.01585 * 12 11 9 14 14 C 1.53093 * 109.16345 * 56.98422 * 13 12 11 15 15 O 1.42904 * 109.48097 * 185.00502 * 9 7 6 16 16 C 1.53032 * 109.46189 * 185.71807 * 5 4 3 17 17 C 1.53193 * 109.31211 * 178.60125 * 16 5 4 18 18 N 1.46930 * 108.76656 * 54.65522 * 17 16 5 19 19 C 1.36935 * 120.63331 * 126.40509 * 18 17 16 20 20 H 1.07999 * 119.99851 * 326.29305 * 19 18 17 21 21 C 1.38813 * 119.99663 * 146.29120 * 19 18 17 22 22 N 1.31621 * 119.99368 * 167.60004 * 21 19 18 23 23 Si 1.86793 * 120.00454 * 347.59571 * 21 19 18 24 24 H 1.48508 * 109.46957 * 86.75263 * 23 21 19 25 25 H 1.48496 * 109.47293 * 206.75331 * 23 21 19 26 26 H 1.48506 * 109.47304 * 326.75325 * 23 21 19 27 27 C 1.46932 * 118.73468 * 306.38340 * 18 17 16 28 28 C 1.53041 * 109.45638 * 65.65884 * 5 4 3 29 29 H 1.09003 * 109.46654 * 60.00597 * 1 2 3 30 30 H 1.08999 * 109.47041 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47036 * 300.00710 * 1 2 3 32 32 H 1.09001 * 109.47092 * 299.99752 * 3 2 1 33 33 H 1.09000 * 109.47134 * 59.99114 * 3 2 1 34 34 H 1.08998 * 109.47395 * 294.63525 * 4 3 2 35 35 H 1.09000 * 109.47259 * 54.63751 * 4 3 2 36 36 H 0.97001 * 119.99735 * 120.97025 * 6 5 4 37 37 H 1.09006 * 109.52089 * 297.49321 * 11 9 7 38 38 H 1.09000 * 109.52251 * 57.67930 * 11 9 7 39 39 H 1.09005 * 109.54248 * 183.14942 * 12 11 9 40 40 H 1.09005 * 109.54169 * 62.88801 * 12 11 9 41 41 H 1.08991 * 109.52599 * 297.07443 * 13 12 11 42 42 H 1.09005 * 109.52139 * 176.88435 * 13 12 11 43 43 H 1.08997 * 109.48530 * 182.41086 * 14 13 12 44 44 H 1.09000 * 109.49022 * 62.37346 * 14 13 12 45 45 H 1.09002 * 109.49470 * 298.56328 * 16 5 4 46 46 H 1.09000 * 109.50231 * 58.66445 * 16 5 4 47 47 H 1.09005 * 109.59906 * 294.86709 * 17 16 5 48 48 H 1.09006 * 109.58933 * 174.43243 * 17 16 5 49 49 H 0.97003 * 119.99597 * 180.02562 * 22 21 19 50 50 H 1.08998 * 109.59042 * 293.82059 * 27 18 17 51 51 H 1.09000 * 109.58458 * 173.39766 * 27 18 17 52 52 H 1.08995 * 109.50236 * 301.33944 * 28 5 4 53 53 H 1.08997 * 109.49978 * 61.40743 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 6 4.1575 2.5760 -0.1343 6 7 3.6117 3.2416 -1.3197 7 6 3.7613 2.6810 -2.5362 8 8 4.4237 1.6728 -2.6620 9 6 3.1054 3.3067 -3.7400 10 1 2.0363 3.4144 -3.5567 11 6 3.7207 4.6844 -3.9983 12 6 3.0917 5.2880 -5.2578 13 6 3.3040 4.3273 -6.4318 14 6 2.7047 2.9632 -6.0796 15 8 3.3112 2.4728 -4.8822 16 6 5.6754 2.4442 -0.2769 17 6 6.2910 3.8367 -0.4468 18 7 5.8618 4.6833 0.6748 19 6 6.7831 5.3450 1.4420 20 1 7.7483 4.8989 1.6314 21 6 6.4764 6.5889 1.9762 22 7 7.2485 7.1156 2.9029 23 14 4.9680 7.5154 1.3799 24 1 3.7816 7.0861 2.1632 25 1 5.1793 8.9741 1.5610 26 1 4.7438 7.2226 -0.0587 27 6 4.4252 4.8068 0.9572 28 6 3.8305 3.4034 1.1110 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.6887 1.8463 -0.8900 33 1 1.6886 1.8464 0.8899 34 1 3.8635 0.7290 0.9349 35 1 3.8511 0.5628 -0.8372 36 1 3.1428 4.0859 -1.2291 37 1 3.5262 5.3358 -3.1462 38 1 4.7963 4.5819 -4.1416 39 1 3.5651 6.2446 -5.4793 40 1 2.0239 5.4367 -5.0968 41 1 4.3712 4.2175 -6.6243 42 1 2.8115 4.7231 -7.3200 43 1 2.8905 2.2632 -6.8942 44 1 1.6304 3.0665 -5.9269 45 1 6.0850 1.9716 0.6158 46 1 5.9073 1.8352 -1.1506 47 1 5.9518 4.2744 -1.3857 48 1 7.3782 3.7578 -0.4497 49 1 7.0340 7.9847 3.2765 50 1 3.9338 5.3236 0.1328 51 1 4.2812 5.3679 1.8805 52 1 2.7490 3.4771 1.2252 53 1 4.2572 2.9214 1.9905 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001151063290.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:48 Heat of formation + Delta-G solvation = -129.593479 kcal Electronic energy + Delta-G solvation = -32917.816966 eV Core-core repulsion = 28789.235113 eV Total energy + Delta-G solvation = -4128.581854 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.93363 -40.32739 -38.76785 -38.64307 -36.30656 -34.72669 -33.95447 -33.45192 -32.10051 -31.76952 -30.76863 -27.73299 -26.77142 -26.21737 -24.87314 -24.57709 -24.19121 -22.39953 -21.94123 -21.20652 -20.27385 -19.02753 -18.47086 -17.69102 -17.33674 -17.07870 -16.97886 -16.62014 -16.31851 -16.12202 -15.73489 -15.60226 -15.49255 -15.35438 -15.29542 -15.01301 -14.67648 -14.37552 -14.23556 -14.00396 -13.69700 -13.63230 -13.47254 -13.32107 -13.09120 -12.70050 -12.55029 -12.45287 -12.35320 -12.24530 -12.14096 -12.03932 -12.02915 -11.93920 -11.62272 -11.43881 -11.40550 -11.28586 -10.73104 -10.60644 -10.51737 -10.30925 -10.02809 -8.81291 -8.13331 -5.55972 1.31215 1.43946 1.54261 1.61601 1.85589 2.44301 2.79082 3.03274 3.13947 3.31373 3.52736 3.72915 3.78307 3.83143 3.89110 4.01684 4.02671 4.04289 4.15716 4.19295 4.28984 4.31288 4.45279 4.47254 4.48640 4.52847 4.55076 4.60331 4.62669 4.67722 4.77452 4.83135 4.84470 4.90807 4.93433 4.97802 5.01403 5.04595 5.07959 5.10923 5.15033 5.18721 5.22444 5.32243 5.34863 5.61592 5.92798 6.13338 6.16186 6.25491 6.60439 6.94730 7.28233 7.61839 8.04440 9.06888 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.008788 B = 0.004782 C = 0.003574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3185.291729 B = 5853.492972 C = 7832.618177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.420 6.420 3 C 0.071 3.929 4 C -0.120 4.120 5 C 0.204 3.796 6 N -0.707 5.707 7 C 0.520 3.480 8 O -0.552 6.552 9 C 0.079 3.921 10 H 0.108 0.892 11 C -0.147 4.147 12 C -0.117 4.117 13 C -0.156 4.156 14 C 0.053 3.947 15 O -0.387 6.387 16 C -0.135 4.135 17 C 0.159 3.841 18 N -0.614 5.614 19 C -0.253 4.253 20 H 0.038 0.962 21 C -0.037 4.037 22 N -0.966 5.966 23 Si 0.961 3.039 24 H -0.261 1.261 25 H -0.317 1.317 26 H -0.252 1.252 27 C 0.117 3.883 28 C -0.130 4.130 29 H 0.047 0.953 30 H 0.095 0.905 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.065 0.935 34 H 0.076 0.924 35 H 0.066 0.934 36 H 0.409 0.591 37 H 0.087 0.913 38 H 0.054 0.946 39 H 0.077 0.923 40 H 0.086 0.914 41 H 0.057 0.943 42 H 0.098 0.902 43 H 0.104 0.896 44 H 0.070 0.930 45 H 0.060 0.940 46 H 0.073 0.927 47 H 0.028 0.972 48 H 0.040 0.960 49 H 0.262 0.738 50 H 0.044 0.956 51 H 0.058 0.942 52 H 0.099 0.901 53 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.829 -6.608 -15.521 26.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.339 6.339 3 C -0.006 4.006 4 C -0.159 4.159 5 C 0.118 3.882 6 N -0.361 5.361 7 C 0.306 3.694 8 O -0.429 6.429 9 C 0.019 3.981 10 H 0.126 0.874 11 C -0.185 4.185 12 C -0.155 4.155 13 C -0.194 4.194 14 C -0.023 4.023 15 O -0.306 6.306 16 C -0.175 4.175 17 C 0.034 3.966 18 N -0.339 5.339 19 C -0.383 4.383 20 H 0.056 0.944 21 C -0.231 4.231 22 N -0.611 5.611 23 Si 0.789 3.211 24 H -0.187 1.187 25 H -0.247 1.247 26 H -0.176 1.176 27 C -0.007 4.007 28 C -0.169 4.169 29 H 0.066 0.934 30 H 0.113 0.887 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.095 0.905 35 H 0.085 0.915 36 H 0.246 0.754 37 H 0.106 0.894 38 H 0.073 0.927 39 H 0.096 0.904 40 H 0.105 0.895 41 H 0.076 0.924 42 H 0.116 0.884 43 H 0.122 0.878 44 H 0.088 0.912 45 H 0.079 0.921 46 H 0.092 0.908 47 H 0.046 0.954 48 H 0.059 0.941 49 H 0.070 0.930 50 H 0.062 0.938 51 H 0.076 0.924 52 H 0.117 0.883 53 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -19.112 -7.569 -15.522 25.758 hybrid contribution -0.085 1.393 0.270 1.421 sum -19.197 -6.176 -15.252 25.284 Atomic orbital electron populations 1.22916 0.79523 1.03729 1.00843 1.87847 1.21539 1.28959 1.95589 1.22497 0.92911 0.84315 1.00841 1.21784 0.94370 0.96474 1.03267 1.19983 0.92417 0.91258 0.84538 1.45977 1.58520 1.26096 1.05548 1.20565 0.80401 0.84053 0.84385 1.90650 1.40069 1.26539 1.85670 1.21938 1.00362 0.90538 0.85311 0.87429 1.22158 1.00718 0.94665 1.00963 1.21602 1.02047 0.98846 0.92971 1.22208 1.01893 0.95721 0.99529 1.22887 0.97158 0.96125 0.86098 1.88029 1.77318 1.47691 1.17591 1.22264 0.95078 0.98018 1.02120 1.20845 0.97027 0.89767 0.89005 1.44345 1.01614 1.55054 1.32908 1.18774 0.97087 0.98111 1.24292 0.94417 1.26186 1.01567 0.97190 0.98148 1.69942 1.42279 1.19031 1.29898 0.85744 0.79571 0.75685 0.80126 1.18666 1.24659 1.17570 1.21513 0.84036 0.96208 0.98976 1.22298 1.01950 0.96068 0.96573 0.93400 0.88693 0.92875 0.93031 0.91649 0.90506 0.91542 0.75395 0.89398 0.92710 0.90415 0.89532 0.92438 0.88359 0.87793 0.91170 0.92129 0.90827 0.95423 0.94099 0.92965 0.93849 0.92428 0.88280 0.90617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 113.37 1.25 1.68 16 2 O -0.42 -10.62 10.70 -148.98 -1.59 -12.21 16 3 C 0.07 1.63 5.44 71.98 0.39 2.02 16 4 C -0.12 -3.35 4.30 30.59 0.13 -3.21 16 5 C 0.20 5.86 0.35 3.63 0.00 5.86 16 6 N -0.71 -17.75 3.05 -422.80 -1.29 -19.04 16 7 C 0.52 14.57 6.29 87.66 0.55 15.12 16 8 O -0.55 -20.20 12.81 15.95 0.20 -19.99 16 9 C 0.08 1.72 3.06 29.88 0.09 1.81 16 10 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 11 C -0.15 -2.86 5.36 30.68 0.16 -2.69 16 12 C -0.12 -1.62 6.03 30.71 0.19 -1.43 16 13 C -0.16 -2.14 6.14 30.68 0.19 -1.95 16 14 C 0.05 0.84 6.84 72.01 0.49 1.33 16 15 O -0.39 -9.76 9.94 -130.00 -1.29 -11.05 16 16 C -0.14 -4.76 4.68 30.67 0.14 -4.62 16 17 C 0.16 6.42 6.26 86.36 0.54 6.96 16 18 N -0.61 -27.73 2.71 -699.05 -1.90 -29.62 16 19 C -0.25 -14.24 10.04 84.03 0.84 -13.40 16 20 H 0.04 2.41 8.06 -2.91 -0.02 2.39 16 21 C -0.04 -2.09 5.34 84.86 0.45 -1.64 16 22 N -0.97 -60.32 13.97 21.65 0.30 -60.02 16 23 Si 0.96 43.72 24.27 68.60 1.66 45.38 16 24 H -0.26 -10.70 6.48 99.48 0.65 -10.05 16 25 H -0.32 -15.04 7.11 99.48 0.71 -14.34 16 26 H -0.25 -10.49 6.60 99.48 0.66 -9.84 16 27 C 0.12 4.32 3.89 86.36 0.34 4.66 16 28 C -0.13 -3.74 4.76 30.67 0.15 -3.59 16 29 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.05 1.11 7.03 -2.39 -0.02 1.09 16 33 H 0.07 1.28 6.82 -2.39 -0.02 1.27 16 34 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.07 2.21 6.44 -2.39 -0.02 2.20 16 36 H 0.41 8.37 6.93 -92.71 -0.64 7.73 16 37 H 0.09 1.55 7.84 -2.38 -0.02 1.53 16 38 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 40 H 0.09 0.86 8.14 -2.38 -0.02 0.84 16 41 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.10 0.88 8.14 -2.38 -0.02 0.86 16 43 H 0.10 1.43 8.14 -2.39 -0.02 1.42 16 44 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 45 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 46 H 0.07 2.74 6.12 -2.39 -0.01 2.73 16 47 H 0.03 1.09 7.74 -2.38 -0.02 1.07 16 48 H 0.04 1.78 7.93 -2.38 -0.02 1.76 16 49 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 50 H 0.04 1.43 5.68 -2.39 -0.01 1.41 16 51 H 0.06 2.37 4.64 -2.39 -0.01 2.36 16 52 H 0.10 2.14 6.65 -2.39 -0.02 2.12 16 53 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 Total: -1.00 -75.46 391.59 2.15 -73.32 By element: Atomic # 1 Polarization: 26.19 SS G_CDS: 0.14 Total: 26.33 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: 5.91 Total: 6.91 kcal Atomic # 7 Polarization: -105.80 SS G_CDS: -2.89 Total: -108.68 kcal Atomic # 8 Polarization: -40.57 SS G_CDS: -2.68 Total: -43.26 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 1.66 Total: 45.38 kcal Total: -75.46 2.15 -73.32 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151063290.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.278 kcal (2) G-P(sol) polarization free energy of solvation -75.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds