Wall clock time and date at job start Sat Apr 11 2020 06:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42900 * 114.00090 * 2 1 4 4 C 1.52995 * 109.46812 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.46892 * 184.47188 * 4 3 2 6 6 N 1.46500 * 109.46019 * 302.90515 * 5 4 3 7 7 C 1.34774 * 120.00157 * 303.17710 * 6 5 4 8 8 O 1.21276 * 119.99811 * 354.78957 * 7 6 5 9 9 C 1.50696 * 119.99889 * 174.79035 * 7 6 5 10 10 H 1.09003 * 109.47562 * 55.00101 * 9 7 6 11 11 O 1.42904 * 109.47052 * 175.00100 * 9 7 6 12 12 C 1.42906 * 113.99601 * 269.99694 * 11 9 7 13 13 C 1.53000 * 109.47245 * 294.99693 * 9 7 6 14 14 C 1.52995 * 117.50017 * 248.62117 * 13 9 7 15 15 C 1.52995 * 60.00267 * 252.50974 * 14 13 9 16 16 C 1.53034 * 109.45023 * 62.87405 * 5 4 3 17 17 C 1.53195 * 109.31763 * 181.37634 * 16 5 4 18 18 N 1.46928 * 108.77416 * 305.36857 * 17 16 5 19 19 C 1.36935 * 120.62473 * 233.62291 * 18 17 16 20 20 H 1.08000 * 120.00263 * 31.61273 * 19 18 17 21 21 C 1.38810 * 119.99691 * 211.60282 * 19 18 17 22 22 N 1.31626 * 120.00191 * 10.62750 * 21 19 18 23 23 Si 1.86796 * 120.00151 * 190.63001 * 21 19 18 24 24 H 1.48499 * 109.47416 * 89.99833 * 23 21 19 25 25 H 1.48498 * 109.47484 * 210.00168 * 23 21 19 26 26 H 1.48502 * 109.46991 * 330.00444 * 23 21 19 27 27 C 1.46920 * 118.74019 * 53.60393 * 18 17 16 28 28 C 1.53048 * 109.46209 * 182.93613 * 5 4 3 29 29 H 1.09004 * 109.47257 * 300.00659 * 1 2 3 30 30 H 1.08997 * 109.46972 * 60.00277 * 1 2 3 31 31 H 1.08993 * 109.47422 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47612 * 59.99747 * 3 2 1 33 33 H 1.08998 * 109.46766 * 299.99718 * 3 2 1 34 34 H 1.08996 * 109.47661 * 64.47238 * 4 3 2 35 35 H 1.09001 * 109.47266 * 304.46573 * 4 3 2 36 36 H 0.96998 * 119.99725 * 122.89869 * 6 5 4 37 37 H 1.09002 * 109.47015 * 60.00177 * 12 11 9 38 38 H 1.08998 * 109.46852 * 180.02562 * 12 11 9 39 39 H 1.08998 * 109.47103 * 300.00115 * 12 11 9 40 40 H 1.09003 * 115.55003 * 34.33801 * 13 9 7 41 41 H 1.09002 * 117.50230 * 0.02562 * 14 13 9 42 42 H 1.09009 * 117.49533 * 145.01949 * 14 13 9 43 43 H 1.09002 * 117.49967 * 252.51117 * 15 14 13 44 44 H 1.08998 * 117.49414 * 107.48882 * 15 14 13 45 45 H 1.09006 * 109.50079 * 301.32977 * 16 5 4 46 46 H 1.09001 * 109.50311 * 61.42697 * 16 5 4 47 47 H 1.08994 * 109.59059 * 185.57125 * 17 16 5 48 48 H 1.09004 * 109.57804 * 65.15170 * 17 16 5 49 49 H 0.97000 * 119.99990 * 179.97438 * 22 21 19 50 50 H 1.08992 * 109.59113 * 186.60224 * 27 18 17 51 51 H 1.09004 * 109.70706 * 66.24660 * 27 18 17 52 52 H 1.09007 * 109.49267 * 298.58057 * 28 5 4 53 53 H 1.08995 * 109.49516 * 58.67109 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1845 0.0006 5 6 4.1574 2.5779 0.1131 6 7 3.6779 3.4168 -0.9880 7 6 3.8608 3.0234 -2.2640 8 8 4.5044 2.0239 -2.5040 9 6 3.2658 3.8255 -3.3925 10 1 3.5978 4.8610 -3.3169 11 8 3.6920 3.2786 -4.6420 12 6 4.9066 3.8437 -5.1397 13 6 1.7391 3.7719 -3.3066 14 6 0.9967 3.0013 -4.4002 15 6 0.9446 4.5301 -4.3719 16 6 3.7550 3.2094 1.4478 17 6 4.3509 4.6175 1.5423 18 7 5.8020 4.5322 1.3282 19 6 6.6741 5.0662 2.2390 20 1 6.4145 5.0872 3.2871 21 6 7.8918 5.5802 1.8151 22 7 8.1240 5.7479 0.5304 23 14 9.2011 6.0340 3.0678 24 1 10.0695 4.8571 3.3247 25 1 10.0249 7.1513 2.5403 26 1 8.5497 6.4543 4.3344 27 6 6.2995 3.8629 0.1186 28 6 5.6819 2.4633 0.0401 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.6887 1.8464 0.8899 33 1 1.6887 1.8463 -0.8900 34 1 3.8631 0.7142 -0.9264 35 1 3.8514 0.5762 0.8482 36 1 3.2251 4.2534 -0.7986 37 1 5.7087 3.6702 -4.4222 38 1 5.1619 3.3763 -6.0907 39 1 4.7755 4.9159 -5.2857 40 1 1.3258 3.7396 -2.2985 41 1 1.5958 2.5322 -5.1806 42 1 0.0947 2.4616 -4.1115 43 1 0.0083 4.9962 -4.0646 44 1 1.5095 5.0671 -5.1338 45 1 2.6684 3.2693 1.5090 46 1 4.1329 2.5988 2.2678 47 1 4.1510 5.0334 2.5297 48 1 3.9056 5.2546 0.7782 49 1 8.9749 6.1075 0.2342 50 1 7.3853 3.7809 0.1667 51 1 6.0152 4.4377 -0.7628 52 1 6.0416 1.8596 0.8734 53 1 5.9666 1.9921 -0.9006 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001151095650.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:51 Heat of formation + Delta-G solvation = -94.971653 kcal Electronic energy + Delta-G solvation = -32885.068226 eV Core-core repulsion = 28757.987687 eV Total energy + Delta-G solvation = -4127.080539 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.82246 -39.97649 -38.66200 -38.27595 -37.05017 -36.14755 -33.70161 -33.04508 -31.80290 -30.48670 -29.55108 -27.66525 -27.08872 -26.35240 -24.64429 -23.74979 -23.20674 -22.78951 -21.98909 -21.34211 -20.12287 -18.97658 -18.52828 -17.58159 -17.46759 -17.00816 -16.98108 -16.81498 -16.21134 -16.01647 -15.72882 -15.66339 -15.35918 -15.29235 -15.13426 -14.79943 -14.49219 -14.34447 -13.97963 -13.90329 -13.78826 -13.19372 -13.03018 -12.78661 -12.72807 -12.63806 -12.54190 -12.40573 -12.25420 -12.23836 -12.20210 -12.06055 -11.94213 -11.79825 -11.68479 -11.34873 -11.28004 -11.13542 -11.03804 -10.54507 -10.53894 -10.03020 -9.93204 -8.59759 -7.85249 -5.36187 1.45833 1.47808 1.55633 1.65955 2.08680 2.50757 2.73827 2.83333 2.96451 3.31109 3.56241 3.71471 3.74499 3.89922 3.92801 4.00889 4.11985 4.14217 4.23351 4.27159 4.37698 4.39238 4.45956 4.47569 4.53757 4.56465 4.56635 4.60109 4.69291 4.74818 4.78515 4.85414 4.86998 4.90175 4.99387 5.01846 5.06116 5.13224 5.17871 5.24457 5.27611 5.35867 5.38356 5.50488 5.64394 5.68094 5.77525 5.97957 6.28331 6.42291 6.67837 7.17206 7.35678 7.87821 8.40177 9.19745 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.010933 B = 0.004039 C = 0.003275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2560.354230 B = 6930.468813 C = 8546.548201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.420 6.420 3 C 0.075 3.925 4 C -0.121 4.121 5 C 0.204 3.796 6 N -0.702 5.702 7 C 0.495 3.505 8 O -0.561 6.561 9 C 0.104 3.896 10 H 0.097 0.903 11 O -0.370 6.370 12 C 0.027 3.973 13 C -0.167 4.167 14 C -0.166 4.166 15 C -0.149 4.149 16 C -0.127 4.127 17 C 0.142 3.858 18 N -0.606 5.606 19 C -0.260 4.260 20 H 0.068 0.932 21 C -0.048 4.048 22 N -0.935 5.935 23 Si 0.964 3.036 24 H -0.290 1.290 25 H -0.296 1.296 26 H -0.265 1.265 27 C 0.198 3.802 28 C -0.139 4.139 29 H 0.054 0.946 30 H 0.047 0.953 31 H 0.094 0.906 32 H 0.069 0.931 33 H 0.049 0.951 34 H 0.060 0.940 35 H 0.071 0.929 36 H 0.408 0.592 37 H 0.021 0.979 38 H 0.104 0.896 39 H 0.061 0.939 40 H 0.130 0.870 41 H 0.088 0.912 42 H 0.105 0.895 43 H 0.119 0.881 44 H 0.094 0.906 45 H 0.099 0.901 46 H 0.071 0.929 47 H 0.061 0.939 48 H 0.027 0.973 49 H 0.247 0.753 50 H 0.040 0.960 51 H -0.004 1.004 52 H 0.051 0.949 53 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.355 -3.361 -6.596 20.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.340 6.340 3 C -0.001 4.001 4 C -0.159 4.159 5 C 0.118 3.882 6 N -0.356 5.356 7 C 0.281 3.719 8 O -0.439 6.439 9 C 0.042 3.958 10 H 0.115 0.885 11 O -0.287 6.287 12 C -0.069 4.069 13 C -0.185 4.185 14 C -0.203 4.203 15 C -0.186 4.186 16 C -0.166 4.166 17 C 0.017 3.983 18 N -0.330 5.330 19 C -0.390 4.390 20 H 0.086 0.914 21 C -0.244 4.244 22 N -0.581 5.581 23 Si 0.793 3.207 24 H -0.218 1.218 25 H -0.223 1.223 26 H -0.189 1.189 27 C 0.072 3.928 28 C -0.179 4.179 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.112 0.888 32 H 0.087 0.913 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.245 0.755 37 H 0.040 0.960 38 H 0.122 0.878 39 H 0.080 0.920 40 H 0.148 0.852 41 H 0.107 0.893 42 H 0.123 0.877 43 H 0.137 0.863 44 H 0.113 0.887 45 H 0.117 0.883 46 H 0.090 0.910 47 H 0.080 0.920 48 H 0.045 0.955 49 H 0.056 0.944 50 H 0.058 0.942 51 H 0.014 0.986 52 H 0.070 0.930 53 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -18.767 -4.306 -6.932 20.465 hybrid contribution 1.500 0.932 0.584 1.860 sum -17.267 -3.374 -6.348 18.704 Atomic orbital electron populations 1.22914 0.79491 1.03691 1.00893 1.87845 1.21584 1.28980 1.95589 1.22474 0.92600 0.84261 1.00777 1.21780 0.94593 0.96578 1.02978 1.19968 0.92339 0.89222 0.86712 1.46023 1.59776 1.25047 1.04783 1.21583 0.79746 0.85774 0.84764 1.90629 1.40723 1.28037 1.84483 1.21530 0.94930 0.96355 0.82962 0.88548 1.87917 1.41317 1.64982 1.34481 1.22947 0.85510 0.98838 0.99589 1.22272 0.88809 1.09794 0.97671 1.22868 1.01566 0.95247 1.00595 1.23034 1.01702 0.94127 0.99726 1.22297 1.01495 0.97930 0.94872 1.21082 0.83609 0.94303 0.99349 1.44211 1.01144 1.64596 1.23033 1.19519 0.98503 1.31724 0.89291 0.91402 1.25869 1.01941 0.99218 0.97326 1.70148 1.23810 1.49503 1.14664 0.85314 0.79292 0.76957 0.79155 1.21763 1.22285 1.18935 1.20261 0.96927 0.88446 0.87147 1.22382 0.95874 0.99137 1.00477 0.92740 0.93415 0.88756 0.91326 0.93299 0.92099 0.90993 0.75509 0.95994 0.87767 0.92015 0.85192 0.89333 0.87680 0.86294 0.88708 0.88273 0.90990 0.92002 0.95471 0.94405 0.94180 0.98612 0.92999 0.92798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.01 113.37 1.25 1.70 16 2 O -0.42 -11.08 10.70 -148.98 -1.59 -12.68 16 3 C 0.07 1.85 5.50 71.98 0.40 2.24 16 4 C -0.12 -3.72 4.32 30.59 0.13 -3.59 16 5 C 0.20 6.52 0.35 3.63 0.00 6.52 16 6 N -0.70 -20.28 3.25 -422.81 -1.37 -21.65 16 7 C 0.49 15.85 6.29 87.66 0.55 16.40 16 8 O -0.56 -22.70 12.78 15.97 0.20 -22.50 16 9 C 0.10 2.65 2.87 29.85 0.09 2.73 16 10 H 0.10 2.26 7.79 -2.39 -0.02 2.24 16 11 O -0.37 -10.38 8.24 -129.99 -1.07 -11.45 16 12 C 0.03 0.68 10.81 113.37 1.23 1.91 16 13 C -0.17 -3.19 5.67 -10.79 -0.06 -3.25 16 14 C -0.17 -3.06 9.87 30.59 0.30 -2.76 16 15 C -0.15 -2.22 10.19 30.59 0.31 -1.91 16 16 C -0.13 -3.67 4.72 30.67 0.14 -3.52 16 17 C 0.14 5.12 6.24 86.36 0.54 5.66 16 18 N -0.61 -29.07 2.98 -699.12 -2.09 -31.16 16 19 C -0.26 -13.92 9.58 84.03 0.80 -13.11 16 20 H 0.07 3.51 7.85 -2.91 -0.02 3.49 16 21 C -0.05 -2.67 5.05 84.86 0.43 -2.24 16 22 N -0.94 -55.34 11.07 21.65 0.24 -55.10 16 23 Si 0.96 44.77 29.57 68.60 2.03 46.80 16 24 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 25 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 26 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 27 C 0.20 9.75 4.99 86.36 0.43 10.18 16 28 C -0.14 -5.77 4.71 30.67 0.14 -5.62 16 29 H 0.05 0.76 8.14 -2.38 -0.02 0.75 16 30 H 0.05 0.72 8.14 -2.39 -0.02 0.71 16 31 H 0.09 1.36 8.14 -2.39 -0.02 1.35 16 32 H 0.07 1.40 6.26 -2.39 -0.01 1.39 16 33 H 0.05 1.16 7.42 -2.39 -0.02 1.14 16 34 H 0.06 2.26 6.21 -2.39 -0.01 2.25 16 35 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.41 9.91 7.18 -92.71 -0.67 9.24 16 37 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 39 H 0.06 1.26 8.08 -2.39 -0.02 1.24 16 40 H 0.13 2.10 7.99 -2.39 -0.02 2.08 16 41 H 0.09 2.00 7.06 -2.39 -0.02 1.98 16 42 H 0.10 1.61 8.14 -2.38 -0.02 1.59 16 43 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 44 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 45 H 0.10 2.10 6.34 -2.38 -0.02 2.09 16 46 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 47 H 0.06 2.17 7.93 -2.39 -0.02 2.16 16 48 H 0.03 0.93 6.88 -2.38 -0.02 0.91 16 49 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 50 H 0.04 2.32 6.12 -2.39 -0.01 2.30 16 51 H 0.00 -0.22 7.74 -2.39 -0.02 -0.24 16 52 H 0.05 2.20 8.14 -2.38 -0.02 2.18 16 53 H 0.05 2.42 6.26 -2.39 -0.01 2.41 16 Total: -1.00 -71.87 407.11 3.26 -68.61 By element: Atomic # 1 Polarization: 27.55 SS G_CDS: 0.23 Total: 27.78 kcal Atomic # 6 Polarization: 4.66 SS G_CDS: 6.69 Total: 11.34 kcal Atomic # 7 Polarization: -104.69 SS G_CDS: -3.22 Total: -107.91 kcal Atomic # 8 Polarization: -44.16 SS G_CDS: -2.46 Total: -46.63 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -71.87 3.26 -68.61 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151095650.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.358 kcal (2) G-P(sol) polarization free energy of solvation -71.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds