Wall clock time and date at job start Sat Apr 11 2020 06:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42904 * 114.00298 * 2 1 4 4 C 1.53002 * 109.47192 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.46921 * 183.98921 * 4 3 2 6 6 N 1.46494 * 109.46099 * 305.41761 * 5 4 3 7 7 C 1.34776 * 120.00280 * 300.56295 * 6 5 4 8 8 O 1.21281 * 119.99286 * 355.07175 * 7 6 5 9 9 C 1.50696 * 120.00602 * 174.79714 * 7 6 5 10 10 H 1.08999 * 109.47047 * 305.27814 * 9 7 6 11 11 O 1.42894 * 109.47452 * 185.27386 * 9 7 6 12 12 C 1.42907 * 113.99986 * 93.59058 * 11 9 7 13 13 C 1.53001 * 109.46909 * 65.27524 * 9 7 6 14 14 C 1.53006 * 117.49729 * 252.60550 * 13 9 7 15 15 C 1.52997 * 60.00255 * 252.51038 * 14 13 9 16 16 C 1.53048 * 109.44728 * 65.38353 * 5 4 3 17 17 C 1.53196 * 109.30982 * 181.38127 * 16 5 4 18 18 N 1.46923 * 108.77209 * 305.36012 * 17 16 5 19 19 C 1.36939 * 120.63353 * 233.63264 * 18 17 16 20 20 H 1.07998 * 119.99626 * 31.32923 * 19 18 17 21 21 C 1.38810 * 120.00356 * 211.33228 * 19 18 17 22 22 N 1.31624 * 119.99991 * 11.02369 * 21 19 18 23 23 Si 1.86798 * 120.00127 * 191.02519 * 21 19 18 24 24 H 1.48505 * 109.47174 * 89.99930 * 23 21 19 25 25 H 1.48502 * 109.47089 * 210.00126 * 23 21 19 26 26 H 1.48503 * 109.47010 * 329.99900 * 23 21 19 27 27 C 1.46927 * 118.73993 * 53.61395 * 18 17 16 28 28 C 1.53037 * 109.45872 * 185.44081 * 5 4 3 29 29 H 1.08995 * 109.47324 * 180.02562 * 1 2 3 30 30 H 1.09009 * 109.46993 * 299.99877 * 1 2 3 31 31 H 1.08997 * 109.47407 * 59.99351 * 1 2 3 32 32 H 1.09004 * 109.46930 * 59.99829 * 3 2 1 33 33 H 1.08996 * 109.47244 * 300.00211 * 3 2 1 34 34 H 1.08996 * 109.47194 * 63.98863 * 4 3 2 35 35 H 1.08993 * 109.46878 * 303.98955 * 4 3 2 36 36 H 0.97005 * 120.00057 * 120.56201 * 6 5 4 37 37 H 1.09000 * 109.46845 * 55.15981 * 12 11 9 38 38 H 1.08999 * 109.47199 * 175.15373 * 12 11 9 39 39 H 1.08994 * 109.47004 * 295.16015 * 12 11 9 40 40 H 1.09000 * 115.55458 * 38.31550 * 13 9 7 41 41 H 1.08992 * 117.49967 * 0.02562 * 14 13 9 42 42 H 1.09005 * 117.49649 * 145.02198 * 14 13 9 43 43 H 1.08995 * 117.50190 * 252.51529 * 15 14 13 44 44 H 1.09003 * 117.51703 * 107.47770 * 15 14 13 45 45 H 1.09003 * 109.49599 * 301.32273 * 16 5 4 46 46 H 1.08994 * 109.49782 * 61.42819 * 16 5 4 47 47 H 1.09002 * 109.58334 * 185.57860 * 17 16 5 48 48 H 1.08993 * 109.59251 * 65.14711 * 17 16 5 49 49 H 0.96996 * 120.00125 * 179.97438 * 22 21 19 50 50 H 1.09005 * 109.59005 * 186.60072 * 27 18 17 51 51 H 1.09001 * 109.70479 * 66.24549 * 27 18 17 52 52 H 1.09000 * 109.49886 * 298.58032 * 28 5 4 53 53 H 1.08997 * 109.49638 * 58.67962 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1576 2.5788 0.0997 6 7 3.6304 3.4268 -0.9723 7 6 3.8078 3.0727 -2.2605 8 8 4.4796 2.1011 -2.5353 9 6 3.1663 3.8804 -3.3592 10 1 2.0937 3.9517 -3.1789 11 8 3.3965 3.2416 -4.6166 12 6 2.3464 2.3613 -5.0221 13 6 3.7742 5.2843 -3.3816 14 6 2.9065 6.4380 -2.8745 15 6 3.1873 6.2926 -4.3715 16 6 3.8089 3.1960 1.4562 17 6 4.4041 4.6051 1.5396 18 7 5.8453 4.5266 1.2650 19 6 6.7529 5.0545 2.1441 20 1 6.5349 5.0686 3.2018 21 6 7.9531 5.5714 1.6759 22 7 8.1315 5.7551 0.3848 23 14 9.3150 6.0064 2.8781 24 1 10.1904 4.8245 3.0833 25 1 10.1187 7.1287 2.3306 26 1 8.7185 6.4119 4.1762 27 6 6.2943 3.8707 0.0293 28 6 5.6779 2.4698 -0.0373 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.6886 1.8464 0.8900 33 1 1.6887 1.8464 -0.8899 34 1 3.8617 0.7068 -0.9244 35 1 3.8526 0.5831 0.8512 36 1 3.1537 4.2432 -0.7549 37 1 1.4005 2.9029 -5.0288 38 1 2.5555 1.9830 -6.0228 39 1 2.2822 1.5266 -4.3242 40 1 4.8453 5.3360 -3.1861 41 1 1.9028 6.1968 -2.5246 42 1 3.4067 7.2489 -2.3451 43 1 3.8722 7.0078 -4.8268 44 1 2.3684 5.9556 -5.0071 45 1 2.7255 3.2518 1.5627 46 1 4.2221 2.5786 2.2537 47 1 4.2441 5.0107 2.5386 48 1 3.9259 5.2482 0.8009 49 1 8.9699 6.1166 0.0577 50 1 7.3815 3.7918 0.0317 51 1 5.9722 4.4531 -0.8339 52 1 6.0735 1.8593 0.7744 53 1 5.9249 2.0088 -0.9936 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001151095651.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:55 Heat of formation + Delta-G solvation = -95.304790 kcal Electronic energy + Delta-G solvation = -32961.831196 eV Core-core repulsion = 28834.736211 eV Total energy + Delta-G solvation = -4127.094984 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.80935 -39.90688 -38.66424 -38.25586 -37.28770 -36.15849 -33.66568 -32.99645 -31.77780 -30.48369 -29.55448 -27.65910 -26.96295 -26.34539 -24.61710 -23.75357 -23.22498 -22.79605 -22.03661 -21.41222 -20.15934 -18.94115 -18.60953 -17.66468 -17.39326 -17.05303 -16.81275 -16.70773 -16.36536 -15.93564 -15.79506 -15.60348 -15.47069 -15.27672 -15.09779 -14.78669 -14.52823 -14.30182 -14.04343 -13.82929 -13.77315 -13.18730 -13.02989 -12.78633 -12.72341 -12.63515 -12.57860 -12.40136 -12.27844 -12.19705 -12.15082 -12.06747 -11.93818 -11.78526 -11.67353 -11.40449 -11.28731 -11.18860 -11.03578 -10.56252 -10.53245 -10.06278 -9.92840 -8.58566 -7.83669 -5.34458 1.45587 1.47619 1.55525 1.63602 2.11998 2.51046 2.52660 2.81364 3.23396 3.32354 3.56295 3.71970 3.75839 3.83095 3.85648 3.97890 4.08537 4.12633 4.17343 4.23118 4.36212 4.38583 4.45113 4.53035 4.53883 4.55307 4.59068 4.60959 4.71039 4.76033 4.79571 4.82704 4.85013 4.90326 4.99393 5.02896 5.06984 5.13793 5.17442 5.18786 5.26787 5.27950 5.37794 5.52202 5.65531 5.69073 5.79535 6.06109 6.26406 6.42945 6.69340 7.18136 7.36416 7.89420 8.41843 9.21057 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.009706 B = 0.004441 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2884.077816 B = 6302.710617 C = 8161.548594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.420 6.420 3 C 0.076 3.924 4 C -0.119 4.119 5 C 0.202 3.798 6 N -0.699 5.699 7 C 0.492 3.508 8 O -0.563 6.563 9 C 0.116 3.884 10 H 0.117 0.883 11 O -0.381 6.381 12 C 0.025 3.975 13 C -0.180 4.180 14 C -0.151 4.151 15 C -0.149 4.149 16 C -0.127 4.127 17 C 0.142 3.858 18 N -0.605 5.605 19 C -0.259 4.259 20 H 0.069 0.931 21 C -0.049 4.049 22 N -0.935 5.935 23 Si 0.963 3.037 24 H -0.291 1.291 25 H -0.297 1.297 26 H -0.264 1.264 27 C 0.199 3.801 28 C -0.140 4.140 29 H 0.094 0.906 30 H 0.054 0.946 31 H 0.048 0.952 32 H 0.070 0.930 33 H 0.047 0.953 34 H 0.057 0.943 35 H 0.074 0.926 36 H 0.408 0.592 37 H 0.070 0.930 38 H 0.099 0.901 39 H 0.030 0.970 40 H 0.073 0.927 41 H 0.126 0.874 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.114 0.886 45 H 0.100 0.900 46 H 0.072 0.928 47 H 0.061 0.939 48 H 0.028 0.972 49 H 0.246 0.754 50 H 0.037 0.963 51 H -0.005 1.005 52 H 0.051 0.949 53 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.536 -3.504 -5.409 22.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.340 6.340 3 C 0.000 4.000 4 C -0.158 4.158 5 C 0.116 3.884 6 N -0.352 5.352 7 C 0.279 3.721 8 O -0.441 6.441 9 C 0.055 3.945 10 H 0.135 0.865 11 O -0.299 6.299 12 C -0.071 4.071 13 C -0.199 4.199 14 C -0.188 4.188 15 C -0.186 4.186 16 C -0.166 4.166 17 C 0.017 3.983 18 N -0.328 5.328 19 C -0.389 4.389 20 H 0.087 0.913 21 C -0.244 4.244 22 N -0.581 5.581 23 Si 0.792 3.208 24 H -0.218 1.218 25 H -0.224 1.224 26 H -0.188 1.188 27 C 0.073 3.927 28 C -0.180 4.180 29 H 0.113 0.887 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.088 0.912 33 H 0.065 0.935 34 H 0.076 0.924 35 H 0.093 0.907 36 H 0.245 0.755 37 H 0.089 0.911 38 H 0.117 0.883 39 H 0.049 0.951 40 H 0.092 0.908 41 H 0.145 0.855 42 H 0.113 0.887 43 H 0.113 0.887 44 H 0.133 0.867 45 H 0.118 0.882 46 H 0.090 0.910 47 H 0.080 0.920 48 H 0.045 0.955 49 H 0.055 0.945 50 H 0.055 0.945 51 H 0.013 0.987 52 H 0.069 0.931 53 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -20.678 -4.262 -5.781 21.890 hybrid contribution 1.260 0.610 0.506 1.489 sum -19.418 -3.653 -5.276 20.450 Atomic orbital electron populations 1.22924 0.79435 1.03740 1.00941 1.87849 1.21622 1.28914 1.95595 1.22451 0.92524 0.84258 1.00816 1.21772 0.94616 0.96488 1.02917 1.19991 0.91948 0.89151 0.87316 1.45980 1.57706 1.26836 1.04708 1.21639 0.80745 0.85116 0.84614 1.90631 1.39809 1.30068 1.83599 1.21542 0.99967 0.89922 0.83047 0.86519 1.88000 1.46316 1.61012 1.34528 1.23040 0.90283 0.92808 1.00964 1.21960 0.98740 0.88998 1.10226 1.23172 1.00812 0.97724 0.97078 1.22931 1.03136 0.99864 0.92660 1.22297 1.01727 0.98023 0.94535 1.21077 0.83792 0.94312 0.99138 1.44197 1.01271 1.65266 1.22114 1.19519 0.98290 1.31732 0.89393 0.91343 1.25868 1.02159 0.99266 0.97136 1.70165 1.25012 1.49279 1.13627 0.85326 0.79478 0.76881 0.79103 1.21822 1.22384 1.18819 1.20237 0.97002 0.88598 0.86832 1.22396 0.95933 0.99161 1.00545 0.88705 0.92725 0.93364 0.91172 0.93471 0.92379 0.90750 0.75491 0.91127 0.88280 0.95091 0.90836 0.85545 0.88655 0.88654 0.86736 0.88178 0.90955 0.92015 0.95453 0.94512 0.94454 0.98658 0.93064 0.92705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 113.37 1.25 1.66 16 2 O -0.42 -10.54 10.70 -148.98 -1.59 -12.14 16 3 C 0.08 1.78 5.50 71.98 0.40 2.18 16 4 C -0.12 -3.60 4.32 30.60 0.13 -3.47 16 5 C 0.20 6.51 0.35 3.63 0.00 6.51 16 6 N -0.70 -20.36 3.21 -422.81 -1.36 -21.72 16 7 C 0.49 16.08 6.30 87.66 0.55 16.63 16 8 O -0.56 -23.34 12.81 15.96 0.20 -23.13 16 9 C 0.12 2.99 2.70 29.85 0.08 3.07 16 10 H 0.12 2.04 7.46 -2.39 -0.02 2.02 16 11 O -0.38 -10.93 9.85 -129.99 -1.28 -12.21 16 12 C 0.02 0.50 10.88 113.37 1.23 1.74 16 13 C -0.18 -4.74 5.30 -10.79 -0.06 -4.80 16 14 C -0.15 -2.86 10.18 30.60 0.31 -2.55 16 15 C -0.15 -2.93 10.21 30.60 0.31 -2.62 16 16 C -0.13 -3.67 4.76 30.68 0.15 -3.52 16 17 C 0.14 5.17 6.24 86.36 0.54 5.71 16 18 N -0.60 -29.36 2.99 -699.09 -2.09 -31.45 16 19 C -0.26 -14.00 9.58 84.03 0.80 -13.19 16 20 H 0.07 3.56 7.85 -2.91 -0.02 3.54 16 21 C -0.05 -2.75 5.04 84.86 0.43 -2.32 16 22 N -0.93 -56.37 11.07 21.65 0.24 -56.13 16 23 Si 0.96 45.37 29.57 68.60 2.03 47.40 16 24 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 25 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 26 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 27 C 0.20 10.06 5.00 86.36 0.43 10.49 16 28 C -0.14 -5.97 4.67 30.67 0.14 -5.83 16 29 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 31 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.07 1.36 6.37 -2.38 -0.02 1.35 16 33 H 0.05 1.05 7.36 -2.39 -0.02 1.04 16 34 H 0.06 2.11 6.46 -2.39 -0.02 2.09 16 35 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.41 9.98 7.24 -92.70 -0.67 9.31 16 37 H 0.07 0.95 7.98 -2.39 -0.02 0.93 16 38 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.07 2.61 8.13 -2.39 -0.02 2.59 16 41 H 0.13 1.59 8.07 -2.39 -0.02 1.57 16 42 H 0.09 2.02 8.14 -2.38 -0.02 2.00 16 43 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 44 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 45 H 0.10 2.09 6.44 -2.39 -0.02 2.07 16 46 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 47 H 0.06 2.18 7.93 -2.39 -0.02 2.16 16 48 H 0.03 0.94 6.93 -2.39 -0.02 0.93 16 49 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 50 H 0.04 2.22 6.11 -2.38 -0.01 2.20 16 51 H 0.00 -0.25 7.74 -2.39 -0.02 -0.27 16 52 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 53 H 0.05 2.55 6.09 -2.39 -0.01 2.53 16 Total: -1.00 -75.14 409.59 3.08 -72.07 By element: Atomic # 1 Polarization: 27.41 SS G_CDS: 0.22 Total: 27.63 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: 6.70 Total: 9.68 kcal Atomic # 7 Polarization: -106.09 SS G_CDS: -3.20 Total: -109.30 kcal Atomic # 8 Polarization: -44.81 SS G_CDS: -2.67 Total: -47.48 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -75.14 3.08 -72.07 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151095651.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.238 kcal (2) G-P(sol) polarization free energy of solvation -75.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds