Wall clock time and date at job start Sat Apr 11 2020 06:11:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42895 * 114.00217 * 2 1 4 4 C 1.53000 * 109.47127 * 179.97438 * 3 2 1 5 5 C 1.53006 * 109.47224 * 184.34528 * 4 3 2 6 6 N 1.46505 * 109.44893 * 302.54779 * 5 4 3 7 7 C 1.34773 * 120.00099 * 296.76934 * 6 5 4 8 8 O 1.21283 * 119.99977 * 5.14992 * 7 6 5 9 9 C 1.50701 * 119.99857 * 185.14855 * 7 6 5 10 10 C 1.53780 * 113.61323 * 277.49807 * 9 7 6 11 11 C 1.53786 * 87.07711 * 220.02050 * 10 9 7 12 12 O 1.42900 * 113.69031 * 139.99678 * 11 10 9 13 13 C 1.42897 * 114.00112 * 112.46228 * 12 11 10 14 14 C 1.53778 * 87.08378 * 25.43401 * 11 10 9 15 15 C 1.53035 * 109.45587 * 62.51346 * 5 4 3 16 16 C 1.53193 * 109.31258 * 181.38667 * 15 5 4 17 17 N 1.46929 * 108.77280 * 305.36481 * 16 15 5 18 18 C 1.36935 * 120.63303 * 233.58140 * 17 16 15 19 19 H 1.08001 * 119.99376 * 31.75232 * 18 17 16 20 20 C 1.38810 * 120.00396 * 212.02836 * 18 17 16 21 21 N 1.31624 * 119.99807 * 10.47621 * 20 18 17 22 22 Si 1.86804 * 119.99995 * 190.48233 * 20 18 17 23 23 H 1.48496 * 109.47161 * 89.99741 * 22 20 18 24 24 H 1.48503 * 109.46801 * 209.99550 * 22 20 18 25 25 H 1.48494 * 109.46969 * 329.99440 * 22 20 18 26 26 C 1.46924 * 118.73986 * 53.85950 * 17 16 15 27 27 C 1.53039 * 109.45960 * 182.58111 * 5 4 3 28 28 H 1.09001 * 109.47173 * 300.00582 * 1 2 3 29 29 H 1.09002 * 109.46489 * 60.00302 * 1 2 3 30 30 H 1.08999 * 109.47262 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47430 * 59.99855 * 3 2 1 32 32 H 1.08997 * 109.47170 * 300.00055 * 3 2 1 33 33 H 1.09008 * 109.46649 * 64.35020 * 4 3 2 34 34 H 1.08991 * 109.47323 * 304.34661 * 4 3 2 35 35 H 0.96996 * 119.99409 * 116.76649 * 6 5 4 36 36 H 1.09003 * 112.84570 * 48.80473 * 9 7 6 37 37 H 1.09002 * 113.61606 * 334.56239 * 10 9 7 38 38 H 1.08998 * 113.61447 * 105.47626 * 10 9 7 39 39 H 1.09002 * 113.61281 * 270.88088 * 11 10 9 40 40 H 1.09004 * 109.46885 * 179.97438 * 13 12 11 41 41 H 1.08996 * 109.47185 * 299.99807 * 13 12 11 42 42 H 1.09004 * 109.47205 * 59.99767 * 13 12 11 43 43 H 1.09001 * 113.61110 * 220.02501 * 14 11 10 44 44 H 1.08993 * 113.61452 * 89.11301 * 14 11 10 45 45 H 1.09002 * 109.49937 * 61.43429 * 15 5 4 46 46 H 1.08999 * 109.50031 * 301.33628 * 15 5 4 47 47 H 1.09004 * 109.59015 * 185.58259 * 16 15 5 48 48 H 1.08996 * 109.58861 * 65.14933 * 16 15 5 49 49 H 0.96995 * 119.99653 * 180.02562 * 21 20 18 50 50 H 1.09008 * 109.58242 * 65.92659 * 26 17 16 51 51 H 1.08997 * 109.59190 * 186.34978 * 26 17 16 52 52 H 1.09001 * 109.49644 * 298.56705 * 27 5 4 53 53 H 1.09004 * 109.49544 * 58.63473 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 6 4.1576 2.5782 0.1099 6 7 3.6843 3.4118 -0.9979 7 6 3.9861 3.0789 -2.2685 8 8 4.5686 2.0409 -2.5014 9 6 3.5997 3.9964 -3.3999 10 6 2.1420 3.8274 -3.8596 11 6 2.6598 3.9896 -5.2986 12 8 2.0321 3.1133 -6.2368 13 6 1.2092 3.7812 -7.1954 14 6 4.0148 3.4742 -4.7856 15 6 3.7482 3.2163 1.4393 16 6 4.3441 4.6246 1.5301 17 7 5.7963 4.5377 1.3243 18 6 6.6638 5.0765 2.2366 19 1 6.3995 5.1015 3.2835 20 6 7.8802 5.5957 1.8153 21 7 8.1159 5.7604 0.5308 22 14 9.1827 6.0604 3.0711 23 1 10.0564 4.8890 3.3348 24 1 10.0024 7.1804 2.5427 25 1 8.5247 6.4815 4.3340 26 6 6.3001 3.8671 0.1180 27 6 5.6822 2.4624 0.0458 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 1.6887 1.8464 0.8900 32 1 1.6887 1.8463 -0.8899 33 1 3.8629 0.7122 -0.9256 34 1 3.8516 0.5780 0.8493 35 1 3.1537 4.2034 -0.8169 36 1 3.8851 5.0330 -3.2204 37 1 1.7306 2.8395 -3.6525 38 1 1.4862 4.6363 -3.5379 39 1 2.6867 5.0248 -5.6389 40 1 0.7697 3.0474 -7.8710 41 1 0.4156 4.3215 -6.6793 42 1 1.8149 4.4842 -7.7673 43 1 4.8706 3.9981 -5.2112 44 1 4.1152 2.3899 -4.8314 45 1 4.1213 2.6095 2.2643 46 1 2.6613 3.2770 1.4943 47 1 4.1392 5.0454 2.5145 48 1 3.9034 5.2582 0.7605 49 1 8.9661 6.1229 0.2364 50 1 6.0154 4.4403 -0.7645 51 1 7.3859 3.7880 0.1702 52 1 6.0371 1.8627 0.8840 53 1 5.9718 1.9860 -0.8909 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001151168431.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:03 Heat of formation + Delta-G solvation = -105.057336 kcal Electronic energy + Delta-G solvation = -32204.893882 eV Core-core repulsion = 28077.375995 eV Total energy + Delta-G solvation = -4127.517887 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.85110 -40.30822 -38.79506 -38.50694 -36.72361 -36.12047 -33.61586 -32.90012 -31.74712 -30.39048 -28.17022 -27.62459 -26.68834 -26.55666 -26.12903 -24.63091 -23.69556 -22.42633 -21.84687 -20.48287 -20.13008 -18.87994 -18.58293 -17.46410 -17.15228 -16.92697 -16.82068 -16.73798 -16.25065 -16.07039 -15.80199 -15.61201 -15.38811 -15.32721 -15.04771 -14.77159 -14.52809 -14.22869 -13.98456 -13.80443 -13.45369 -13.21184 -13.09545 -12.97076 -12.78315 -12.73340 -12.67006 -12.61407 -12.25281 -12.18389 -12.09059 -12.06900 -11.92552 -11.81049 -11.77275 -11.66125 -11.27525 -11.21786 -10.59784 -10.53495 -10.44739 -10.28258 -9.89193 -8.58153 -7.84067 -5.35201 1.46191 1.48193 1.56022 1.74406 2.29459 2.51524 2.82708 2.97180 3.31887 3.46042 3.58306 3.72665 3.73313 3.78836 3.90369 4.00285 4.13475 4.17548 4.21898 4.37328 4.42060 4.45836 4.54550 4.55082 4.58261 4.59968 4.61250 4.71111 4.75165 4.77659 4.80833 4.84068 4.88958 4.92651 4.97851 5.01000 5.07206 5.09686 5.13881 5.19033 5.23982 5.32665 5.37724 5.52272 5.65956 5.71776 5.80471 6.27115 6.35220 6.43484 6.74546 7.18380 7.43053 7.89039 8.41538 9.20635 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.010151 B = 0.003647 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2757.685527 B = 7674.820529 C = 9765.438265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.421 6.421 3 C 0.075 3.925 4 C -0.120 4.120 5 C 0.202 3.798 6 N -0.704 5.704 7 C 0.524 3.476 8 O -0.573 6.573 9 C -0.136 4.136 10 C -0.124 4.124 11 C 0.070 3.930 12 O -0.403 6.403 13 C 0.023 3.977 14 C -0.123 4.123 15 C -0.127 4.127 16 C 0.143 3.857 17 N -0.607 5.607 18 C -0.260 4.260 19 H 0.067 0.933 20 C -0.049 4.049 21 N -0.934 5.934 22 Si 0.964 3.036 23 H -0.290 1.290 24 H -0.296 1.296 25 H -0.265 1.265 26 C 0.198 3.802 27 C -0.140 4.140 28 H 0.054 0.946 29 H 0.046 0.954 30 H 0.095 0.905 31 H 0.068 0.932 32 H 0.047 0.953 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.409 0.591 36 H 0.131 0.869 37 H 0.077 0.923 38 H 0.106 0.894 39 H 0.117 0.883 40 H 0.091 0.909 41 H 0.054 0.946 42 H 0.052 0.948 43 H 0.079 0.921 44 H 0.074 0.926 45 H 0.070 0.930 46 H 0.097 0.903 47 H 0.059 0.941 48 H 0.028 0.972 49 H 0.247 0.753 50 H 0.000 1.000 51 H 0.040 0.960 52 H 0.051 0.949 53 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.850 -2.498 -8.579 21.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.341 6.341 3 C -0.001 4.001 4 C -0.159 4.159 5 C 0.116 3.884 6 N -0.355 5.355 7 C 0.312 3.688 8 O -0.452 6.452 9 C -0.158 4.158 10 C -0.162 4.162 11 C 0.012 3.988 12 O -0.322 6.322 13 C -0.073 4.073 14 C -0.161 4.161 15 C -0.166 4.166 16 C 0.018 3.982 17 N -0.331 5.331 18 C -0.390 4.390 19 H 0.085 0.915 20 C -0.245 4.245 21 N -0.580 5.580 22 Si 0.793 3.207 23 H -0.218 1.218 24 H -0.222 1.222 25 H -0.190 1.190 26 C 0.072 3.928 27 C -0.180 4.180 28 H 0.073 0.927 29 H 0.064 0.936 30 H 0.113 0.887 31 H 0.086 0.914 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.245 0.755 36 H 0.149 0.851 37 H 0.095 0.905 38 H 0.125 0.875 39 H 0.135 0.865 40 H 0.110 0.890 41 H 0.073 0.927 42 H 0.071 0.929 43 H 0.098 0.902 44 H 0.093 0.907 45 H 0.089 0.911 46 H 0.116 0.884 47 H 0.078 0.922 48 H 0.046 0.954 49 H 0.056 0.944 50 H 0.018 0.982 51 H 0.058 0.942 52 H 0.070 0.930 53 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -19.170 -3.503 -8.776 21.372 hybrid contribution 1.073 0.960 0.486 1.519 sum -18.097 -2.544 -8.290 20.067 Atomic orbital electron populations 1.22915 0.79516 1.03709 1.00849 1.87843 1.21567 1.29055 1.95588 1.22468 0.92747 0.84180 1.00700 1.21807 0.94419 0.96734 1.02895 1.19957 0.92475 0.89247 0.86696 1.45973 1.54944 1.29651 1.04968 1.20700 0.77633 0.86241 0.84226 1.90617 1.42921 1.27026 1.84663 1.22565 1.00076 1.00487 0.92628 1.23332 0.93687 1.03589 0.95604 1.23729 0.92255 0.94777 0.87994 1.87950 1.64472 1.35152 1.44667 1.22989 0.94118 0.98558 0.91664 1.23093 0.97758 1.01988 0.93234 1.22287 1.01342 0.97922 0.95027 1.21066 0.83638 0.94274 0.99248 1.44238 1.01122 1.64415 1.23294 1.19504 0.98718 1.31515 0.89282 0.91509 1.25889 1.01993 0.99226 0.97372 1.70144 1.23823 1.49403 1.14648 0.85310 0.79276 0.76977 0.79128 1.21766 1.22240 1.19002 1.20373 0.96829 0.88356 0.87246 1.22440 0.95711 0.99204 1.00618 0.92714 0.93556 0.88684 0.91391 0.93430 0.92040 0.91181 0.75477 0.85137 0.90484 0.87535 0.86535 0.89035 0.92697 0.92945 0.90218 0.90699 0.91131 0.88433 0.92212 0.95412 0.94382 0.98240 0.94195 0.93025 0.92546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 113.37 1.25 1.71 16 2 O -0.42 -11.32 10.70 -148.98 -1.59 -12.92 16 3 C 0.08 1.89 5.50 71.98 0.40 2.29 16 4 C -0.12 -3.72 4.43 30.60 0.14 -3.58 16 5 C 0.20 6.52 0.35 3.63 0.00 6.52 16 6 N -0.70 -20.19 3.27 -422.79 -1.38 -21.58 16 7 C 0.52 16.50 6.66 87.66 0.58 17.09 16 8 O -0.57 -22.69 12.17 -3.04 -0.04 -22.73 16 9 C -0.14 -3.23 4.15 -11.01 -0.05 -3.28 16 10 C -0.12 -2.28 7.46 31.12 0.23 -2.05 16 11 C 0.07 1.33 4.31 31.12 0.13 1.46 16 12 O -0.40 -8.74 10.72 -148.98 -1.60 -10.34 16 13 C 0.02 0.30 10.85 113.37 1.23 1.53 16 14 C -0.12 -3.06 7.24 31.12 0.23 -2.84 16 15 C -0.13 -3.72 4.69 30.67 0.14 -3.57 16 16 C 0.14 5.22 6.24 86.36 0.54 5.76 16 17 N -0.61 -29.28 2.98 -698.25 -2.08 -31.36 16 18 C -0.26 -13.97 9.58 84.03 0.80 -13.17 16 19 H 0.07 3.48 7.85 -2.91 -0.02 3.46 16 20 C -0.05 -2.74 5.05 84.86 0.43 -2.32 16 21 N -0.93 -55.36 11.07 21.65 0.24 -55.12 16 22 Si 0.96 44.94 29.57 68.60 2.03 46.97 16 23 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 24 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 25 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 26 C 0.20 9.75 5.02 86.51 0.43 10.18 16 27 C -0.14 -5.82 4.63 30.82 0.14 -5.68 16 28 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.07 1.43 6.25 -2.39 -0.01 1.42 16 32 H 0.05 1.16 7.68 -2.39 -0.02 1.14 16 33 H 0.06 2.28 6.30 -2.38 -0.02 2.26 16 34 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.41 9.64 7.38 -92.71 -0.68 8.96 16 36 H 0.13 2.72 8.14 -2.39 -0.02 2.70 16 37 H 0.08 1.69 8.09 -2.39 -0.02 1.67 16 38 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.12 1.57 7.87 -2.39 -0.02 1.55 16 40 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 41 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 42 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 43 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.07 2.33 7.43 -2.39 -0.02 2.31 16 45 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 46 H 0.10 2.12 6.33 -2.39 -0.02 2.11 16 47 H 0.06 2.13 7.93 -2.38 -0.02 2.11 16 48 H 0.03 0.96 7.00 -2.39 -0.02 0.94 16 49 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 50 H 0.00 -0.02 7.64 -2.38 -0.02 -0.04 16 51 H 0.04 2.31 6.13 -2.39 -0.01 2.30 16 52 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 53 H 0.06 2.53 6.16 -2.39 -0.01 2.51 16 Total: -1.00 -72.74 405.01 2.42 -70.32 By element: Atomic # 1 Polarization: 26.49 SS G_CDS: 0.21 Total: 26.69 kcal Atomic # 6 Polarization: 3.41 SS G_CDS: 6.63 Total: 10.05 kcal Atomic # 7 Polarization: -104.84 SS G_CDS: -3.22 Total: -108.06 kcal Atomic # 8 Polarization: -42.75 SS G_CDS: -3.23 Total: -45.98 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -72.74 2.42 -70.32 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151168431.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.733 kcal (2) G-P(sol) polarization free energy of solvation -72.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds