Wall clock time and date at job start Sat Apr 11 2020 06:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36940 * 119.99783 * 2 1 4 4 H 1.08009 * 119.99526 * 190.96373 * 3 2 1 5 5 C 1.38804 * 120.00162 * 10.96808 * 3 2 1 6 6 N 1.31615 * 120.00366 * 12.57335 * 5 3 2 7 7 Si 1.86804 * 119.99979 * 192.57366 * 5 3 2 8 8 H 1.48504 * 109.47111 * 0.02562 * 7 5 3 9 9 H 1.48507 * 109.47078 * 119.99918 * 7 5 3 10 10 H 1.48492 * 109.47453 * 239.99762 * 7 5 3 11 11 C 1.46501 * 120.00009 * 180.02562 * 2 1 3 12 12 C 1.52991 * 109.47185 * 84.70803 * 11 2 1 13 13 H 1.09007 * 109.58644 * 301.52312 * 12 11 2 14 14 C 1.53189 * 109.70987 * 61.87775 * 12 11 2 15 15 C 1.53034 * 109.31717 * 174.49205 * 14 12 11 16 16 C 1.53042 * 109.54056 * 298.63635 * 15 14 12 17 17 C 1.52770 * 109.38123 * 61.23810 * 16 15 14 18 18 N 1.46926 * 109.00737 * 305.59184 * 17 16 15 19 19 C 1.34782 * 120.62655 * 233.58364 * 18 17 16 20 20 O 1.21279 * 119.99522 * 174.73149 * 19 18 17 21 21 C 1.50698 * 120.00008 * 354.73367 * 19 18 17 22 22 O 1.42903 * 109.46931 * 180.02562 * 21 19 18 23 23 C 1.42899 * 114.00154 * 179.97438 * 22 21 19 24 24 C 1.52999 * 109.47319 * 180.02562 * 23 22 21 25 25 H 1.08997 * 110.80028 * 302.82392 * 24 23 22 26 26 C 1.54805 * 110.90783 * 179.16056 * 24 23 22 27 27 C 1.54100 * 104.18885 * 220.91980 * 26 24 23 28 28 O 1.43894 * 107.37436 * 358.09946 * 27 26 24 29 29 C 1.44382 * 106.89340 * 26.27335 * 28 27 26 30 30 H 1.09000 * 109.47102 * 174.73034 * 1 2 3 31 31 H 1.09000 * 109.47382 * 294.73035 * 1 2 3 32 32 H 1.09003 * 109.46821 * 54.72918 * 1 2 3 33 33 H 0.97000 * 120.00321 * 180.02562 * 6 5 3 34 34 H 1.08998 * 109.46940 * 324.70177 * 11 2 1 35 35 H 1.08999 * 109.47003 * 204.70635 * 11 2 1 36 36 H 1.08997 * 109.49607 * 294.44876 * 14 12 11 37 37 H 1.09002 * 109.49568 * 54.54240 * 14 12 11 38 38 H 1.09004 * 109.46107 * 58.65509 * 15 14 12 39 39 H 1.08998 * 109.46129 * 178.61405 * 15 14 12 40 40 H 1.08997 * 109.49889 * 181.31461 * 16 15 14 41 41 H 1.09004 * 109.49750 * 301.38394 * 16 15 14 42 42 H 1.09000 * 109.50708 * 185.70769 * 17 16 15 43 43 H 1.08993 * 109.42857 * 65.42725 * 17 16 15 44 44 H 1.08995 * 109.47103 * 60.00226 * 21 19 18 45 45 H 1.08998 * 109.47271 * 299.99468 * 21 19 18 46 46 H 1.09004 * 109.47102 * 59.99564 * 23 22 21 47 47 H 1.09005 * 109.46680 * 299.99931 * 23 22 21 48 48 H 1.09007 * 110.48842 * 339.59337 * 26 24 23 49 49 H 1.08996 * 110.48901 * 102.10813 * 26 24 23 50 50 H 1.08999 * 109.88223 * 117.38659 * 27 26 24 51 51 H 1.08997 * 109.88372 * 238.54961 * 27 26 24 52 52 H 1.09009 * 110.61618 * 201.57701 * 29 28 27 53 53 H 1.09001 * 110.61861 * 78.74765 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.2149 1.1945 -0.1779 5 6 1.4746 2.3771 0.2287 6 7 0.2408 2.3569 0.6866 7 14 2.3173 4.0088 -0.1134 8 1 3.6912 3.7599 -0.6190 9 1 1.5436 4.7611 -1.1336 10 1 2.3866 4.8024 1.1398 11 6 2.1975 -1.2687 -0.0006 12 6 2.3372 -1.7763 -1.4371 13 1 1.3483 -1.9031 -1.8777 14 6 3.1427 -0.7697 -2.2646 15 6 3.3948 -1.3474 -3.6590 16 6 4.2107 -2.6367 -3.5391 17 6 3.4222 -3.6618 -2.7259 18 7 3.0456 -3.0635 -1.4379 19 6 3.3491 -3.6811 -0.2790 20 8 3.1189 -3.1334 0.7783 21 6 3.9746 -5.0520 -0.2971 22 8 4.1993 -5.4908 1.0442 23 6 4.7923 -6.7874 1.1400 24 6 4.9851 -7.1524 2.6133 25 1 5.5943 -6.4046 3.1208 26 6 5.6074 -8.5627 2.7561 27 6 4.8424 -9.1956 3.9346 28 8 3.9186 -8.2083 4.4269 29 6 3.6185 -7.3271 3.3233 30 1 -0.3633 -1.0233 -0.0944 31 1 -0.3634 0.4299 0.9334 32 1 -0.3633 0.5934 -0.8391 33 1 -0.2310 3.1893 0.8460 34 1 1.6528 -2.0030 0.5929 35 1 3.1876 -1.1168 0.4290 36 1 2.5818 0.1607 -2.3522 37 1 4.0962 -0.5753 -1.7735 38 1 2.4411 -1.5647 -4.1400 39 1 3.9466 -0.6229 -4.2580 40 1 4.4098 -3.0351 -4.5340 41 1 5.1544 -2.4247 -3.0365 42 1 4.0405 -4.5426 -2.5529 43 1 2.5236 -3.9455 -3.2737 44 1 4.9244 -5.0110 -0.8303 45 1 3.3054 -5.7501 -0.7999 46 1 5.7592 -6.7828 0.6368 47 1 4.1398 -7.5211 0.6666 48 1 5.4527 -9.1419 1.8457 49 1 6.6707 -8.4891 2.9843 50 1 4.2946 -10.0735 3.5922 51 1 5.5414 -9.4762 4.7224 52 1 3.2496 -6.3681 3.6872 53 1 2.8929 -7.7863 2.6518 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158549859.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:12 Heat of formation + Delta-G solvation = -104.674300 kcal Electronic energy + Delta-G solvation = -31179.498429 eV Core-core repulsion = 27051.997152 eV Total energy + Delta-G solvation = -4127.501277 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.56082 -40.47211 -38.94627 -37.97554 -37.34346 -34.18070 -33.78095 -33.70714 -31.81850 -30.56222 -29.13246 -28.04142 -27.60097 -26.31288 -25.44715 -23.99852 -23.39197 -22.15036 -21.91516 -21.52668 -19.99025 -18.77526 -18.21733 -17.76050 -17.46080 -17.08267 -16.94166 -16.70248 -16.37977 -16.17529 -15.75390 -15.42763 -15.34463 -15.25336 -14.97967 -14.69329 -14.41726 -14.29366 -14.08146 -13.97492 -13.72174 -13.45207 -13.24624 -12.86524 -12.81763 -12.71245 -12.60142 -12.53617 -12.32149 -12.23092 -12.09583 -11.98758 -11.85229 -11.79828 -11.72441 -11.58918 -11.51571 -11.34168 -10.70509 -10.70273 -10.59575 -10.17152 -9.47973 -8.83880 -7.70238 -5.20075 1.43798 1.44526 1.55249 1.65601 1.75100 2.51573 2.74502 3.07930 3.33037 3.58182 3.61249 3.77860 3.79638 3.91138 3.97619 4.00151 4.08166 4.16756 4.19449 4.21692 4.30819 4.31857 4.38808 4.41055 4.49758 4.50364 4.65816 4.67191 4.71526 4.79437 4.82857 4.84397 4.87255 4.89080 5.02664 5.05736 5.07639 5.14182 5.19569 5.21682 5.27626 5.35987 5.44003 5.53157 5.62390 5.74576 5.82219 5.90271 6.12974 6.33752 6.55198 7.17749 7.29340 7.92311 8.32662 9.25806 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013059 B = 0.002623 C = 0.002317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.662022 B =10670.973245 C =12080.995181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.175 3.825 2 N -0.623 5.623 3 C -0.237 4.237 4 H 0.069 0.931 5 C -0.067 4.067 6 N -0.946 5.946 7 Si 0.968 3.032 8 H -0.268 1.268 9 H -0.288 1.288 10 H -0.296 1.296 11 C 0.178 3.822 12 C 0.138 3.862 13 H 0.060 0.940 14 C -0.113 4.113 15 C -0.117 4.117 16 C -0.128 4.128 17 C 0.100 3.900 18 N -0.604 5.604 19 C 0.494 3.506 20 O -0.564 6.564 21 C 0.055 3.945 22 O -0.400 6.400 23 C 0.071 3.929 24 C -0.121 4.121 25 H 0.076 0.924 26 C -0.137 4.137 27 C 0.036 3.964 28 O -0.411 6.411 29 C 0.052 3.948 30 H 0.018 0.982 31 H 0.033 0.967 32 H 0.002 0.998 33 H 0.244 0.756 34 H 0.041 0.959 35 H 0.030 0.970 36 H 0.056 0.944 37 H 0.039 0.961 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.109 0.891 41 H 0.059 0.941 42 H 0.117 0.883 43 H 0.086 0.914 44 H 0.111 0.889 45 H 0.112 0.888 46 H 0.079 0.921 47 H 0.076 0.924 48 H 0.102 0.898 49 H 0.094 0.906 50 H 0.072 0.928 51 H 0.092 0.908 52 H 0.073 0.927 53 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.837 -26.975 -10.005 31.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.348 5.348 3 C -0.368 4.368 4 H 0.087 0.913 5 C -0.260 4.260 6 N -0.595 5.595 7 Si 0.797 3.203 8 H -0.192 1.192 9 H -0.215 1.215 10 H -0.223 1.223 11 C 0.052 3.948 12 C 0.033 3.967 13 H 0.078 0.922 14 C -0.152 4.152 15 C -0.154 4.154 16 C -0.166 4.166 17 C -0.021 4.021 18 N -0.340 5.340 19 C 0.283 3.717 20 O -0.442 6.442 21 C -0.024 4.024 22 O -0.319 6.319 23 C -0.005 4.005 24 C -0.140 4.140 25 H 0.095 0.905 26 C -0.174 4.174 27 C -0.040 4.040 28 O -0.331 6.331 29 C -0.025 4.025 30 H 0.037 0.963 31 H 0.051 0.949 32 H 0.020 0.980 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.048 0.952 36 H 0.074 0.926 37 H 0.058 0.942 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.127 0.873 41 H 0.078 0.922 42 H 0.135 0.865 43 H 0.104 0.896 44 H 0.128 0.872 45 H 0.129 0.871 46 H 0.097 0.903 47 H 0.094 0.906 48 H 0.121 0.879 49 H 0.113 0.887 50 H 0.090 0.910 51 H 0.110 0.890 52 H 0.091 0.909 53 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 12.506 -26.481 -9.031 30.646 hybrid contribution -0.030 1.561 0.036 1.562 sum 12.476 -24.919 -8.995 29.284 Atomic orbital electron populations 1.20730 0.82671 0.93999 0.99579 1.44544 1.02351 1.01998 1.85918 1.19523 0.92543 0.84927 1.39761 0.91271 1.25657 0.97556 1.01082 1.01736 1.70321 1.12913 1.25197 1.51091 0.85159 0.78064 0.80108 0.76955 1.19223 1.21505 1.22299 1.21215 0.95059 0.85522 0.92958 1.21859 0.94056 0.82409 0.98407 0.92246 1.21731 0.98823 0.98238 0.96360 1.21543 1.00918 0.98031 0.94935 1.21842 0.98204 0.94820 1.01714 1.22061 1.00801 0.96816 0.82447 1.48353 1.57319 1.21444 1.06844 1.21167 0.78711 0.88397 0.83420 1.90825 1.53682 1.66736 1.32928 1.22353 1.02324 0.92075 0.85631 1.88011 1.83011 1.35254 1.25633 1.22672 0.98720 0.83587 0.95545 1.22683 0.96965 0.98627 0.95761 0.90536 1.22905 1.01264 0.93407 0.99854 1.23427 0.91803 0.91572 0.97205 1.88899 1.64982 1.43900 1.35312 1.23574 0.96833 0.93689 0.88367 0.96342 0.94919 0.97986 0.94624 0.94046 0.95174 0.92572 0.94236 0.91397 0.91317 0.87299 0.92205 0.86490 0.89614 0.87172 0.87080 0.90305 0.90603 0.87940 0.88740 0.91013 0.88968 0.90905 0.91149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.62 9.04 127.77 1.15 10.78 16 2 N -0.62 -34.51 2.67 -726.96 -1.94 -36.45 16 3 C -0.24 -13.92 8.24 84.03 0.69 -13.22 16 4 H 0.07 3.99 7.80 -2.91 -0.02 3.97 16 5 C -0.07 -4.01 5.31 84.86 0.45 -3.56 16 6 N -0.95 -59.20 9.97 21.65 0.22 -58.98 16 7 Si 0.97 47.67 29.57 68.60 2.03 49.70 16 8 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 9 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 10 H -0.30 -14.64 7.11 99.48 0.71 -13.93 16 11 C 0.18 8.61 3.51 86.38 0.30 8.91 16 12 C 0.14 5.09 3.18 44.97 0.14 5.23 16 13 H 0.06 2.23 8.14 -2.38 -0.02 2.22 16 14 C -0.11 -3.97 4.68 30.67 0.14 -3.82 16 15 C -0.12 -2.72 5.89 30.62 0.18 -2.54 16 16 C -0.13 -2.00 6.07 30.53 0.19 -1.82 16 17 C 0.10 1.51 6.30 86.22 0.54 2.05 16 18 N -0.60 -16.61 2.98 -795.85 -2.37 -18.98 16 19 C 0.49 15.13 7.69 87.66 0.67 15.80 16 20 O -0.56 -24.43 11.90 16.01 0.19 -24.24 16 21 C 0.06 1.01 4.82 71.24 0.34 1.35 16 22 O -0.40 -9.45 9.73 -129.94 -1.26 -10.72 16 23 C 0.07 0.97 5.27 71.98 0.38 1.35 16 24 C -0.12 -1.99 3.41 -9.50 -0.03 -2.03 16 25 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 26 C -0.14 -1.34 6.60 31.58 0.21 -1.13 16 27 C 0.04 0.49 7.70 72.35 0.56 1.05 16 28 O -0.41 -9.50 11.54 -148.98 -1.72 -11.22 16 29 C 0.05 1.11 7.03 72.66 0.51 1.62 16 30 H 0.02 0.88 7.91 -2.39 -0.02 0.86 16 31 H 0.03 2.00 6.44 -2.39 -0.02 1.98 16 32 H 0.00 0.09 7.81 -2.39 -0.02 0.07 16 33 H 0.24 14.77 8.31 -92.71 -0.77 14.00 16 34 H 0.04 2.14 6.28 -2.39 -0.01 2.13 16 35 H 0.03 1.60 6.98 -2.39 -0.02 1.58 16 36 H 0.06 2.38 7.00 -2.39 -0.02 2.37 16 37 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 39 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.12 0.86 5.96 -2.39 -0.01 0.85 16 43 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.11 1.24 7.47 -2.39 -0.02 1.22 16 45 H 0.11 1.24 8.11 -2.39 -0.02 1.23 16 46 H 0.08 0.70 8.14 -2.38 -0.02 0.68 16 47 H 0.08 0.69 8.10 -2.38 -0.02 0.67 16 48 H 0.10 0.52 7.86 -2.38 -0.02 0.50 16 49 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 50 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 51 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 52 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 53 H 0.07 1.32 8.02 -2.39 -0.02 1.30 16 Total: -1.00 -83.26 404.29 2.44 -80.82 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: 0.86 Total: 10.06 kcal Atomic # 6 Polarization: 13.58 SS G_CDS: 6.44 Total: 20.02 kcal Atomic # 7 Polarization: -110.32 SS G_CDS: -4.10 Total: -114.42 kcal Atomic # 8 Polarization: -43.39 SS G_CDS: -2.79 Total: -46.18 kcal Atomic # 14 Polarization: 47.67 SS G_CDS: 2.03 Total: 49.70 kcal Total: -83.26 2.44 -80.82 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158549859.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.852 kcal (2) G-P(sol) polarization free energy of solvation -83.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds