Wall clock time and date at job start Sat Apr 11 2020 06:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36936 * 120.00037 * 2 1 4 4 H 1.08003 * 119.99907 * 174.40350 * 3 2 1 5 5 C 1.38809 * 119.99720 * 354.40244 * 3 2 1 6 6 N 1.31613 * 120.00120 * 5.08193 * 5 3 2 7 7 Si 1.86805 * 119.99711 * 185.08097 * 5 3 2 8 8 H 1.48499 * 109.47347 * 359.97438 * 7 5 3 9 9 H 1.48499 * 109.46985 * 119.99905 * 7 5 3 10 10 H 1.48499 * 109.47064 * 239.99753 * 7 5 3 11 11 C 1.46500 * 120.00032 * 179.97438 * 2 1 3 12 12 C 1.53002 * 109.47034 * 94.28140 * 11 2 1 13 13 H 1.09002 * 109.58671 * 298.38485 * 12 11 2 14 14 C 1.53192 * 109.58632 * 58.66679 * 12 11 2 15 15 C 1.53045 * 109.31310 * 174.42290 * 14 12 11 16 16 C 1.53038 * 109.53598 * 298.63984 * 15 14 12 17 17 C 1.53187 * 109.34234 * 61.34654 * 16 15 14 18 18 N 1.46926 * 109.58931 * 177.96137 * 12 11 2 19 19 C 1.34770 * 120.62959 * 6.59905 * 18 12 11 20 20 O 1.21279 * 120.00381 * 5.74378 * 19 18 12 21 21 C 1.50699 * 120.00130 * 185.74423 * 19 18 12 22 22 O 1.42900 * 109.47518 * 179.97438 * 21 19 18 23 23 C 1.42898 * 114.00382 * 180.02562 * 22 21 19 24 24 C 1.53001 * 109.47289 * 180.02562 * 23 22 21 25 25 H 1.08998 * 110.75667 * 57.01487 * 24 23 22 26 26 C 1.55302 * 110.84902 * 180.71922 * 24 23 22 27 27 C 1.54935 * 100.94733 * 152.31948 * 26 24 23 28 28 O 1.43652 * 105.13499 * 323.55062 * 27 26 24 29 29 C 1.43233 * 109.96839 * 24.42969 * 28 27 26 30 30 H 1.09009 * 109.46961 * 184.72388 * 1 2 3 31 31 H 1.08993 * 109.47396 * 304.72222 * 1 2 3 32 32 H 1.09003 * 109.46910 * 64.72606 * 1 2 3 33 33 H 0.97003 * 120.00282 * 180.02562 * 6 5 3 34 34 H 1.09003 * 109.47612 * 334.28160 * 11 2 1 35 35 H 1.08996 * 109.47657 * 214.28083 * 11 2 1 36 36 H 1.09002 * 109.49398 * 54.47347 * 14 12 11 37 37 H 1.08997 * 109.52453 * 294.39486 * 14 12 11 38 38 H 1.09001 * 109.45918 * 178.61529 * 15 14 12 39 39 H 1.08994 * 109.45540 * 58.65699 * 15 14 12 40 40 H 1.09003 * 109.49311 * 181.31976 * 16 15 14 41 41 H 1.09006 * 109.49809 * 301.37517 * 16 15 14 42 42 H 1.09002 * 109.58395 * 65.16938 * 17 16 15 43 43 H 1.09004 * 109.58586 * 185.59358 * 17 16 15 44 44 H 1.08996 * 109.47329 * 300.00419 * 21 19 18 45 45 H 1.09007 * 109.47139 * 60.00241 * 21 19 18 46 46 H 1.09004 * 109.46928 * 300.00437 * 23 22 21 47 47 H 1.09000 * 109.47181 * 59.99968 * 23 22 21 48 48 H 1.09012 * 111.11987 * 270.23962 * 26 24 23 49 49 H 1.09004 * 111.12928 * 34.39171 * 26 24 23 50 50 H 1.09004 * 110.31381 * 204.63835 * 27 26 24 51 51 H 1.09000 * 110.39713 * 82.50799 * 27 26 24 52 52 H 1.08995 * 109.83092 * 238.77503 * 29 28 27 53 53 H 1.09002 * 109.90798 * 117.84313 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.2259 1.1881 0.0912 5 6 1.4605 2.3851 -0.1173 6 7 0.1445 2.3895 -0.1277 7 14 2.4012 3.9927 -0.2602 8 1 3.8600 3.7177 -0.2227 9 1 2.0549 4.6565 -1.5426 10 1 2.0364 4.8820 0.8718 11 6 2.1975 -1.2687 0.0006 12 6 2.5458 -1.6572 -1.4378 13 1 1.6291 -1.7959 -2.0110 14 6 3.3897 -0.5508 -2.0785 15 6 3.8510 -1.0050 -3.4653 16 6 4.7190 -2.2582 -3.3309 17 6 3.8909 -3.3842 -2.7040 18 7 3.3227 -2.9042 -1.4369 19 6 3.5114 -3.5948 -0.2950 20 8 2.9529 -3.2467 0.7237 21 6 4.4164 -4.7998 -0.2840 22 8 4.4536 -5.3556 1.0319 23 6 5.2887 -6.5089 1.1524 24 6 5.2521 -7.0167 2.5953 25 1 4.2294 -7.2365 2.9015 26 6 6.1648 -8.2615 2.7665 27 6 6.5455 -8.1434 4.2637 28 8 6.6800 -6.7339 4.5065 29 6 5.9054 -5.9973 3.5532 30 1 -0.3633 -1.0243 0.0846 31 1 -0.3634 0.5853 0.8446 32 1 -0.3633 0.4388 -0.9293 33 1 -0.3371 3.2275 -0.2101 34 1 1.5774 -2.0462 0.4469 35 1 3.1145 -1.1586 0.5793 36 1 4.2597 -0.3489 -1.4537 37 1 2.7913 0.3554 -2.1728 38 1 4.4312 -0.2098 -3.9335 39 1 2.9808 -1.2304 -4.0816 40 1 5.0665 -2.5675 -4.3167 41 1 5.5769 -2.0401 -2.6948 42 1 3.0850 -3.6659 -3.3818 43 1 4.5304 -4.2464 -2.5149 44 1 4.0374 -5.5452 -0.9831 45 1 5.4221 -4.5016 -0.5806 46 1 4.9280 -7.2902 0.4833 47 1 6.3122 -6.2459 0.8853 48 1 5.6140 -9.1820 2.5726 49 1 7.0470 -8.1923 2.1301 50 1 7.4904 -8.6521 4.4551 51 1 5.7577 -8.5617 4.8902 52 1 6.5531 -5.3244 2.9913 53 1 5.1329 -5.4242 4.0660 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158549860.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:15 Heat of formation + Delta-G solvation = -101.817308 kcal Electronic energy + Delta-G solvation = -31279.086345 eV Core-core repulsion = 27151.708957 eV Total energy + Delta-G solvation = -4127.377388 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.55120 -40.50740 -38.95715 -37.98604 -37.35831 -34.16159 -33.77552 -33.69218 -31.80265 -30.62331 -29.15450 -28.04159 -27.60822 -26.33387 -25.43196 -23.94198 -23.24994 -22.16647 -21.92077 -21.62807 -19.98347 -18.78941 -18.25698 -17.78662 -17.56192 -17.21448 -16.95308 -16.61560 -16.51913 -15.88922 -15.67941 -15.44740 -15.34840 -15.22389 -14.94192 -14.59843 -14.52591 -14.20555 -14.13095 -13.93243 -13.82867 -13.37960 -13.23420 -12.94231 -12.83521 -12.73793 -12.62389 -12.58149 -12.18477 -12.15180 -12.09096 -11.98606 -11.95300 -11.86031 -11.69526 -11.67447 -11.50847 -11.30500 -10.65720 -10.63704 -10.52792 -10.13854 -9.49542 -8.88080 -7.71718 -5.15762 1.43755 1.44813 1.54950 1.63341 1.76887 2.51082 2.74960 2.97777 3.33964 3.49813 3.57953 3.79294 3.84190 3.93366 3.95466 4.00317 4.08253 4.16513 4.21024 4.23613 4.29311 4.34192 4.37539 4.40528 4.51098 4.52971 4.64523 4.65117 4.72119 4.80025 4.80575 4.86492 4.88946 4.92256 4.99010 5.05524 5.07000 5.15337 5.19665 5.23339 5.32911 5.40026 5.54327 5.55513 5.58978 5.75985 5.82664 6.00865 6.13094 6.31747 6.55564 7.19016 7.28485 7.92378 8.32994 9.26859 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013236 B = 0.002643 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.947873 B =10589.913193 C =11667.483199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.190 3.810 2 N -0.628 5.628 3 C -0.232 4.232 4 H 0.070 0.930 5 C -0.065 4.065 6 N -0.948 5.948 7 Si 0.967 3.033 8 H -0.269 1.269 9 H -0.288 1.288 10 H -0.296 1.296 11 C 0.175 3.825 12 C 0.139 3.861 13 H 0.054 0.946 14 C -0.112 4.112 15 C -0.118 4.118 16 C -0.127 4.127 17 C 0.100 3.900 18 N -0.604 5.604 19 C 0.497 3.503 20 O -0.564 6.564 21 C 0.055 3.945 22 O -0.399 6.399 23 C 0.070 3.930 24 C -0.120 4.120 25 H 0.085 0.915 26 C -0.135 4.135 27 C 0.039 3.961 28 O -0.414 6.414 29 C 0.056 3.944 30 H 0.009 0.991 31 H 0.019 0.981 32 H 0.015 0.985 33 H 0.243 0.757 34 H 0.056 0.944 35 H 0.022 0.978 36 H 0.039 0.961 37 H 0.059 0.941 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.107 0.893 41 H 0.062 0.938 42 H 0.083 0.917 43 H 0.118 0.882 44 H 0.114 0.886 45 H 0.106 0.894 46 H 0.083 0.917 47 H 0.070 0.930 48 H 0.110 0.890 49 H 0.095 0.905 50 H 0.102 0.898 51 H 0.064 0.936 52 H 0.068 0.932 53 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.304 -25.655 -7.083 30.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 N -0.354 5.354 3 C -0.361 4.361 4 H 0.088 0.912 5 C -0.257 4.257 6 N -0.599 5.599 7 Si 0.796 3.204 8 H -0.193 1.193 9 H -0.215 1.215 10 H -0.223 1.223 11 C 0.050 3.950 12 C 0.033 3.967 13 H 0.072 0.928 14 C -0.150 4.150 15 C -0.156 4.156 16 C -0.165 4.165 17 C -0.021 4.021 18 N -0.340 5.340 19 C 0.285 3.715 20 O -0.443 6.443 21 C -0.024 4.024 22 O -0.318 6.318 23 C -0.006 4.006 24 C -0.139 4.139 25 H 0.104 0.896 26 C -0.172 4.172 27 C -0.036 4.036 28 O -0.335 6.335 29 C -0.021 4.021 30 H 0.027 0.973 31 H 0.037 0.963 32 H 0.034 0.966 33 H 0.053 0.947 34 H 0.074 0.926 35 H 0.040 0.960 36 H 0.058 0.942 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.125 0.875 41 H 0.081 0.919 42 H 0.101 0.899 43 H 0.136 0.864 44 H 0.132 0.868 45 H 0.124 0.876 46 H 0.101 0.899 47 H 0.088 0.912 48 H 0.128 0.872 49 H 0.114 0.886 50 H 0.120 0.880 51 H 0.082 0.918 52 H 0.086 0.914 53 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 14.943 -25.199 -6.222 29.950 hybrid contribution -0.263 1.555 0.053 1.578 sum 14.680 -23.644 -6.169 28.506 Atomic orbital electron populations 1.20673 0.82311 0.93235 0.99298 1.44580 1.02496 1.02009 1.86276 1.19502 0.91075 0.84624 1.40929 0.91218 1.25613 0.96558 1.00769 1.02787 1.70430 1.06162 1.24714 1.58560 0.85172 0.78246 0.80132 0.76848 1.19328 1.21468 1.22334 1.21253 0.95135 0.85684 0.92967 1.21857 0.92745 0.83068 0.99002 0.92786 1.21758 0.98560 0.97938 0.96767 1.21556 1.00075 0.98664 0.95283 1.21908 0.97745 0.94260 1.02555 1.22145 0.98351 0.97858 0.83784 1.48382 1.53047 1.23672 1.08853 1.21129 0.82290 0.85128 0.82916 1.90780 1.49642 1.68901 1.34938 1.22349 0.99819 0.93783 0.86487 1.88004 1.69213 1.45800 1.28804 1.22669 0.94641 0.87317 0.95969 1.22719 1.01031 0.95532 0.94627 0.89615 1.23250 1.00035 0.97580 0.96324 1.23629 1.02709 0.81291 0.96001 1.88387 1.70390 1.19165 1.55517 1.23122 0.94129 0.94618 0.90225 0.97284 0.96287 0.96650 0.94692 0.92622 0.95999 0.94178 0.92280 0.91461 0.91751 0.87467 0.91926 0.89871 0.86386 0.86798 0.87606 0.89889 0.91174 0.87193 0.88619 0.87979 0.91765 0.91408 0.93234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 10.54 9.00 127.77 1.15 11.69 16 2 N -0.63 -34.72 2.79 -726.93 -2.03 -36.75 16 3 C -0.23 -13.37 7.49 84.03 0.63 -12.74 16 4 H 0.07 3.98 7.69 -2.91 -0.02 3.95 16 5 C -0.06 -3.80 5.45 84.86 0.46 -3.34 16 6 N -0.95 -58.39 9.44 21.65 0.20 -58.18 16 7 Si 0.97 47.14 29.56 68.60 2.03 49.17 16 8 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 9 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 10 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 11 C 0.18 8.45 3.71 86.38 0.32 8.77 16 12 C 0.14 5.26 3.21 44.98 0.14 5.40 16 13 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 14 C -0.11 -4.09 4.33 30.67 0.13 -3.96 16 15 C -0.12 -2.95 5.88 30.62 0.18 -2.77 16 16 C -0.13 -2.11 6.08 30.67 0.19 -1.92 16 17 C 0.10 1.61 6.35 86.36 0.55 2.16 16 18 N -0.60 -17.04 2.97 -795.03 -2.36 -19.40 16 19 C 0.50 15.29 7.60 87.66 0.67 15.95 16 20 O -0.56 -24.15 12.06 16.01 0.19 -23.96 16 21 C 0.05 1.02 4.77 71.24 0.34 1.36 16 22 O -0.40 -9.43 9.72 -129.94 -1.26 -10.70 16 23 C 0.07 0.97 5.25 71.98 0.38 1.35 16 24 C -0.12 -1.90 3.29 -9.53 -0.03 -1.93 16 25 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 26 C -0.13 -1.26 6.61 32.05 0.21 -1.05 16 27 C 0.04 0.54 7.78 72.64 0.56 1.10 16 28 O -0.41 -9.50 11.36 -148.98 -1.69 -11.19 16 29 C 0.06 1.23 7.26 72.45 0.53 1.76 16 30 H 0.01 0.44 7.71 -2.38 -0.02 0.42 16 31 H 0.02 1.14 6.93 -2.39 -0.02 1.12 16 32 H 0.02 0.89 7.15 -2.39 -0.02 0.87 16 33 H 0.24 14.52 8.31 -92.71 -0.77 13.75 16 34 H 0.06 2.84 5.90 -2.39 -0.01 2.83 16 35 H 0.02 1.14 7.16 -2.39 -0.02 1.12 16 36 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.06 2.66 6.50 -2.39 -0.02 2.65 16 38 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 42 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.12 0.95 5.93 -2.38 -0.01 0.94 16 44 H 0.11 1.23 7.71 -2.39 -0.02 1.21 16 45 H 0.11 1.35 7.92 -2.38 -0.02 1.33 16 46 H 0.08 0.70 8.14 -2.38 -0.02 0.68 16 47 H 0.07 0.74 8.07 -2.39 -0.02 0.73 16 48 H 0.11 0.55 8.14 -2.38 -0.02 0.53 16 49 H 0.10 0.65 8.04 -2.38 -0.02 0.63 16 50 H 0.10 1.01 8.14 -2.38 -0.02 0.99 16 51 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 52 H 0.07 1.52 7.76 -2.39 -0.02 1.50 16 53 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -81.28 401.95 2.35 -78.92 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: 0.87 Total: 10.25 kcal Atomic # 6 Polarization: 15.42 SS G_CDS: 6.41 Total: 21.83 kcal Atomic # 7 Polarization: -110.14 SS G_CDS: -4.19 Total: -114.33 kcal Atomic # 8 Polarization: -43.08 SS G_CDS: -2.76 Total: -45.84 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 2.03 Total: 49.17 kcal Total: -81.28 2.35 -78.92 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158549860.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.893 kcal (2) G-P(sol) polarization free energy of solvation -81.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds