Wall clock time and date at job start Sat Apr 11 2020 06:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42904 * 114.00584 * 2 1 4 4 C 1.52994 * 109.47467 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.46278 * 60.02842 * 4 3 2 6 6 N 1.46503 * 109.46639 * 299.97330 * 5 4 3 7 7 C 1.34775 * 119.99463 * 179.97438 * 6 5 4 8 8 O 1.21283 * 120.00460 * 359.97438 * 7 6 5 9 9 C 1.50701 * 120.00022 * 179.97438 * 7 6 5 10 10 C 1.53184 * 109.54443 * 299.55982 * 9 7 6 11 11 C 1.53087 * 109.16209 * 183.15119 * 10 9 7 12 12 O 1.42902 * 109.42006 * 57.60913 * 11 10 9 13 13 C 1.42911 * 114.09278 * 298.83876 * 12 11 10 14 14 C 1.53097 * 109.41381 * 61.15857 * 13 12 11 15 15 C 1.53043 * 109.45847 * 180.02562 * 4 3 2 16 16 C 1.53188 * 109.31445 * 58.64166 * 15 4 3 17 17 N 1.46925 * 108.77701 * 54.63452 * 16 15 4 18 18 C 1.36933 * 120.63218 * 126.36931 * 17 16 15 19 19 H 1.07998 * 120.00198 * 332.45537 * 18 17 16 20 20 C 1.38819 * 119.99952 * 152.17898 * 18 17 16 21 21 N 1.31617 * 120.00072 * 343.15781 * 20 18 17 22 22 Si 1.86804 * 119.99834 * 163.15974 * 20 18 17 23 23 H 1.48501 * 109.47135 * 359.97438 * 22 20 18 24 24 H 1.48493 * 109.46995 * 120.00274 * 22 20 18 25 25 H 1.48504 * 109.46877 * 240.00049 * 22 20 18 26 26 C 1.46933 * 118.73707 * 306.64093 * 17 16 15 27 27 C 1.52758 * 109.00408 * 53.31408 * 26 17 16 28 28 H 1.08999 * 109.47354 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46995 * 300.00056 * 1 2 3 30 30 H 1.09006 * 109.47016 * 59.99842 * 1 2 3 31 31 H 1.09000 * 109.47029 * 59.99464 * 3 2 1 32 32 H 1.08999 * 109.46708 * 300.00502 * 3 2 1 33 33 H 1.08997 * 109.46882 * 59.97003 * 5 4 3 34 34 H 1.08997 * 109.46749 * 179.97438 * 5 4 3 35 35 H 0.97000 * 120.00397 * 359.97438 * 6 5 4 36 36 H 1.09001 * 109.54562 * 59.81991 * 9 7 6 37 37 H 1.09000 * 109.51682 * 303.05055 * 10 9 7 38 38 H 1.08998 * 109.52363 * 63.23901 * 10 9 7 39 39 H 1.09004 * 109.47949 * 297.62023 * 11 10 9 40 40 H 1.09000 * 109.48064 * 177.59037 * 11 10 9 41 41 H 1.08993 * 109.48276 * 301.17671 * 13 12 11 42 42 H 1.09001 * 109.47930 * 181.13886 * 13 12 11 43 43 H 1.09001 * 109.52208 * 182.48533 * 14 13 12 44 44 H 1.08995 * 109.52051 * 62.29349 * 14 13 12 45 45 H 1.08999 * 109.49781 * 298.68607 * 15 4 3 46 46 H 1.09004 * 109.51980 * 178.60817 * 15 4 3 47 47 H 1.09000 * 109.58790 * 294.84843 * 16 15 4 48 48 H 1.09003 * 109.70840 * 174.49438 * 16 15 4 49 49 H 0.97002 * 120.00067 * 179.97438 * 21 20 18 50 50 H 1.09000 * 109.58175 * 173.14238 * 26 17 16 51 51 H 1.08993 * 109.58871 * 293.56927 * 26 17 16 52 52 H 1.09006 * 109.56332 * 185.55045 * 27 26 17 53 53 H 1.08994 * 109.39241 * 65.51309 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 3.9862 0.4261 -1.2506 6 7 3.3906 -0.9124 -1.2508 7 6 3.6488 -1.7646 -2.2626 8 8 4.3737 -1.4232 -3.1730 9 6 3.0367 -3.1417 -2.2626 10 6 3.4986 -3.9078 -1.0192 11 6 2.9358 -5.3307 -1.0677 12 8 3.3665 -5.9712 -2.2704 13 6 2.9239 -5.3254 -3.4660 14 6 3.4862 -3.9023 -3.5138 15 6 4.1577 2.5828 0.0000 16 6 3.6768 3.3508 1.2352 17 7 3.9782 2.5557 2.4334 18 6 4.6878 3.0989 3.4709 19 1 5.3932 3.8951 3.2843 20 6 4.4964 2.6301 4.7634 21 7 3.4274 1.9193 5.0540 22 14 5.7558 3.0081 6.0902 23 1 6.8578 3.8173 5.5105 24 1 5.1059 3.7694 7.1870 25 1 6.3052 1.7374 6.6276 26 6 3.5087 1.1647 2.4947 27 6 3.9868 0.4230 1.2478 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.6887 1.8464 0.8899 32 1 1.6886 1.8463 -0.8900 33 1 3.6637 0.9674 -2.1400 34 1 5.0728 0.3404 -1.2514 35 1 2.8106 -1.1853 -0.5229 36 1 1.9499 -3.0577 -2.2578 37 1 4.5877 -3.9474 -0.9995 38 1 3.1353 -3.4027 -0.1242 39 1 1.8467 -5.2917 -1.0465 40 1 3.2963 -5.8938 -0.2069 41 1 1.8347 -5.2864 -3.4762 42 1 3.2759 -5.8847 -4.3329 43 1 3.1140 -3.3932 -4.4029 44 1 4.5750 -3.9418 -3.5445 45 1 3.8547 3.1163 -0.9009 46 1 5.2442 2.4980 0.0245 47 1 2.6016 3.5159 1.1671 48 1 4.1907 4.3103 1.2945 49 1 3.2938 1.5913 5.9571 50 1 3.9139 0.6813 3.3836 51 1 2.4196 1.1479 2.5314 52 1 3.5621 -0.5808 1.2349 53 1 5.0747 0.3575 1.2605 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162057243.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:36 Heat of formation + Delta-G solvation = -135.834982 kcal Electronic energy + Delta-G solvation = -32257.687795 eV Core-core repulsion = 28128.835290 eV Total energy + Delta-G solvation = -4128.852505 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -41.52150 -40.58200 -39.32828 -38.04519 -36.28451 -34.87548 -34.40919 -32.56950 -31.95884 -31.64730 -28.86402 -28.31687 -26.87352 -26.03738 -25.45746 -24.42225 -23.90844 -22.61934 -21.90163 -20.83573 -19.84330 -18.70776 -18.18993 -17.33539 -17.05709 -17.00281 -16.92934 -16.74557 -16.61553 -15.99728 -15.81399 -15.57918 -15.52959 -15.23075 -15.13104 -14.73842 -14.62249 -14.45694 -14.08045 -14.00229 -13.74956 -13.35369 -13.25951 -13.15486 -12.98243 -12.62292 -12.56689 -12.48038 -12.36167 -12.29049 -12.20453 -11.95316 -11.82514 -11.68269 -11.45757 -11.42902 -11.24956 -11.10609 -10.87679 -10.56172 -10.46219 -10.37527 -9.91708 -8.63984 -7.86235 -5.30145 1.44990 1.48143 1.57396 1.68445 2.23703 2.51502 2.85263 3.01255 3.28628 3.63311 3.68510 3.73755 3.75252 3.80727 3.90268 3.99345 4.04304 4.27597 4.30173 4.33436 4.44653 4.49851 4.52690 4.54478 4.62097 4.63754 4.65331 4.68528 4.71060 4.76372 4.79519 4.81990 4.86547 4.90878 4.92756 5.05452 5.10456 5.12359 5.16415 5.22511 5.26084 5.28413 5.37590 5.51320 5.62721 5.67325 5.81144 6.22928 6.28790 6.40967 6.74842 7.17461 7.36296 7.89176 8.39399 9.19608 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014845 B = 0.002945 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.731141 B = 9506.722358 C =10025.060009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.401 6.401 3 C 0.080 3.920 4 C -0.049 4.049 5 C 0.141 3.859 6 N -0.702 5.702 7 C 0.509 3.491 8 O -0.593 6.593 9 C -0.102 4.102 10 C -0.145 4.145 11 C 0.062 3.938 12 O -0.404 6.404 13 C 0.062 3.938 14 C -0.132 4.132 15 C -0.112 4.112 16 C 0.141 3.859 17 N -0.610 5.610 18 C -0.260 4.260 19 H 0.064 0.936 20 C -0.048 4.048 21 N -0.931 5.931 22 Si 0.961 3.039 23 H -0.269 1.269 24 H -0.293 1.293 25 H -0.292 1.292 26 C 0.185 3.815 27 C -0.110 4.110 28 H 0.105 0.895 29 H 0.033 0.967 30 H 0.049 0.951 31 H 0.044 0.956 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.052 0.948 35 H 0.416 0.584 36 H 0.120 0.880 37 H 0.058 0.942 38 H 0.089 0.911 39 H 0.074 0.926 40 H 0.106 0.894 41 H 0.071 0.929 42 H 0.107 0.893 43 H 0.079 0.921 44 H 0.054 0.946 45 H 0.088 0.912 46 H 0.062 0.938 47 H 0.022 0.978 48 H 0.054 0.946 49 H 0.248 0.752 50 H 0.046 0.954 51 H 0.004 0.996 52 H 0.067 0.933 53 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.414 -11.271 -15.484 20.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.321 6.321 3 C 0.004 3.996 4 C -0.050 4.050 5 C 0.017 3.983 6 N -0.358 5.358 7 C 0.297 3.703 8 O -0.475 6.475 9 C -0.123 4.123 10 C -0.183 4.183 11 C -0.014 4.014 12 O -0.323 6.323 13 C -0.014 4.014 14 C -0.170 4.170 15 C -0.151 4.151 16 C 0.016 3.984 17 N -0.333 5.333 18 C -0.390 4.390 19 H 0.082 0.918 20 C -0.244 4.244 21 N -0.577 5.577 22 Si 0.789 3.211 23 H -0.194 1.194 24 H -0.220 1.220 25 H -0.219 1.219 26 C 0.060 3.940 27 C -0.149 4.149 28 H 0.124 0.876 29 H 0.052 0.948 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.070 0.930 35 H 0.260 0.740 36 H 0.138 0.862 37 H 0.076 0.924 38 H 0.108 0.892 39 H 0.092 0.908 40 H 0.124 0.876 41 H 0.090 0.910 42 H 0.125 0.875 43 H 0.098 0.902 44 H 0.073 0.927 45 H 0.106 0.894 46 H 0.081 0.919 47 H 0.040 0.960 48 H 0.073 0.927 49 H 0.058 0.942 50 H 0.065 0.935 51 H 0.022 0.978 52 H 0.085 0.915 53 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -6.746 -11.383 -15.935 20.713 hybrid contribution 0.158 0.941 1.512 1.788 sum -6.588 -10.442 -14.423 18.986 Atomic orbital electron populations 1.22874 0.79653 1.03944 1.00136 1.87431 1.21102 1.28100 1.95435 1.22550 0.92196 0.84646 1.00256 1.20651 0.93909 0.96220 0.94190 1.21218 0.97117 0.83089 0.96915 1.46298 1.49944 1.14094 1.25465 1.21084 0.80504 0.87534 0.81211 1.90649 1.39983 1.78963 1.37859 1.21375 1.02620 0.90517 0.97831 1.22186 1.01623 0.97430 0.97064 1.22697 0.99556 0.91573 0.87571 1.87923 1.76957 1.52719 1.14738 1.22724 0.99279 0.91601 0.87787 1.21974 1.01453 0.96497 0.97075 1.21879 1.00444 0.93899 0.98917 1.21068 0.97029 0.94000 0.86331 1.44300 1.64083 1.08761 1.16182 1.19514 1.14867 1.18040 0.86591 0.91824 1.25704 0.98335 1.01406 0.98947 1.70172 1.26698 1.41559 1.19260 0.85308 0.79272 0.77153 0.79320 1.19353 1.21978 1.21859 1.20414 0.94667 0.83989 0.94954 1.21873 0.99512 0.98500 0.95037 0.87620 0.94827 0.93208 0.93824 0.92149 0.91647 0.93001 0.74031 0.86175 0.92364 0.89209 0.90829 0.87587 0.91041 0.87541 0.90230 0.92714 0.89374 0.91937 0.96036 0.92736 0.94235 0.93509 0.97813 0.91486 0.93889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 11.01 113.37 1.25 1.81 16 2 O -0.40 -9.82 6.77 -148.98 -1.01 -10.83 16 3 C 0.08 2.20 4.04 71.98 0.29 2.49 16 4 C -0.05 -1.46 0.51 -52.15 -0.03 -1.49 16 5 C 0.14 3.94 4.56 86.38 0.39 4.34 16 6 N -0.70 -18.05 4.51 -463.06 -2.09 -20.14 16 7 C 0.51 13.67 7.16 87.66 0.63 14.30 16 8 O -0.59 -20.52 15.97 -3.04 -0.05 -20.57 16 9 C -0.10 -1.97 2.61 -11.42 -0.03 -2.00 16 10 C -0.14 -2.59 5.30 30.68 0.16 -2.43 16 11 C 0.06 0.94 6.84 72.01 0.49 1.43 16 12 O -0.40 -7.71 10.77 -148.98 -1.60 -9.31 16 13 C 0.06 0.93 6.84 72.01 0.49 1.43 16 14 C -0.13 -2.54 4.73 30.69 0.15 -2.39 16 15 C -0.11 -3.43 4.91 30.67 0.15 -3.28 16 16 C 0.14 5.42 6.05 86.36 0.52 5.94 16 17 N -0.61 -29.32 3.00 -699.93 -2.10 -31.42 16 18 C -0.26 -14.01 9.58 84.04 0.81 -13.20 16 19 H 0.06 3.38 7.88 -2.91 -0.02 3.35 16 20 C -0.05 -2.66 4.92 84.86 0.42 -2.24 16 21 N -0.93 -53.85 11.18 21.65 0.24 -53.61 16 22 Si 0.96 44.54 29.59 68.60 2.03 46.57 16 23 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 24 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 25 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 26 C 0.19 8.51 4.81 86.22 0.41 8.92 16 27 C -0.11 -3.95 4.57 30.53 0.14 -3.81 16 28 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 31 H 0.04 1.45 4.99 -2.39 -0.01 1.44 16 32 H 0.06 1.44 8.14 -2.39 -0.02 1.43 16 33 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.42 10.01 4.20 -92.71 -0.39 9.62 16 36 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.09 1.47 7.70 -2.39 -0.02 1.45 16 39 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 40 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.05 1.32 8.02 -2.39 -0.02 1.30 16 45 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 46 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 47 H 0.02 0.82 6.69 -2.39 -0.02 0.81 16 48 H 0.05 2.08 7.93 -2.39 -0.02 2.06 16 49 H 0.25 13.96 8.31 -92.71 -0.77 13.19 16 50 H 0.05 2.51 6.05 -2.39 -0.01 2.50 16 51 H 0.00 0.19 6.70 -2.39 -0.02 0.17 16 52 H 0.07 2.20 6.49 -2.38 -0.02 2.19 16 53 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -68.36 396.82 2.17 -66.19 By element: Atomic # 1 Polarization: 22.80 SS G_CDS: 0.50 Total: 23.29 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: 6.25 Total: 9.82 kcal Atomic # 7 Polarization: -101.22 SS G_CDS: -3.95 Total: -105.16 kcal Atomic # 8 Polarization: -38.05 SS G_CDS: -2.66 Total: -40.71 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -68.36 2.17 -66.19 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162057243.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.643 kcal (2) G-P(sol) polarization free energy of solvation -68.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds