Wall clock time and date at job start Sat Apr 11 2020 06:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42902 * 113.99830 * 2 1 4 4 C 1.52998 * 109.46803 * 179.97438 * 3 2 1 5 5 C 1.52993 * 109.46134 * 60.02672 * 4 3 2 6 6 N 1.46504 * 109.47334 * 299.97056 * 5 4 3 7 7 C 1.34770 * 119.99809 * 180.02562 * 6 5 4 8 8 O 1.21277 * 120.00584 * 359.97438 * 7 6 5 9 9 C 1.50710 * 119.99789 * 180.02562 * 7 6 5 10 10 O 1.42897 * 109.47095 * 180.02562 * 9 7 6 11 11 C 1.42904 * 113.99571 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.46841 * 179.97438 * 11 10 9 13 13 C 1.52996 * 117.49806 * 243.62109 * 12 11 10 14 14 C 1.52992 * 117.50051 * 174.99657 * 12 11 10 15 15 C 1.53045 * 109.45677 * 180.02562 * 4 3 2 16 16 C 1.53189 * 109.31558 * 58.64106 * 15 4 3 17 17 N 1.46927 * 108.77596 * 54.63264 * 16 15 4 18 18 C 1.36937 * 120.62634 * 126.37089 * 17 16 15 19 19 H 1.07997 * 120.00342 * 332.15811 * 18 17 16 20 20 C 1.38808 * 119.99653 * 151.89331 * 18 17 16 21 21 N 1.31615 * 119.99878 * 343.01147 * 20 18 17 22 22 Si 1.86804 * 120.00113 * 163.02023 * 20 18 17 23 23 H 1.48499 * 109.47394 * 94.07396 * 22 20 18 24 24 H 1.48497 * 109.47180 * 214.07698 * 22 20 18 25 25 H 1.48498 * 109.46774 * 334.07706 * 22 20 18 26 26 C 1.46921 * 118.74117 * 306.64796 * 17 16 15 27 27 C 1.52764 * 109.00826 * 53.30371 * 26 17 16 28 28 H 1.08999 * 109.46907 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47199 * 300.00173 * 1 2 3 30 30 H 1.09002 * 109.46827 * 60.00871 * 1 2 3 31 31 H 1.08997 * 109.47002 * 59.99508 * 3 2 1 32 32 H 1.08996 * 109.46735 * 299.99826 * 3 2 1 33 33 H 1.09000 * 109.47341 * 59.96908 * 5 4 3 34 34 H 1.09002 * 109.47186 * 179.97438 * 5 4 3 35 35 H 0.96998 * 119.99457 * 359.97438 * 6 5 4 36 36 H 1.09000 * 109.46699 * 299.99939 * 9 7 6 37 37 H 1.09003 * 109.46812 * 59.99582 * 9 7 6 38 38 H 1.08997 * 109.46766 * 299.99656 * 11 10 9 39 39 H 1.08994 * 109.47016 * 59.99928 * 11 10 9 40 40 H 1.09009 * 115.54917 * 29.32599 * 12 11 10 41 41 H 1.09000 * 117.50344 * 359.97438 * 13 12 11 42 42 H 1.09007 * 117.50205 * 145.01884 * 13 12 11 43 43 H 1.08998 * 117.50339 * 214.97982 * 14 12 11 44 44 H 1.09003 * 117.49622 * 0.02562 * 14 12 11 45 45 H 1.09006 * 109.49266 * 298.68780 * 15 4 3 46 46 H 1.09003 * 109.52173 * 178.61215 * 15 4 3 47 47 H 1.09002 * 109.58362 * 294.84721 * 16 15 4 48 48 H 1.09000 * 109.70426 * 174.49640 * 16 15 4 49 49 H 0.97005 * 120.00167 * 180.02562 * 21 20 18 50 50 H 1.08997 * 109.58753 * 173.14526 * 26 17 16 51 51 H 1.09000 * 109.58571 * 293.56740 * 26 17 16 52 52 H 1.09002 * 109.56043 * 185.55481 * 27 26 17 53 53 H 1.08997 * 109.38623 * 65.52180 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 6 3.9872 0.4257 -1.2486 6 7 3.3917 -0.9128 -1.2489 7 6 3.6515 -1.7657 -2.2596 8 8 4.3778 -1.4250 -3.1691 9 6 3.0385 -3.1425 -2.2601 10 8 3.4615 -3.8517 -3.4263 11 6 2.9332 -5.1759 -3.5247 12 6 3.4490 -5.8369 -4.8045 13 6 2.4177 -6.2139 -5.8699 14 6 3.0895 -7.3060 -5.0352 15 6 4.1576 2.5829 0.0013 16 6 3.6757 3.3514 1.2358 17 7 3.9761 2.5567 2.4345 18 6 4.6849 3.1004 3.4724 19 1 5.3939 3.8933 3.2854 20 6 4.4880 2.6362 4.7657 21 7 3.4142 1.9327 5.0560 22 14 5.7470 3.0102 6.0941 23 1 5.3414 4.2346 6.8300 24 1 5.8239 1.8673 7.0391 25 1 7.0767 3.2260 5.4691 26 6 3.5068 1.1658 2.4960 27 6 3.9858 0.4236 1.2496 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 1.6885 1.8464 0.8899 32 1 1.6886 1.8463 -0.8900 33 1 3.6654 0.9666 -2.1386 34 1 5.0738 0.3399 -1.2486 35 1 2.8111 -1.1854 -0.5213 36 1 3.3595 -3.6834 -1.3699 37 1 1.9519 -3.0564 -2.2608 38 1 3.2513 -5.7591 -2.6605 39 1 1.8445 -5.1316 -3.5524 40 1 4.4267 -5.4981 -5.1476 41 1 1.3717 -5.9914 -5.6590 42 1 2.7166 -6.1231 -6.9143 43 1 3.8304 -7.9337 -5.5303 44 1 2.4852 -7.8015 -4.2753 45 1 3.8552 3.1160 -0.9001 46 1 5.2441 2.4982 0.0266 47 1 2.6005 3.5164 1.1667 48 1 4.1895 4.3109 1.2951 49 1 3.2764 1.6086 5.9598 50 1 3.9112 0.6827 3.3854 51 1 2.4175 1.1489 2.5318 52 1 3.5611 -0.5802 1.2369 53 1 5.0738 0.3581 1.2633 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162131529.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:41 Heat of formation + Delta-G solvation = -96.701754 kcal Electronic energy + Delta-G solvation = -31003.012034 eV Core-core repulsion = 26875.856473 eV Total energy + Delta-G solvation = -4127.155561 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.30014 -40.20116 -39.06439 -38.03002 -37.31304 -36.22533 -34.62357 -32.65287 -31.63197 -30.19177 -28.67628 -28.08782 -26.99304 -26.03698 -25.44687 -23.88743 -23.24542 -22.51720 -21.81610 -21.30129 -19.85530 -18.68024 -18.21788 -17.89489 -17.35768 -17.16565 -16.91456 -16.74089 -16.63316 -15.99971 -15.97449 -15.73691 -15.37974 -15.24361 -15.10310 -14.82125 -14.61052 -14.48650 -14.03346 -13.78807 -13.57218 -13.39685 -13.24222 -13.10784 -12.95114 -12.59912 -12.54485 -12.38089 -12.36758 -12.20972 -12.06752 -11.96365 -11.80327 -11.44157 -11.38201 -11.26404 -11.23396 -11.08779 -10.76978 -10.54611 -10.50291 -10.42596 -9.94350 -8.62147 -7.85486 -5.29178 1.45872 1.48485 1.57540 1.65084 1.86603 2.52211 2.69631 2.87900 3.12709 3.29580 3.70163 3.76218 3.77585 3.90924 3.97366 3.97842 4.01002 4.15382 4.23406 4.28993 4.30898 4.35666 4.46762 4.52002 4.53719 4.55406 4.64879 4.66788 4.70774 4.71311 4.77204 4.78303 4.81199 4.92145 4.94650 5.01687 5.07320 5.18219 5.22458 5.24202 5.25102 5.27672 5.39486 5.51396 5.59897 5.68141 5.82508 6.11530 6.24469 6.42087 6.74188 7.18527 7.34634 7.90442 8.40778 9.20420 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.017977 B = 0.002224 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.151461 B =12586.350849 C =12872.743843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.402 6.402 3 C 0.079 3.921 4 C -0.048 4.048 5 C 0.143 3.857 6 N -0.699 5.699 7 C 0.504 3.496 8 O -0.584 6.584 9 C 0.048 3.952 10 O -0.395 6.395 11 C 0.089 3.911 12 C -0.177 4.177 13 C -0.179 4.179 14 C -0.158 4.158 15 C -0.112 4.112 16 C 0.141 3.859 17 N -0.609 5.609 18 C -0.260 4.260 19 H 0.064 0.936 20 C -0.049 4.049 21 N -0.931 5.931 22 Si 0.961 3.039 23 H -0.287 1.287 24 H -0.293 1.293 25 H -0.273 1.273 26 C 0.184 3.816 27 C -0.112 4.112 28 H 0.106 0.894 29 H 0.033 0.967 30 H 0.049 0.951 31 H 0.044 0.956 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.054 0.946 35 H 0.418 0.582 36 H 0.102 0.898 37 H 0.107 0.893 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.095 0.905 41 H 0.103 0.897 42 H 0.097 0.903 43 H 0.105 0.895 44 H 0.110 0.890 45 H 0.088 0.912 46 H 0.063 0.937 47 H 0.022 0.978 48 H 0.054 0.946 49 H 0.249 0.751 50 H 0.046 0.954 51 H 0.004 0.996 52 H 0.068 0.932 53 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.509 -14.005 -16.659 23.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.321 6.321 3 C 0.002 3.998 4 C -0.049 4.049 5 C 0.019 3.981 6 N -0.358 5.358 7 C 0.291 3.709 8 O -0.464 6.464 9 C -0.031 4.031 10 O -0.314 6.314 11 C 0.013 3.987 12 C -0.196 4.196 13 C -0.216 4.216 14 C -0.195 4.195 15 C -0.152 4.152 16 C 0.016 3.984 17 N -0.333 5.333 18 C -0.390 4.390 19 H 0.082 0.918 20 C -0.245 4.245 21 N -0.577 5.577 22 Si 0.790 3.210 23 H -0.214 1.214 24 H -0.220 1.220 25 H -0.198 1.198 26 C 0.059 3.941 27 C -0.151 4.151 28 H 0.124 0.876 29 H 0.052 0.948 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.261 0.739 36 H 0.120 0.880 37 H 0.125 0.875 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.113 0.887 41 H 0.122 0.878 42 H 0.115 0.885 43 H 0.123 0.877 44 H 0.128 0.872 45 H 0.106 0.894 46 H 0.081 0.919 47 H 0.040 0.960 48 H 0.073 0.927 49 H 0.058 0.942 50 H 0.064 0.936 51 H 0.022 0.978 52 H 0.087 0.913 53 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -6.831 -13.901 -17.261 23.192 hybrid contribution 0.079 0.490 1.639 1.713 sum -6.752 -13.411 -15.622 21.668 Atomic orbital electron populations 1.22875 0.79637 1.03960 1.00130 1.87421 1.21115 1.28131 1.95443 1.22568 0.92208 0.84650 1.00334 1.20644 0.93904 0.96218 0.94115 1.21233 0.97247 0.82607 0.97033 1.46130 1.50230 1.14115 1.25287 1.20838 0.80961 0.87436 0.81664 1.90677 1.39404 1.78639 1.37693 1.22262 1.00654 0.89824 0.90337 1.87965 1.72713 1.27994 1.42739 1.22242 0.97798 0.81728 0.96951 1.22137 1.00702 0.99016 0.97712 1.23169 0.98146 1.03331 0.96935 1.23074 1.03474 0.89942 1.03026 1.21884 1.00498 0.93854 0.98925 1.21072 0.97043 0.94011 0.86323 1.44288 1.64148 1.08746 1.16103 1.19472 1.14714 1.18289 0.86526 0.91848 1.25715 0.98311 1.01462 0.99004 1.70169 1.26449 1.41874 1.19232 0.85363 0.79600 0.76840 0.79239 1.21358 1.21978 1.19769 1.20421 0.94717 0.83994 0.94971 1.21891 0.99654 0.98573 0.94950 0.87592 0.94813 0.93236 0.93740 0.92097 0.91587 0.92729 0.73854 0.88005 0.87506 0.91379 0.91366 0.88679 0.87835 0.88467 0.87659 0.87204 0.89357 0.91852 0.96026 0.92729 0.94234 0.93567 0.97757 0.91310 0.93724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 11.01 113.37 1.25 1.81 16 2 O -0.40 -9.83 6.77 -148.98 -1.01 -10.84 16 3 C 0.08 2.17 4.05 71.98 0.29 2.46 16 4 C -0.05 -1.43 0.51 -52.16 -0.03 -1.46 16 5 C 0.14 4.04 4.56 86.38 0.39 4.43 16 6 N -0.70 -18.21 4.60 -463.06 -2.13 -20.35 16 7 C 0.50 14.39 7.91 87.66 0.69 15.08 16 8 O -0.58 -22.26 16.50 16.02 0.26 -22.00 16 9 C 0.05 0.98 6.42 71.24 0.46 1.44 16 10 O -0.39 -9.81 9.88 -129.94 -1.28 -11.10 16 11 C 0.09 1.47 6.22 71.98 0.45 1.92 16 12 C -0.18 -2.95 6.06 -10.80 -0.07 -3.01 16 13 C -0.18 -2.33 10.18 30.59 0.31 -2.02 16 14 C -0.16 -1.77 10.25 30.59 0.31 -1.45 16 15 C -0.11 -3.44 4.91 30.67 0.15 -3.29 16 16 C 0.14 5.42 6.05 86.36 0.52 5.94 16 17 N -0.61 -29.30 3.00 -699.94 -2.10 -31.40 16 18 C -0.26 -14.01 9.58 84.03 0.80 -13.20 16 19 H 0.06 3.36 7.89 -2.91 -0.02 3.34 16 20 C -0.05 -2.72 4.91 84.86 0.42 -2.31 16 21 N -0.93 -53.98 11.22 21.65 0.24 -53.74 16 22 Si 0.96 44.59 29.59 68.60 2.03 46.62 16 23 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 24 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 25 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 26 C 0.18 8.47 4.81 86.22 0.41 8.88 16 27 C -0.11 -3.99 4.57 30.53 0.14 -3.85 16 28 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.04 1.48 4.99 -2.39 -0.01 1.47 16 32 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.42 9.92 4.68 -92.71 -0.43 9.48 16 36 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.07 0.87 7.87 -2.39 -0.02 0.85 16 40 H 0.09 1.94 8.14 -2.38 -0.02 1.92 16 41 H 0.10 1.16 8.03 -2.39 -0.02 1.14 16 42 H 0.10 1.21 8.14 -2.38 -0.02 1.19 16 43 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.09 2.17 8.14 -2.38 -0.02 2.15 16 46 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 47 H 0.02 0.83 6.69 -2.39 -0.02 0.81 16 48 H 0.05 2.09 7.93 -2.39 -0.02 2.07 16 49 H 0.25 14.01 8.31 -92.70 -0.77 13.24 16 50 H 0.05 2.47 6.08 -2.39 -0.01 2.46 16 51 H 0.00 0.21 6.70 -2.39 -0.02 0.20 16 52 H 0.07 2.24 6.49 -2.39 -0.02 2.22 16 53 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -71.38 410.80 2.98 -68.40 By element: Atomic # 1 Polarization: 22.56 SS G_CDS: 0.45 Total: 23.01 kcal Atomic # 6 Polarization: 4.87 SS G_CDS: 6.51 Total: 11.38 kcal Atomic # 7 Polarization: -101.50 SS G_CDS: -3.99 Total: -105.49 kcal Atomic # 8 Polarization: -41.90 SS G_CDS: -2.03 Total: -43.93 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -71.38 2.98 -68.40 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162131529.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.299 kcal (2) G-P(sol) polarization free energy of solvation -71.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds