Wall clock time and date at job start Sat Apr 11 2020 06:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42898 * 113.99982 * 2 1 4 4 C 1.53002 * 109.47440 * 180.02562 * 3 2 1 5 5 C 1.53006 * 109.45259 * 299.99773 * 4 3 2 6 6 N 1.46503 * 109.46991 * 60.00271 * 5 4 3 7 7 C 1.34774 * 119.99418 * 179.97438 * 6 5 4 8 8 O 1.21279 * 120.00842 * 359.97438 * 7 6 5 9 9 C 1.50708 * 119.99845 * 179.97438 * 7 6 5 10 10 C 1.53003 * 109.47241 * 180.02562 * 9 7 6 11 11 H 1.08997 * 110.35102 * 55.68968 * 10 9 7 12 12 C 1.54944 * 110.30772 * 177.83709 * 10 9 7 13 13 C 1.55305 * 100.94009 * 155.36007 * 12 10 9 14 14 C 1.54381 * 102.25489 * 325.86510 * 13 12 10 15 15 O 1.43242 * 107.58792 * 21.35535 * 14 13 12 16 16 C 1.53040 * 109.45910 * 59.96739 * 4 3 2 17 17 C 1.53173 * 109.32328 * 181.38940 * 16 4 3 18 18 N 1.46921 * 108.76760 * 305.35502 * 17 16 4 19 19 C 1.36929 * 120.63099 * 233.62730 * 18 17 16 20 20 H 1.08010 * 120.00096 * 151.81410 * 19 18 17 21 21 C 1.38814 * 120.00227 * 331.81828 * 19 18 17 22 22 N 1.31613 * 119.99851 * 343.07941 * 21 19 18 23 23 Si 1.86798 * 120.00011 * 163.07687 * 21 19 18 24 24 H 1.48506 * 109.47144 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47341 * 119.99919 * 23 21 19 26 26 H 1.48501 * 109.47112 * 239.99956 * 23 21 19 27 27 C 1.46925 * 118.73872 * 53.61232 * 18 17 16 28 28 C 1.53033 * 109.46259 * 180.02562 * 4 3 2 29 29 H 1.08996 * 109.47284 * 60.00344 * 1 2 3 30 30 H 1.09005 * 109.46833 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46835 * 300.00057 * 1 2 3 32 32 H 1.08996 * 109.47433 * 59.99650 * 3 2 1 33 33 H 1.09008 * 109.46906 * 299.99651 * 3 2 1 34 34 H 1.08996 * 109.47352 * 299.99510 * 5 4 3 35 35 H 1.09000 * 109.46676 * 179.97438 * 5 4 3 36 36 H 0.96997 * 120.00336 * 359.97438 * 6 5 4 37 37 H 1.09002 * 109.46720 * 60.00220 * 9 7 6 38 38 H 1.08991 * 109.47178 * 300.00477 * 9 7 6 39 39 H 1.08999 * 111.12598 * 37.43849 * 12 10 9 40 40 H 1.08995 * 111.15908 * 273.29295 * 12 10 9 41 41 H 1.09005 * 110.84737 * 207.67342 * 13 12 10 42 42 H 1.09003 * 110.84801 * 84.05909 * 13 12 10 43 43 H 1.08994 * 109.83046 * 261.84731 * 14 13 12 44 44 H 1.08991 * 109.83168 * 140.86764 * 14 13 12 45 45 H 1.08997 * 109.50216 * 301.32236 * 16 4 3 46 46 H 1.09002 * 109.50026 * 61.42930 * 16 4 3 47 47 H 1.09001 * 109.58537 * 185.57174 * 17 16 4 48 48 H 1.09004 * 109.70690 * 65.21618 * 17 16 4 49 49 H 0.97000 * 120.00224 * 180.02562 * 22 21 19 50 50 H 1.08998 * 109.58935 * 186.59571 * 27 18 17 51 51 H 1.09006 * 109.58894 * 66.17686 * 27 18 17 52 52 H 1.08993 * 109.50148 * 298.57489 * 28 4 3 53 53 H 1.09002 * 109.49684 * 58.67627 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 6 3.9871 0.4252 1.2485 6 7 3.3911 -0.9131 1.2483 7 6 3.6507 -1.7663 2.2588 8 8 4.3779 -1.4265 3.1679 9 6 3.0372 -3.1429 2.2590 10 6 3.4888 -3.9024 3.5081 11 1 3.2420 -3.3360 4.4061 12 6 2.8257 -5.3019 3.5556 13 6 3.8448 -6.0814 4.4306 14 6 5.1881 -5.4436 4.0159 15 8 4.9013 -4.1582 3.4524 16 6 3.9862 0.4248 -1.2502 17 6 5.5106 0.2754 -1.2303 18 7 6.1141 1.6069 -1.0836 19 6 7.0591 2.0463 -1.9718 20 1 7.1702 3.1034 -2.1633 21 6 7.8743 1.1330 -2.6263 22 7 7.9829 -0.0969 -2.1705 23 14 8.8170 1.6496 -4.1539 24 1 8.5249 3.0736 -4.4579 25 1 10.2734 1.4823 -3.9171 26 1 8.4017 0.8037 -5.3016 27 6 5.6841 2.4582 0.0340 28 6 4.1577 2.5829 0.0000 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6886 1.8464 0.8899 33 1 1.6886 1.8463 -0.8901 34 1 3.6657 0.9661 2.1386 35 1 5.0736 0.3387 1.2480 36 1 2.8097 -1.1851 0.5211 37 1 3.3579 -3.6837 1.3687 38 1 1.9507 -3.0564 2.2599 39 1 2.7515 -5.7356 2.5584 40 1 1.8482 -5.2580 4.0360 41 1 3.8295 -7.1445 4.1900 42 1 3.6495 -5.9198 5.4908 43 1 5.6818 -6.0708 3.2737 44 1 5.8288 -5.3293 4.8903 45 1 3.5245 -0.5625 -1.2620 46 1 3.6865 0.9779 -2.1404 47 1 5.8456 -0.1768 -2.1637 48 1 5.8072 -0.3547 -0.3918 49 1 8.5528 -0.7350 -2.6276 50 1 6.1338 3.4461 -0.0650 51 1 5.9929 2.0069 0.9770 52 1 3.8563 3.1156 -0.9018 53 1 3.8178 3.1319 0.8782 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162131592.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:49 Heat of formation + Delta-G solvation = -131.586069 kcal Electronic energy + Delta-G solvation = -32041.051155 eV Core-core repulsion = 27912.382896 eV Total energy + Delta-G solvation = -4128.668259 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.34419 -40.49701 -39.41351 -38.25599 -36.03426 -34.53067 -33.35213 -32.77736 -32.41213 -31.60900 -28.97214 -28.38022 -27.12167 -26.21293 -25.47053 -23.90260 -22.79651 -22.50353 -22.26597 -21.07735 -19.85961 -18.71134 -17.97152 -17.62761 -17.04786 -16.99889 -16.95151 -16.71201 -16.47193 -16.18668 -16.00163 -15.51092 -15.29355 -15.28028 -14.94290 -14.81625 -14.33334 -14.17975 -14.08122 -13.69276 -13.58469 -13.35626 -13.05796 -13.02973 -12.86213 -12.63088 -12.57796 -12.52604 -12.28787 -12.25188 -12.11891 -12.05983 -11.95006 -11.83312 -11.65067 -11.42951 -11.20835 -11.09962 -10.69601 -10.54481 -10.45492 -10.42920 -9.81400 -8.65184 -7.85672 -5.32032 1.45495 1.46454 1.57844 1.83985 2.33959 2.51641 2.88159 2.98495 3.28760 3.59128 3.68190 3.75809 3.79041 3.92866 4.00934 4.03271 4.08119 4.21285 4.28899 4.32775 4.48516 4.52161 4.54332 4.58320 4.64711 4.67040 4.69454 4.70154 4.72692 4.80536 4.85125 4.88046 4.91592 4.92741 4.98149 5.02643 5.04312 5.08203 5.18195 5.25689 5.29903 5.30597 5.37801 5.49253 5.65001 5.73532 5.80334 6.23567 6.29943 6.39895 6.86193 7.15826 7.52019 7.87801 8.39977 9.20443 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.010201 B = 0.003450 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2744.263802 B = 8113.542634 C = 9943.842506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.407 6.407 3 C 0.083 3.917 4 C -0.052 4.052 5 C 0.142 3.858 6 N -0.703 5.703 7 C 0.497 3.503 8 O -0.592 6.592 9 C -0.132 4.132 10 C 0.088 3.912 11 H 0.060 0.940 12 C -0.141 4.141 13 C -0.147 4.147 14 C 0.034 3.966 15 O -0.409 6.409 16 C -0.107 4.107 17 C 0.183 3.817 18 N -0.609 5.609 19 C -0.260 4.260 20 H 0.069 0.931 21 C -0.054 4.054 22 N -0.937 5.937 23 Si 0.968 3.032 24 H -0.263 1.263 25 H -0.295 1.295 26 H -0.289 1.289 27 C 0.137 3.863 28 C -0.108 4.108 29 H 0.047 0.953 30 H 0.101 0.899 31 H 0.046 0.954 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.057 0.943 35 H 0.031 0.969 36 H 0.416 0.584 37 H 0.105 0.895 38 H 0.143 0.857 39 H 0.092 0.908 40 H 0.109 0.891 41 H 0.103 0.897 42 H 0.083 0.917 43 H 0.069 0.931 44 H 0.060 0.940 45 H 0.066 0.934 46 H 0.058 0.942 47 H 0.047 0.953 48 H -0.015 1.015 49 H 0.248 0.752 50 H 0.057 0.943 51 H 0.004 0.996 52 H 0.074 0.926 53 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.682 -7.668 8.451 24.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.327 6.327 3 C 0.007 3.993 4 C -0.052 4.052 5 C 0.017 3.983 6 N -0.360 5.360 7 C 0.285 3.715 8 O -0.473 6.473 9 C -0.171 4.171 10 C 0.031 3.969 11 H 0.077 0.923 12 C -0.178 4.178 13 C -0.184 4.184 14 C -0.042 4.042 15 O -0.329 6.329 16 C -0.146 4.146 17 C 0.057 3.943 18 N -0.332 5.332 19 C -0.391 4.391 20 H 0.087 0.913 21 C -0.249 4.249 22 N -0.584 5.584 23 Si 0.797 3.203 24 H -0.187 1.187 25 H -0.223 1.223 26 H -0.216 1.216 27 C 0.012 3.988 28 C -0.147 4.147 29 H 0.066 0.934 30 H 0.119 0.881 31 H 0.065 0.935 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.050 0.950 36 H 0.259 0.741 37 H 0.123 0.877 38 H 0.161 0.839 39 H 0.110 0.890 40 H 0.128 0.872 41 H 0.122 0.878 42 H 0.101 0.899 43 H 0.088 0.912 44 H 0.078 0.922 45 H 0.085 0.915 46 H 0.077 0.923 47 H 0.065 0.935 48 H 0.003 0.997 49 H 0.057 0.943 50 H 0.076 0.924 51 H 0.022 0.978 52 H 0.093 0.907 53 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -20.837 -7.545 8.915 23.887 hybrid contribution 1.009 0.138 -0.881 1.347 sum -19.828 -7.408 8.033 22.640 Atomic orbital electron populations 1.22909 0.79279 1.03941 1.00582 1.87510 1.21421 1.28226 1.95506 1.22530 0.90776 0.84743 1.01283 1.20696 0.94381 0.96115 0.94049 1.21150 0.96583 0.83431 0.97110 1.46205 1.50007 1.14137 1.25620 1.21316 0.80715 0.87994 0.81494 1.90674 1.39367 1.78864 1.38431 1.21917 1.03678 0.91090 1.00432 1.22840 0.80819 0.96673 0.96612 0.92252 1.23328 1.00010 0.92344 1.02115 1.23110 0.92763 1.01568 1.00992 1.23324 0.98677 0.84229 0.97997 1.88588 1.25079 1.36298 1.82962 1.21906 0.96432 0.99682 0.96629 1.20500 0.89982 0.85754 0.98016 1.44327 1.44835 1.15373 1.28684 1.19588 1.10283 0.92628 1.16560 0.91293 1.25857 0.99003 0.96739 1.03342 1.70240 1.41754 1.05812 1.40574 0.85191 0.77489 0.78151 0.79518 1.18744 1.22282 1.21599 1.21083 0.94065 0.94380 0.89285 1.21841 0.95487 0.94469 1.02925 0.93402 0.88106 0.93520 0.91885 0.91783 0.92508 0.95040 0.74063 0.87662 0.83936 0.88989 0.87221 0.87833 0.89875 0.91236 0.92150 0.91549 0.92347 0.93468 0.99675 0.94336 0.92441 0.97779 0.90699 0.89454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 113.37 1.25 1.63 16 2 O -0.41 -8.51 6.73 -148.98 -1.00 -9.52 16 3 C 0.08 1.87 4.80 71.98 0.35 2.22 16 4 C -0.05 -1.61 0.51 -52.15 -0.03 -1.64 16 5 C 0.14 5.08 3.81 86.38 0.33 5.41 16 6 N -0.70 -22.49 4.63 -463.04 -2.14 -24.63 16 7 C 0.50 17.06 7.73 87.66 0.68 17.74 16 8 O -0.59 -26.39 15.53 8.34 0.13 -26.26 16 9 C -0.13 -3.05 5.45 29.85 0.16 -2.89 16 10 C 0.09 2.15 2.92 31.26 0.09 2.24 16 11 H 0.06 1.59 8.00 -2.39 -0.02 1.58 16 12 C -0.14 -2.00 6.57 32.05 0.21 -1.79 16 13 C -0.15 -2.14 7.02 31.85 0.22 -1.92 16 14 C 0.03 0.79 7.79 72.45 0.56 1.35 16 15 O -0.41 -13.43 10.41 -137.61 -1.43 -14.87 16 16 C -0.11 -4.00 4.59 30.67 0.14 -3.86 16 17 C 0.18 9.22 4.83 86.36 0.42 9.64 16 18 N -0.61 -31.59 2.99 -699.13 -2.09 -33.68 16 19 C -0.26 -14.73 9.58 84.04 0.81 -13.93 16 20 H 0.07 3.77 7.89 -2.91 -0.02 3.74 16 21 C -0.05 -3.15 4.92 84.86 0.42 -2.73 16 22 N -0.94 -58.36 11.20 21.65 0.24 -58.12 16 23 Si 0.97 46.21 29.59 68.60 2.03 48.24 16 24 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 25 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 26 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 27 C 0.14 5.87 6.05 86.36 0.52 6.39 16 28 C -0.11 -3.42 4.90 30.67 0.15 -3.27 16 29 H 0.05 0.57 8.14 -2.39 -0.02 0.56 16 30 H 0.10 0.98 8.14 -2.38 -0.02 0.96 16 31 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 34 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.03 1.46 4.98 -2.39 -0.01 1.45 16 36 H 0.42 11.50 4.71 -92.71 -0.44 11.07 16 37 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 38 H 0.14 2.03 8.14 -2.39 -0.02 2.02 16 39 H 0.09 1.13 8.06 -2.39 -0.02 1.11 16 40 H 0.11 0.99 8.14 -2.39 -0.02 0.98 16 41 H 0.10 1.04 8.14 -2.38 -0.02 1.03 16 42 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 45 H 0.07 2.29 6.50 -2.39 -0.02 2.27 16 46 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 47 H 0.05 2.71 6.06 -2.39 -0.01 2.69 16 48 H -0.01 -0.84 6.70 -2.38 -0.02 -0.86 16 49 H 0.25 14.93 8.31 -92.71 -0.77 14.15 16 50 H 0.06 2.38 7.93 -2.39 -0.02 2.36 16 51 H 0.00 0.20 6.69 -2.38 -0.02 0.18 16 52 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 53 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -81.17 400.98 2.46 -78.71 By element: Atomic # 1 Polarization: 25.08 SS G_CDS: 0.45 Total: 25.52 kcal Atomic # 6 Polarization: 8.32 SS G_CDS: 6.28 Total: 14.60 kcal Atomic # 7 Polarization: -112.44 SS G_CDS: -3.99 Total: -116.43 kcal Atomic # 8 Polarization: -48.34 SS G_CDS: -2.31 Total: -50.64 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.24 kcal Total: -81.17 2.46 -78.71 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162131592.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.877 kcal (2) G-P(sol) polarization free energy of solvation -81.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds