Wall clock time and date at job start Sat Apr 11 2020 06:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42897 * 114.00002 * 2 1 4 4 C 1.53005 * 109.47075 * 174.02937 * 3 2 1 5 5 C 1.50697 * 115.54597 * 65.42198 * 4 3 2 6 6 O 1.21282 * 119.99561 * 123.94405 * 5 4 3 7 7 N 1.34777 * 120.00516 * 303.93449 * 5 4 3 8 8 C 1.46491 * 120.00210 * 186.40528 * 7 5 4 9 9 C 1.53005 * 109.47157 * 184.54409 * 8 7 5 10 10 C 1.53001 * 109.46018 * 65.68735 * 9 8 7 11 11 O 1.42897 * 109.46804 * 303.15813 * 10 9 8 12 12 C 1.42901 * 113.99604 * 182.68991 * 11 10 9 13 13 C 1.53042 * 109.45472 * 305.71462 * 9 8 7 14 14 C 1.53158 * 109.32721 * 301.35384 * 13 9 8 15 15 N 1.46920 * 108.77302 * 305.36209 * 14 13 9 16 16 C 1.36942 * 120.62967 * 233.58606 * 15 14 13 17 17 H 1.07997 * 120.00270 * 167.45838 * 16 15 14 18 18 C 1.38820 * 120.00072 * 347.46472 * 16 15 14 19 19 N 1.31624 * 119.99556 * 320.02319 * 18 16 15 20 20 Si 1.86799 * 120.00190 * 140.02731 * 18 16 15 21 21 H 1.48498 * 109.47178 * 94.99575 * 20 18 16 22 22 H 1.48501 * 109.46831 * 214.99627 * 20 18 16 23 23 H 1.48495 * 109.46887 * 334.99364 * 20 18 16 24 24 C 1.46920 * 118.74072 * 53.60554 * 15 14 13 25 25 C 1.53039 * 109.45782 * 185.66046 * 9 8 7 26 26 C 1.52995 * 117.49481 * 279.75096 * 4 3 2 27 27 C 1.52996 * 117.49624 * 211.09375 * 4 3 2 28 28 H 1.09002 * 109.46971 * 173.28840 * 1 2 3 29 29 H 1.09005 * 109.46978 * 53.29063 * 1 2 3 30 30 H 1.08997 * 109.47342 * 293.29065 * 1 2 3 31 31 H 1.09000 * 109.47170 * 294.03087 * 3 2 1 32 32 H 1.09004 * 109.47155 * 54.02570 * 3 2 1 33 33 H 0.97004 * 119.99505 * 6.40395 * 7 5 4 34 34 H 1.09004 * 109.47048 * 304.54120 * 8 7 5 35 35 H 1.09000 * 109.47438 * 64.54345 * 8 7 5 36 36 H 1.09002 * 109.46812 * 63.15582 * 10 9 8 37 37 H 1.09002 * 109.47030 * 183.15589 * 10 9 8 38 38 H 1.08996 * 109.47439 * 306.27708 * 12 11 10 39 39 H 1.09001 * 109.47392 * 66.27806 * 12 11 10 40 40 H 1.09001 * 109.47477 * 186.27956 * 12 11 10 41 41 H 1.09000 * 109.49724 * 61.30084 * 13 9 8 42 42 H 1.09001 * 109.49118 * 181.39334 * 13 9 8 43 43 H 1.09004 * 109.58895 * 185.57179 * 14 13 9 44 44 H 1.09002 * 109.58854 * 65.14816 * 14 13 9 45 45 H 0.96996 * 119.99914 * 179.97438 * 19 18 16 46 46 H 1.09005 * 109.58770 * 186.60491 * 24 15 14 47 47 H 1.09001 * 109.70038 * 66.25426 * 24 15 14 48 48 H 1.09000 * 109.49362 * 178.60595 * 25 9 8 49 49 H 1.08998 * 109.50076 * 298.67168 * 25 9 8 50 50 H 1.08995 * 117.50222 * 0.02562 * 26 4 3 51 51 H 1.09003 * 117.49380 * 145.02264 * 26 4 3 52 52 H 1.09002 * 117.49306 * 214.97991 * 27 4 3 53 53 H 1.08995 * 117.50085 * 359.97276 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5284 1.1878 0.1501 5 6 4.2451 0.5222 -0.9964 6 8 5.1434 1.1022 -1.5686 7 7 3.8879 -0.7177 -1.3857 8 6 4.6726 -1.4203 -2.4039 9 6 3.9950 -2.7496 -2.7427 10 6 2.6449 -2.4780 -3.4094 11 8 1.8412 -1.6712 -2.5462 12 6 0.5301 -1.4085 -3.0504 13 6 3.7771 -3.5526 -1.4583 14 6 5.1269 -3.7930 -0.7756 15 7 6.0367 -4.4293 -1.7378 16 6 6.6764 -5.5989 -1.4248 17 1 7.1778 -6.1636 -2.1969 18 6 6.6802 -6.0590 -0.1151 19 7 6.8297 -5.2104 0.8800 20 14 6.4733 -7.8821 0.2352 21 1 7.8097 -8.5123 0.3841 22 1 5.6993 -8.0604 1.4899 23 1 5.7465 -8.5229 -0.8901 24 6 6.2476 -3.7866 -3.0421 25 6 4.8850 -3.5462 -3.6995 26 6 4.0836 0.9611 1.5576 27 6 4.2563 2.3208 0.8761 28 1 -0.3633 -1.0206 -0.1201 29 1 -0.3633 0.6143 -0.8239 30 1 -0.3634 0.4063 0.9439 31 1 1.7757 1.8076 -0.9386 32 1 1.6065 1.8829 0.8317 33 1 3.1112 -1.1449 -0.9917 34 1 4.7362 -0.8056 -3.3018 35 1 5.6757 -1.6108 -2.0222 36 1 2.8040 -1.9545 -4.3521 37 1 2.1371 -3.4235 -3.6001 38 1 0.6041 -0.9852 -4.0521 39 1 -0.0371 -2.3384 -3.0900 40 1 0.0232 -0.7014 -2.3938 41 1 3.1242 -2.9949 -0.7869 42 1 3.3168 -4.5103 -1.7018 43 1 4.9896 -4.4473 0.0853 44 1 5.5465 -2.8410 -0.4504 45 1 6.8321 -5.5318 1.7952 46 1 6.8499 -4.4368 -3.6767 47 1 6.7598 -2.8344 -2.9040 48 1 4.4143 -4.5039 -3.9218 49 1 5.0204 -2.9842 -4.6235 50 1 3.3674 0.8953 2.3766 51 1 4.9676 0.3308 1.6543 52 1 5.2539 2.5845 0.5248 53 1 3.6539 3.1502 1.2465 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162356993.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:34 Heat of formation + Delta-G solvation = -90.892640 kcal Electronic energy + Delta-G solvation = -33239.318029 eV Core-core repulsion = 29112.414370 eV Total energy + Delta-G solvation = -4126.903659 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -41.48496 -40.34874 -38.70084 -38.19322 -37.07402 -36.03868 -34.49055 -32.73602 -31.64054 -29.34771 -28.99979 -27.61078 -27.09559 -26.28780 -25.41406 -24.09751 -23.56262 -23.34936 -22.45791 -20.65604 -19.67897 -18.66175 -17.96236 -17.30129 -17.11231 -17.02489 -16.82792 -16.68886 -16.54519 -16.23113 -16.05102 -15.60937 -15.39593 -15.25429 -15.20816 -14.75727 -14.68639 -14.25607 -14.05059 -13.77973 -13.49978 -13.29111 -13.16906 -13.05202 -12.94409 -12.63226 -12.49504 -12.48354 -12.30089 -12.27593 -12.16296 -12.00685 -11.75747 -11.56069 -11.50676 -11.25988 -11.17484 -11.10125 -10.79222 -10.44544 -10.40988 -10.30470 -9.80813 -8.89094 -7.97210 -5.08487 1.44364 1.50395 1.60674 1.61319 2.22517 2.54583 2.65578 2.92424 3.09139 3.12904 3.65925 3.71344 3.73330 3.80933 3.88917 3.97509 4.01854 4.06474 4.28380 4.40801 4.46439 4.49180 4.54905 4.58869 4.60768 4.62159 4.67032 4.69054 4.70717 4.71090 4.75189 4.80811 4.87161 4.89241 4.92096 4.95358 5.02293 5.05618 5.17647 5.18233 5.23502 5.24080 5.35414 5.45779 5.64638 5.71628 5.75676 6.27919 6.32612 6.37918 6.83763 7.10263 7.44269 7.88983 8.38293 9.11297 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.011592 B = 0.004046 C = 0.003712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2414.797287 B = 6919.001935 C = 7540.728181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.400 6.400 3 C 0.113 3.887 4 C -0.175 4.175 5 C 0.536 3.464 6 O -0.601 6.601 7 N -0.685 5.685 8 C 0.140 3.860 9 C -0.051 4.051 10 C 0.077 3.923 11 O -0.392 6.392 12 C 0.029 3.971 13 C -0.106 4.106 14 C 0.174 3.826 15 N -0.606 5.606 16 C -0.272 4.272 17 H 0.073 0.927 18 C -0.040 4.040 19 N -0.912 5.912 20 Si 0.935 3.065 21 H -0.290 1.290 22 H -0.293 1.293 23 H -0.272 1.272 24 C 0.138 3.862 25 C -0.108 4.108 26 C -0.146 4.146 27 C -0.124 4.124 28 H 0.089 0.911 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.086 0.914 33 H 0.422 0.578 34 H 0.058 0.942 35 H 0.037 0.963 36 H 0.059 0.941 37 H 0.062 0.938 38 H 0.042 0.958 39 H 0.047 0.953 40 H 0.093 0.907 41 H 0.063 0.937 42 H 0.058 0.942 43 H 0.051 0.949 44 H -0.011 1.011 45 H 0.250 0.750 46 H 0.059 0.941 47 H 0.009 0.991 48 H 0.074 0.926 49 H 0.087 0.913 50 H 0.130 0.870 51 H 0.074 0.926 52 H 0.088 0.912 53 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.732 13.332 -4.418 23.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.319 6.319 3 C 0.036 3.964 4 C -0.178 4.178 5 C 0.323 3.677 6 O -0.484 6.484 7 N -0.339 5.339 8 C 0.015 3.985 9 C -0.051 4.051 10 C 0.001 3.999 11 O -0.311 6.311 12 C -0.067 4.067 13 C -0.145 4.145 14 C 0.048 3.952 15 N -0.329 5.329 16 C -0.401 4.401 17 H 0.091 0.909 18 C -0.237 4.237 19 N -0.557 5.557 20 Si 0.763 3.237 21 H -0.217 1.217 22 H -0.219 1.219 23 H -0.197 1.197 24 C 0.013 3.987 25 C -0.147 4.147 26 C -0.184 4.184 27 C -0.162 4.162 28 H 0.107 0.893 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.104 0.896 33 H 0.265 0.735 34 H 0.076 0.924 35 H 0.055 0.945 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.061 0.939 39 H 0.065 0.935 40 H 0.111 0.889 41 H 0.082 0.918 42 H 0.077 0.923 43 H 0.070 0.930 44 H 0.007 0.993 45 H 0.059 0.941 46 H 0.078 0.922 47 H 0.027 0.973 48 H 0.093 0.907 49 H 0.106 0.894 50 H 0.149 0.851 51 H 0.093 0.907 52 H 0.107 0.893 53 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -17.928 13.554 -4.495 22.920 hybrid contribution 0.065 -1.134 0.365 1.193 sum -17.863 12.420 -4.130 22.145 Atomic orbital electron populations 1.22911 0.79483 1.03370 1.00834 1.87884 1.21236 1.27349 1.95462 1.21851 0.87321 0.85513 1.01719 1.21470 0.95793 1.07200 0.93371 1.20024 0.82397 0.81562 0.83734 1.90617 1.34113 1.65651 1.57986 1.46052 1.31559 1.15606 1.40683 1.21213 0.93964 0.92071 0.91216 1.20686 0.94601 0.93391 0.96471 1.22552 0.89973 0.94829 0.92568 1.87825 1.25911 1.71347 1.45984 1.22894 0.83525 1.00837 0.99470 1.21869 0.97466 0.98895 0.96301 1.20620 0.88256 0.94087 0.92258 1.44498 1.49314 1.25660 1.13429 1.19440 1.31043 0.96889 0.92756 0.90934 1.25225 1.02311 1.00616 0.95508 1.70500 1.50155 1.36040 0.99043 0.85747 0.77738 0.83150 0.77054 1.21732 1.21921 1.19670 1.21063 0.95558 0.95186 0.86885 1.21844 0.95569 1.00021 0.97312 1.23063 1.02731 0.99624 0.92955 1.23092 1.01520 0.92176 0.99370 0.89262 0.92913 0.92971 0.92575 0.89587 0.73484 0.92373 0.94466 0.92276 0.92026 0.93939 0.93466 0.88911 0.91811 0.92306 0.93023 0.99274 0.94080 0.92230 0.97293 0.90706 0.89421 0.85144 0.90718 0.89347 0.84226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 9.65 113.37 1.09 1.49 16 2 O -0.40 -8.36 8.88 -148.98 -1.32 -9.68 16 3 C 0.11 2.16 5.76 71.98 0.41 2.57 16 4 C -0.18 -4.57 2.24 -52.93 -0.12 -4.69 16 5 C 0.54 19.09 7.15 87.66 0.63 19.71 16 6 O -0.60 -25.83 16.47 -3.03 -0.05 -25.88 16 7 N -0.69 -23.57 4.36 -463.07 -2.02 -25.59 16 8 C 0.14 5.04 3.81 86.38 0.33 5.37 16 9 C -0.05 -1.62 0.51 -52.15 -0.03 -1.64 16 10 C 0.08 1.90 4.80 71.98 0.35 2.24 16 11 O -0.39 -9.39 7.22 -148.98 -1.08 -10.46 16 12 C 0.03 0.47 11.02 113.37 1.25 1.72 16 13 C -0.11 -4.00 4.55 30.66 0.14 -3.86 16 14 C 0.17 8.52 5.22 86.35 0.45 8.97 16 15 N -0.61 -30.63 3.03 -699.17 -2.12 -32.75 16 16 C -0.27 -15.23 9.57 84.03 0.80 -14.43 16 17 H 0.07 3.97 7.95 -2.91 -0.02 3.94 16 18 C -0.04 -2.27 4.43 84.86 0.38 -1.89 16 19 N -0.91 -55.29 11.74 21.65 0.25 -55.04 16 20 Si 0.94 44.96 29.69 68.60 2.04 47.00 16 21 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 22 H -0.29 -14.09 7.11 99.48 0.71 -13.39 16 23 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 24 C 0.14 5.74 6.04 86.36 0.52 6.26 16 25 C -0.11 -3.42 4.91 30.67 0.15 -3.27 16 26 C -0.15 -3.53 9.96 30.62 0.30 -3.23 16 27 C -0.12 -2.72 9.73 30.62 0.30 -2.42 16 28 H 0.09 1.13 8.12 -2.39 -0.02 1.11 16 29 H 0.05 0.53 7.46 -2.38 -0.02 0.52 16 30 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.09 1.13 8.08 -2.38 -0.02 1.11 16 33 H 0.42 13.71 3.18 -92.71 -0.29 13.42 16 34 H 0.06 2.06 8.10 -2.38 -0.02 2.04 16 35 H 0.04 1.64 5.00 -2.39 -0.01 1.63 16 36 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.04 0.63 8.13 -2.39 -0.02 0.61 16 39 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.09 1.26 5.89 -2.39 -0.01 1.25 16 41 H 0.06 2.31 6.17 -2.39 -0.01 2.30 16 42 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 43 H 0.05 2.88 5.69 -2.38 -0.01 2.87 16 44 H -0.01 -0.58 6.83 -2.39 -0.02 -0.60 16 45 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 46 H 0.06 2.39 7.86 -2.38 -0.02 2.37 16 47 H 0.01 0.40 6.57 -2.39 -0.02 0.39 16 48 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 49 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 50 H 0.13 2.41 8.14 -2.39 -0.02 2.39 16 51 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 52 H 0.09 2.32 7.84 -2.39 -0.02 2.31 16 53 H 0.14 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -73.99 402.79 3.26 -70.72 By element: Atomic # 1 Polarization: 28.16 SS G_CDS: 0.60 Total: 28.76 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: 6.96 Total: 12.92 kcal Atomic # 7 Polarization: -109.49 SS G_CDS: -3.88 Total: -113.37 kcal Atomic # 8 Polarization: -43.58 SS G_CDS: -2.45 Total: -46.03 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.04 Total: 47.00 kcal Total: -73.99 3.26 -70.72 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162356993.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.168 kcal (2) G-P(sol) polarization free energy of solvation -73.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds