Wall clock time and date at job start Sat Apr 11 2020 06:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50701 * 119.99987 * 2 1 4 4 C 1.52998 * 109.46604 * 125.00456 * 3 2 1 5 5 O 1.42908 * 109.46829 * 180.02562 * 4 3 2 6 6 C 1.42900 * 113.99762 * 180.02562 * 5 4 3 7 7 C 1.50697 * 109.46623 * 179.97438 * 6 5 4 8 8 O 1.21280 * 120.00383 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99790 * 179.97438 * 7 6 5 10 10 C 1.46500 * 120.00205 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.47245 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.46472 * 60.02565 * 11 10 9 13 13 O 1.42907 * 109.46904 * 299.97343 * 12 11 10 14 14 C 1.42899 * 113.99635 * 179.97438 * 13 12 11 15 15 C 1.53042 * 109.45947 * 179.97438 * 11 10 9 16 16 C 1.53192 * 109.31216 * 58.65543 * 15 11 10 17 17 N 1.46930 * 108.77834 * 54.63480 * 16 15 11 18 18 C 1.36932 * 120.62872 * 126.36699 * 17 16 15 19 19 H 1.08002 * 120.00663 * 332.45264 * 18 17 16 20 20 C 1.38819 * 119.99763 * 152.17982 * 18 17 16 21 21 N 1.31619 * 119.99653 * 343.16079 * 20 18 17 22 22 Si 1.86799 * 120.00056 * 163.16209 * 20 18 17 23 23 H 1.48498 * 109.47033 * 89.99898 * 22 20 18 24 24 H 1.48497 * 109.46906 * 209.99748 * 22 20 18 25 25 H 1.48496 * 109.47329 * 330.00182 * 22 20 18 26 26 C 1.46922 * 118.73694 * 306.64373 * 17 16 15 27 27 C 1.52760 * 109.00877 * 53.30539 * 26 17 16 28 28 H 1.07998 * 119.99678 * 359.97438 * 1 2 3 29 29 H 1.07997 * 120.00089 * 179.97438 * 1 2 3 30 30 H 1.07998 * 119.99678 * 180.02562 * 2 1 3 31 31 H 1.08998 * 109.47099 * 5.00312 * 3 2 1 32 32 H 1.08995 * 109.47044 * 245.00473 * 3 2 1 33 33 H 1.08998 * 109.47510 * 60.00108 * 4 3 2 34 34 H 1.09005 * 109.47114 * 299.99325 * 4 3 2 35 35 H 1.08996 * 109.47230 * 59.99535 * 6 5 4 36 36 H 1.08995 * 109.47075 * 299.99375 * 6 5 4 37 37 H 0.97003 * 120.00237 * 359.97438 * 9 7 6 38 38 H 1.09005 * 109.47152 * 59.99668 * 10 9 7 39 39 H 1.08995 * 109.46886 * 299.99837 * 10 9 7 40 40 H 1.09001 * 109.47035 * 59.97233 * 12 11 10 41 41 H 1.08991 * 109.47289 * 179.97438 * 12 11 10 42 42 H 1.09006 * 109.46724 * 179.97438 * 14 13 12 43 43 H 1.08996 * 109.47883 * 299.99890 * 14 13 12 44 44 H 1.09002 * 109.47085 * 60.00353 * 14 13 12 45 45 H 1.09002 * 109.49976 * 298.70465 * 15 11 10 46 46 H 1.09004 * 109.52502 * 178.62040 * 15 11 10 47 47 H 1.08997 * 109.58711 * 294.84701 * 16 15 11 48 48 H 1.09004 * 109.70548 * 174.49237 * 16 15 11 49 49 H 0.97007 * 119.99830 * 179.97438 * 21 20 18 50 50 H 1.08996 * 109.58958 * 173.14351 * 26 17 16 51 51 H 1.09005 * 109.58698 * 293.56931 * 26 17 16 52 52 H 1.08996 * 109.56719 * 185.54717 * 27 26 17 53 53 H 1.09007 * 109.38352 * 65.51663 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3329 1.1816 5 8 3.7493 2.5708 1.1820 6 6 4.6888 2.6994 2.2510 7 6 5.3807 4.0345 2.1536 8 8 5.0970 4.8007 1.2573 9 7 6.3143 4.3777 3.0631 10 6 6.9866 5.6758 2.9688 11 6 7.9926 5.8135 4.1133 12 6 9.0308 4.6939 4.0170 13 8 8.3753 3.4273 4.1093 14 6 9.2599 2.3080 4.0293 15 6 8.6952 7.1695 4.0142 16 6 7.6498 8.2876 4.0762 17 7 6.8428 8.1136 5.2917 18 6 6.6964 9.1411 6.1849 19 1 7.4663 9.8933 6.2738 20 6 5.5557 9.2191 6.9722 21 7 4.4839 8.5274 6.6480 22 14 5.5420 10.3057 8.4915 23 1 5.0789 11.6674 8.1220 24 1 4.6227 9.7283 9.5047 25 1 6.9133 10.3854 9.0556 26 6 6.2011 6.8142 5.5335 27 6 7.2581 5.7144 5.4523 28 1 -0.5399 0.9353 0.0004 29 1 -0.5400 -0.9353 -0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3586 2.1316 0.0896 32 1 2.6213 1.4026 -0.9314 33 1 3.7400 0.5064 1.0920 34 1 2.4773 1.2355 2.1130 35 1 5.4281 1.9014 2.1829 36 1 4.1657 2.6296 3.2047 37 1 6.5405 3.7654 3.7807 38 1 6.2471 6.4738 3.0366 39 1 7.5099 5.7455 2.0153 40 1 9.5533 4.7639 3.0630 41 1 9.7477 4.7921 4.8320 42 1 8.6857 1.3847 4.1076 43 1 9.7869 2.3286 3.0754 44 1 9.9820 2.3565 4.8444 45 1 9.2373 7.2303 3.0704 46 1 9.3946 7.2789 4.8431 47 1 7.0052 8.2342 3.1989 48 1 8.1489 9.2562 4.1046 49 1 3.6869 8.5816 7.1983 50 1 5.7466 6.8099 6.5242 51 1 5.4359 6.6383 4.7774 52 1 6.7774 4.7395 5.5323 53 1 7.9708 5.8366 6.2681 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162623160.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:41 Heat of formation + Delta-G solvation = -85.560081 kcal Electronic energy + Delta-G solvation = -31146.568338 eV Core-core repulsion = 27019.895916 eV Total energy + Delta-G solvation = -4126.672422 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.01097 -38.85218 -37.62529 -37.10141 -35.17977 -34.43954 -33.00141 -30.95213 -30.06247 -29.96280 -27.96365 -27.67905 -26.01958 -24.99597 -23.84279 -23.16173 -22.26854 -20.88210 -20.33360 -19.94205 -18.44938 -17.18295 -16.84868 -16.54631 -16.31746 -16.05184 -15.79786 -15.50412 -15.32061 -15.10069 -14.70195 -14.50392 -14.11756 -13.81509 -13.65717 -13.42975 -13.33313 -13.11493 -12.87313 -12.72917 -12.47842 -12.24197 -11.91143 -11.71714 -11.56518 -11.43050 -11.41416 -11.31938 -11.23801 -10.91008 -10.69519 -10.53458 -10.24746 -10.17171 -9.89431 -9.79885 -9.74555 -9.65967 -9.52117 -9.39533 -9.38569 -8.55161 -8.40234 -6.62556 -5.75423 -3.17650 1.93319 2.96759 3.01719 3.38859 3.45944 3.47742 3.65238 4.12655 4.51795 4.68555 4.82068 4.92072 4.95893 4.98898 5.02759 5.12019 5.15998 5.20404 5.22688 5.24016 5.28910 5.37349 5.43484 5.51809 5.52584 5.56727 5.57606 5.67118 5.70359 5.72566 5.80549 6.03810 6.07223 6.24880 6.31445 6.38698 6.40912 6.44776 6.61562 6.64463 6.72312 6.82715 6.89103 6.97089 7.02129 7.10280 7.40429 7.71277 7.82304 8.00095 8.47880 8.64572 9.24427 9.87944 10.44586 11.32870 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.010363 B = 0.002781 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2701.291766 B =10064.767866 C =11835.189710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.154 4.154 3 C -0.094 4.094 4 C 0.065 3.935 5 O -0.363 6.363 6 C 0.047 3.953 7 C 0.508 3.492 8 O -0.531 6.531 9 N -0.707 5.707 10 C 0.134 3.866 11 C -0.059 4.059 12 C 0.072 3.928 13 O -0.392 6.392 14 C 0.034 3.966 15 C -0.119 4.119 16 C 0.142 3.858 17 N -0.591 5.591 18 C -0.252 4.252 19 H 0.065 0.935 20 C 0.002 3.998 21 N -0.900 5.900 22 Si 0.901 3.099 23 H -0.287 1.287 24 H -0.290 1.290 25 H -0.280 1.280 26 C 0.170 3.830 27 C -0.125 4.125 28 H 0.099 0.901 29 H 0.098 0.902 30 H 0.109 0.891 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.050 0.950 34 H 0.052 0.948 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.408 0.592 38 H 0.084 0.916 39 H 0.055 0.945 40 H 0.046 0.954 41 H 0.051 0.949 42 H 0.082 0.918 43 H 0.038 0.962 44 H 0.040 0.960 45 H 0.054 0.946 46 H 0.066 0.934 47 H 0.023 0.977 48 H 0.056 0.944 49 H 0.253 0.747 50 H 0.086 0.914 51 H 0.022 0.978 52 H 0.054 0.946 53 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.237 -19.168 -8.075 21.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.172 4.172 3 C -0.131 4.131 4 C -0.012 4.012 5 O -0.281 6.281 6 C -0.033 4.033 7 C 0.292 3.708 8 O -0.408 6.408 9 N -0.365 5.365 10 C 0.011 3.989 11 C -0.060 4.060 12 C -0.004 4.004 13 O -0.311 6.311 14 C -0.063 4.063 15 C -0.159 4.159 16 C 0.016 3.984 17 N -0.313 5.313 18 C -0.382 4.382 19 H 0.083 0.917 20 C -0.197 4.197 21 N -0.545 5.545 22 Si 0.731 3.269 23 H -0.214 1.214 24 H -0.216 1.216 25 H -0.206 1.206 26 C 0.044 3.956 27 C -0.165 4.165 28 H 0.117 0.883 29 H 0.116 0.884 30 H 0.127 0.873 31 H 0.096 0.904 32 H 0.100 0.900 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.249 0.751 38 H 0.102 0.898 39 H 0.074 0.926 40 H 0.064 0.936 41 H 0.069 0.931 42 H 0.100 0.900 43 H 0.056 0.944 44 H 0.058 0.942 45 H 0.073 0.927 46 H 0.084 0.916 47 H 0.040 0.960 48 H 0.074 0.926 49 H 0.063 0.937 50 H 0.104 0.896 51 H 0.040 0.960 52 H 0.073 0.927 53 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.641 -18.476 -8.732 20.757 hybrid contribution 0.454 -0.126 1.355 1.435 sum 4.096 -18.602 -7.377 20.426 Atomic orbital electron populations 1.23921 0.95919 1.02086 1.00591 1.22806 0.96016 0.97963 1.00382 1.20643 0.98028 0.95898 0.98549 1.22471 0.93971 0.86210 0.98547 1.88005 1.54398 1.37116 1.48609 1.22179 0.92883 0.96380 0.91831 1.20107 0.80199 0.87951 0.82545 1.90711 1.63526 1.52304 1.34222 1.46098 1.39637 1.20076 1.30708 1.21436 0.95305 0.85247 0.96887 1.20809 0.94469 0.93767 0.96918 1.22770 0.95201 0.82731 0.99704 1.87556 1.34495 1.14362 1.94638 1.22696 0.94531 0.89327 0.99766 1.21986 0.99013 0.94143 1.00738 1.20936 0.91966 0.95260 0.90242 1.44025 1.57748 1.09426 1.20150 1.19153 1.00360 1.04758 1.13916 0.91749 1.25044 0.94694 0.99237 1.00693 1.70045 1.01722 1.44537 1.38150 0.86329 0.77288 0.80155 0.83172 1.21446 1.21636 1.20581 1.20720 0.90946 0.82045 1.01874 1.22111 0.99993 1.00224 0.94137 0.88311 0.88361 0.87252 0.90362 0.89986 0.93222 0.93019 0.90703 0.90362 0.75084 0.89754 0.92642 0.93563 0.93095 0.89956 0.94362 0.94161 0.92693 0.91558 0.95961 0.92559 0.93684 0.89589 0.96042 0.92712 0.92556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.38 14.32 29.01 0.42 -0.96 16 2 C -0.15 -1.19 9.52 -36.03 -0.34 -1.53 16 3 C -0.09 -0.89 6.03 -27.88 -0.17 -1.06 16 4 C 0.06 0.66 5.92 37.16 0.22 0.88 16 5 O -0.36 -5.22 9.88 -55.14 -0.54 -5.77 16 6 C 0.05 0.60 6.42 36.00 0.23 0.84 16 7 C 0.51 8.58 7.91 -10.99 -0.09 8.49 16 8 O -0.53 -11.43 16.50 -14.35 -0.24 -11.67 16 9 N -0.71 -10.99 4.62 -60.30 -0.28 -11.27 16 10 C 0.13 2.29 3.80 -4.04 -0.02 2.27 16 11 C -0.06 -0.92 0.51 -154.47 -0.08 -1.00 16 12 C 0.07 0.91 4.80 37.16 0.18 1.09 16 13 O -0.39 -4.60 6.73 -35.23 -0.24 -4.83 16 14 C 0.03 0.28 11.01 101.05 1.11 1.40 16 15 C -0.12 -1.92 4.90 -26.61 -0.13 -2.05 16 16 C 0.14 2.91 6.05 -3.71 -0.02 2.88 16 17 N -0.59 -14.47 3.00 -172.58 -0.52 -14.99 16 18 C -0.25 -6.85 9.58 -15.06 -0.14 -6.99 16 19 H 0.06 1.71 7.88 -52.49 -0.41 1.30 16 20 C 0.00 0.05 4.92 -17.43 -0.09 -0.03 16 21 N -0.90 -26.24 11.18 55.49 0.62 -25.62 16 22 Si 0.90 21.68 29.59 -169.99 -5.03 16.65 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 26 C 0.17 3.96 4.81 -3.93 -0.02 3.94 16 27 C -0.13 -2.27 4.57 -26.83 -0.12 -2.39 16 28 H 0.10 0.72 7.84 -52.49 -0.41 0.31 16 29 H 0.10 0.58 8.06 -52.49 -0.42 0.16 16 30 H 0.11 0.69 8.06 -52.49 -0.42 0.27 16 31 H 0.08 0.80 7.79 -51.93 -0.40 0.40 16 32 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.41 5.64 4.71 -40.82 -0.19 5.45 16 38 H 0.08 1.75 4.99 -51.93 -0.26 1.49 16 39 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 47 H 0.02 0.48 6.69 -51.93 -0.35 0.13 16 48 H 0.06 1.12 7.93 -51.93 -0.41 0.71 16 49 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 50 H 0.09 2.28 6.05 -51.93 -0.31 1.96 16 51 H 0.02 0.55 6.70 -51.93 -0.35 0.20 16 52 H 0.05 0.92 6.50 -51.93 -0.34 0.58 16 53 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 413.41 15.07 6.23 6.23 Total: -1.00 -33.21 413.41 -8.39 -41.61 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -9.34 Total: 3.89 kcal Atomic # 6 Polarization: 4.83 SS G_CDS: 0.94 Total: 5.77 kcal Atomic # 7 Polarization: -51.70 SS G_CDS: -0.18 Total: -51.87 kcal Atomic # 8 Polarization: -21.25 SS G_CDS: -1.02 Total: -22.26 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.03 Total: 16.65 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -33.21 -8.39 -41.61 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162623160.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.954 kcal (2) G-P(sol) polarization free energy of solvation -33.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds