Wall clock time and date at job start Sat Apr 11 2020 06:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50701 * 119.99987 * 2 1 4 4 C 1.52998 * 109.46604 * 125.00456 * 3 2 1 5 5 O 1.42908 * 109.46829 * 180.02562 * 4 3 2 6 6 C 1.42900 * 113.99762 * 180.02562 * 5 4 3 7 7 C 1.50697 * 109.46623 * 179.97438 * 6 5 4 8 8 O 1.21280 * 120.00383 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99790 * 179.97438 * 7 6 5 10 10 C 1.46500 * 120.00205 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.47245 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.46472 * 60.02565 * 11 10 9 13 13 O 1.42907 * 109.46904 * 299.97343 * 12 11 10 14 14 C 1.42899 * 113.99635 * 179.97438 * 13 12 11 15 15 C 1.53042 * 109.45947 * 179.97438 * 11 10 9 16 16 C 1.53192 * 109.31216 * 58.65543 * 15 11 10 17 17 N 1.46930 * 108.77834 * 54.63480 * 16 15 11 18 18 C 1.36932 * 120.62872 * 126.36699 * 17 16 15 19 19 H 1.08002 * 120.00663 * 332.45264 * 18 17 16 20 20 C 1.38819 * 119.99763 * 152.17982 * 18 17 16 21 21 N 1.31619 * 119.99653 * 343.16079 * 20 18 17 22 22 Si 1.86799 * 120.00056 * 163.16209 * 20 18 17 23 23 H 1.48498 * 109.47033 * 89.99898 * 22 20 18 24 24 H 1.48497 * 109.46906 * 209.99748 * 22 20 18 25 25 H 1.48496 * 109.47329 * 330.00182 * 22 20 18 26 26 C 1.46922 * 118.73694 * 306.64373 * 17 16 15 27 27 C 1.52760 * 109.00877 * 53.30539 * 26 17 16 28 28 H 1.07998 * 119.99678 * 359.97438 * 1 2 3 29 29 H 1.07997 * 120.00089 * 179.97438 * 1 2 3 30 30 H 1.07998 * 119.99678 * 180.02562 * 2 1 3 31 31 H 1.08998 * 109.47099 * 5.00312 * 3 2 1 32 32 H 1.08995 * 109.47044 * 245.00473 * 3 2 1 33 33 H 1.08998 * 109.47510 * 60.00108 * 4 3 2 34 34 H 1.09005 * 109.47114 * 299.99325 * 4 3 2 35 35 H 1.08996 * 109.47230 * 59.99535 * 6 5 4 36 36 H 1.08995 * 109.47075 * 299.99375 * 6 5 4 37 37 H 0.97003 * 120.00237 * 359.97438 * 9 7 6 38 38 H 1.09005 * 109.47152 * 59.99668 * 10 9 7 39 39 H 1.08995 * 109.46886 * 299.99837 * 10 9 7 40 40 H 1.09001 * 109.47035 * 59.97233 * 12 11 10 41 41 H 1.08991 * 109.47289 * 179.97438 * 12 11 10 42 42 H 1.09006 * 109.46724 * 179.97438 * 14 13 12 43 43 H 1.08996 * 109.47883 * 299.99890 * 14 13 12 44 44 H 1.09002 * 109.47085 * 60.00353 * 14 13 12 45 45 H 1.09002 * 109.49976 * 298.70465 * 15 11 10 46 46 H 1.09004 * 109.52502 * 178.62040 * 15 11 10 47 47 H 1.08997 * 109.58711 * 294.84701 * 16 15 11 48 48 H 1.09004 * 109.70548 * 174.49237 * 16 15 11 49 49 H 0.97007 * 119.99830 * 179.97438 * 21 20 18 50 50 H 1.08996 * 109.58958 * 173.14351 * 26 17 16 51 51 H 1.09005 * 109.58698 * 293.56931 * 26 17 16 52 52 H 1.08996 * 109.56719 * 185.54717 * 27 26 17 53 53 H 1.09007 * 109.38352 * 65.51663 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3329 1.1816 5 8 3.7493 2.5708 1.1820 6 6 4.6888 2.6994 2.2510 7 6 5.3807 4.0345 2.1536 8 8 5.0970 4.8007 1.2573 9 7 6.3143 4.3777 3.0631 10 6 6.9866 5.6758 2.9688 11 6 7.9926 5.8135 4.1133 12 6 9.0308 4.6939 4.0170 13 8 8.3753 3.4273 4.1093 14 6 9.2599 2.3080 4.0293 15 6 8.6952 7.1695 4.0142 16 6 7.6498 8.2876 4.0762 17 7 6.8428 8.1136 5.2917 18 6 6.6964 9.1411 6.1849 19 1 7.4663 9.8933 6.2738 20 6 5.5557 9.2191 6.9722 21 7 4.4839 8.5274 6.6480 22 14 5.5420 10.3057 8.4915 23 1 5.0789 11.6674 8.1220 24 1 4.6227 9.7283 9.5047 25 1 6.9133 10.3854 9.0556 26 6 6.2011 6.8142 5.5335 27 6 7.2581 5.7144 5.4523 28 1 -0.5399 0.9353 0.0004 29 1 -0.5400 -0.9353 -0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3586 2.1316 0.0896 32 1 2.6213 1.4026 -0.9314 33 1 3.7400 0.5064 1.0920 34 1 2.4773 1.2355 2.1130 35 1 5.4281 1.9014 2.1829 36 1 4.1657 2.6296 3.2047 37 1 6.5405 3.7654 3.7807 38 1 6.2471 6.4738 3.0366 39 1 7.5099 5.7455 2.0153 40 1 9.5533 4.7639 3.0630 41 1 9.7477 4.7921 4.8320 42 1 8.6857 1.3847 4.1076 43 1 9.7869 2.3286 3.0754 44 1 9.9820 2.3565 4.8444 45 1 9.2373 7.2303 3.0704 46 1 9.3946 7.2789 4.8431 47 1 7.0052 8.2342 3.1989 48 1 8.1489 9.2562 4.1046 49 1 3.6869 8.5816 7.1983 50 1 5.7466 6.8099 6.5242 51 1 5.4359 6.6383 4.7774 52 1 6.7774 4.7395 5.5323 53 1 7.9708 5.8366 6.2681 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162623160.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:39 Heat of formation + Delta-G solvation = -106.777899 kcal Electronic energy + Delta-G solvation = -31147.488412 eV Core-core repulsion = 27019.895916 eV Total energy + Delta-G solvation = -4127.592496 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 2.25 seconds Orbital eigenvalues (eV) -41.33329 -40.08187 -38.67138 -38.26030 -36.08277 -35.84693 -34.59125 -32.73076 -31.62614 -30.89417 -29.11870 -28.85238 -27.16108 -26.19090 -25.46330 -23.93481 -23.86454 -22.50339 -21.53836 -20.68820 -19.92930 -18.77712 -18.04059 -17.58521 -17.41982 -17.06283 -16.95962 -16.75251 -16.53688 -16.23667 -16.03375 -15.67288 -15.33942 -15.29857 -15.09607 -14.91065 -14.44717 -14.24686 -14.14511 -14.02890 -13.63902 -13.44826 -13.27033 -13.04416 -12.93492 -12.66089 -12.53241 -12.48612 -12.28425 -12.26799 -12.14467 -11.98423 -11.97851 -11.81624 -11.44293 -11.20764 -11.09547 -10.78789 -10.68295 -10.53594 -10.45772 -10.26447 -9.91140 -8.64001 -7.85143 -5.30338 1.33930 1.46519 1.47264 1.57404 1.66208 1.94005 2.52232 2.76914 3.12718 3.29669 3.68119 3.75498 3.81549 3.99769 4.00606 4.01772 4.16869 4.20310 4.26459 4.29420 4.33063 4.46209 4.48862 4.49367 4.53466 4.57288 4.64932 4.69667 4.72884 4.75074 4.86045 4.90760 4.93193 4.97618 5.02995 5.05364 5.10238 5.18280 5.25646 5.29325 5.38437 5.50119 5.61817 5.66974 5.72276 5.81399 5.86429 6.11347 6.28755 6.40724 6.76212 7.17053 7.38379 7.89169 8.40664 9.20907 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.010363 B = 0.002781 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2701.291766 B =10064.767866 C =11835.189710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.157 4.157 3 C -0.095 4.095 4 C 0.061 3.939 5 O -0.400 6.400 6 C 0.052 3.948 7 C 0.498 3.502 8 O -0.588 6.588 9 N -0.694 5.694 10 C 0.142 3.858 11 C -0.051 4.051 12 C 0.082 3.918 13 O -0.408 6.408 14 C 0.029 3.971 15 C -0.108 4.108 16 C 0.137 3.863 17 N -0.608 5.608 18 C -0.259 4.259 19 H 0.069 0.931 20 C -0.055 4.055 21 N -0.936 5.936 22 Si 0.967 3.033 23 H -0.288 1.288 24 H -0.294 1.294 25 H -0.267 1.267 26 C 0.181 3.819 27 C -0.109 4.109 28 H 0.092 0.908 29 H 0.116 0.884 30 H 0.129 0.871 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.060 0.940 35 H 0.115 0.885 36 H 0.097 0.903 37 H 0.419 0.581 38 H 0.037 0.963 39 H 0.060 0.940 40 H 0.063 0.937 41 H 0.065 0.935 42 H 0.100 0.900 43 H 0.046 0.954 44 H 0.048 0.952 45 H 0.088 0.912 46 H 0.074 0.926 47 H 0.006 0.994 48 H 0.057 0.943 49 H 0.248 0.752 50 H 0.048 0.952 51 H -0.012 1.012 52 H 0.068 0.932 53 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.567 -21.767 -7.685 23.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.175 4.175 3 C -0.133 4.133 4 C -0.014 4.014 5 O -0.319 6.319 6 C -0.027 4.027 7 C 0.285 3.715 8 O -0.468 6.468 9 N -0.353 5.353 10 C 0.018 3.982 11 C -0.052 4.052 12 C 0.006 3.994 13 O -0.327 6.327 14 C -0.067 4.067 15 C -0.147 4.147 16 C 0.011 3.989 17 N -0.332 5.332 18 C -0.390 4.390 19 H 0.086 0.914 20 C -0.250 4.250 21 N -0.583 5.583 22 Si 0.795 3.205 23 H -0.215 1.215 24 H -0.220 1.220 25 H -0.192 1.192 26 C 0.056 3.944 27 C -0.148 4.148 28 H 0.110 0.890 29 H 0.134 0.866 30 H 0.147 0.853 31 H 0.079 0.921 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.078 0.922 35 H 0.132 0.868 36 H 0.115 0.885 37 H 0.262 0.738 38 H 0.055 0.945 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.118 0.882 43 H 0.064 0.936 44 H 0.067 0.933 45 H 0.106 0.894 46 H 0.093 0.907 47 H 0.024 0.976 48 H 0.075 0.925 49 H 0.057 0.943 50 H 0.067 0.933 51 H 0.006 0.994 52 H 0.087 0.913 53 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.020 -21.110 -8.327 23.478 hybrid contribution -0.311 0.690 1.159 1.384 sum 5.708 -20.420 -7.168 22.382 Atomic orbital electron populations 1.24088 0.96006 1.02673 0.99929 1.22831 0.96106 0.97645 1.00917 1.20647 0.97783 0.96499 0.98324 1.22679 0.94374 0.85380 0.99016 1.87966 1.55168 1.39473 1.49337 1.22237 0.93590 0.94538 0.92309 1.20990 0.79814 0.89119 0.81571 1.90680 1.65238 1.54366 1.36558 1.46034 1.39092 1.19519 1.30634 1.21217 0.94484 0.84717 0.97824 1.20699 0.94746 0.95383 0.94379 1.22549 0.93670 0.81977 1.01239 1.87488 1.35694 1.14719 1.94833 1.22905 0.94685 0.88555 1.00553 1.21843 0.97624 0.92410 1.02861 1.21091 0.92337 0.97438 0.88014 1.44301 1.58207 1.09414 1.21274 1.19531 1.00169 1.05135 1.14121 0.91370 1.25828 0.94438 1.01096 1.03608 1.70226 1.02229 1.46583 1.39236 0.85285 0.77565 0.78097 0.79541 1.21481 1.22026 1.19207 1.20445 0.91842 0.83700 0.98442 1.21866 0.98546 0.98493 0.95942 0.88979 0.86619 0.85349 0.92117 0.90559 0.90676 0.92199 0.86781 0.88487 0.73782 0.94480 0.92176 0.91846 0.91697 0.88173 0.93565 0.93325 0.89399 0.90699 0.97568 0.92472 0.94341 0.93320 0.99445 0.91302 0.92340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.55 14.32 67.77 0.97 -1.58 16 2 C -0.16 -2.20 9.52 25.64 0.24 -1.96 16 3 C -0.10 -1.77 6.03 29.85 0.18 -1.59 16 4 C 0.06 1.16 5.92 71.98 0.43 1.58 16 5 O -0.40 -11.31 9.88 -129.94 -1.28 -12.59 16 6 C 0.05 1.26 6.42 71.24 0.46 1.71 16 7 C 0.50 16.88 7.91 87.66 0.69 17.57 16 8 O -0.59 -26.32 16.50 16.01 0.26 -26.06 16 9 N -0.69 -21.18 4.62 -463.06 -2.14 -23.32 16 10 C 0.14 4.84 3.80 86.38 0.33 5.17 16 11 C -0.05 -1.52 0.51 -52.16 -0.03 -1.55 16 12 C 0.08 1.76 4.80 71.98 0.35 2.10 16 13 O -0.41 -8.09 6.73 -148.98 -1.00 -9.09 16 14 C 0.03 0.37 11.01 113.37 1.25 1.62 16 15 C -0.11 -3.29 4.90 30.67 0.15 -3.14 16 16 C 0.14 5.65 6.05 86.36 0.52 6.17 16 17 N -0.61 -30.71 3.00 -699.92 -2.10 -32.81 16 18 C -0.26 -14.38 9.58 84.04 0.81 -13.57 16 19 H 0.07 3.65 7.88 -2.91 -0.02 3.63 16 20 C -0.05 -3.11 4.92 84.86 0.42 -2.69 16 21 N -0.94 -57.06 11.18 21.65 0.24 -56.82 16 22 Si 0.97 45.52 29.59 68.60 2.03 47.55 16 23 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 24 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 25 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 26 C 0.18 8.81 4.81 86.22 0.41 9.23 16 27 C -0.11 -3.90 4.57 30.53 0.14 -3.76 16 28 H 0.09 1.33 7.84 -2.91 -0.02 1.31 16 29 H 0.12 1.14 8.06 -2.91 -0.02 1.12 16 30 H 0.13 1.30 8.06 -2.91 -0.02 1.28 16 31 H 0.06 1.30 7.79 -2.39 -0.02 1.29 16 32 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.08 1.02 8.14 -2.39 -0.02 1.01 16 34 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 35 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.42 10.81 4.71 -92.71 -0.44 10.37 16 38 H 0.04 1.63 4.99 -2.38 -0.01 1.62 16 39 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.10 0.93 8.14 -2.38 -0.02 0.91 16 43 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 44 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 45 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 46 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 47 H 0.01 0.28 6.69 -2.39 -0.02 0.27 16 48 H 0.06 2.30 7.93 -2.39 -0.02 2.28 16 49 H 0.25 14.66 8.31 -92.70 -0.77 13.89 16 50 H 0.05 2.71 6.05 -2.39 -0.01 2.69 16 51 H -0.01 -0.68 6.70 -2.38 -0.02 -0.69 16 52 H 0.07 2.23 6.50 -2.39 -0.02 2.22 16 53 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 Total: -1.00 -77.55 413.41 3.76 -73.79 By element: Atomic # 1 Polarization: 23.60 SS G_CDS: 0.44 Total: 24.04 kcal Atomic # 6 Polarization: 8.00 SS G_CDS: 7.32 Total: 15.31 kcal Atomic # 7 Polarization: -108.95 SS G_CDS: -4.00 Total: -112.95 kcal Atomic # 8 Polarization: -45.72 SS G_CDS: -2.02 Total: -47.74 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Total: -77.55 3.76 -73.79 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162623160.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.991 kcal (2) G-P(sol) polarization free energy of solvation -77.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.25 seconds