Wall clock time and date at job start Sat Apr 11 2020 06:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42901 * 114.00449 * 2 1 4 4 H 1.09005 * 109.51823 * 330.12391 * 3 2 1 5 5 C 1.53094 * 109.57615 * 90.27822 * 3 2 1 6 6 O 1.42903 * 109.41524 * 177.54957 * 5 3 2 7 7 C 1.42901 * 114.09548 * 298.84275 * 6 5 3 8 8 C 1.53094 * 109.41850 * 61.15704 * 7 6 5 9 9 C 1.53175 * 109.16316 * 302.39393 * 8 7 6 10 10 H 1.09000 * 109.61488 * 297.06761 * 9 8 7 11 11 C 1.52997 * 109.54455 * 176.84479 * 9 8 7 12 12 C 1.50704 * 109.47127 * 65.44207 * 11 9 8 13 13 O 1.21280 * 119.99680 * 0.02562 * 12 11 9 14 14 N 1.34778 * 120.00263 * 180.02562 * 12 11 9 15 15 C 1.46500 * 120.00027 * 184.93374 * 14 12 11 16 16 C 1.52997 * 109.47054 * 175.01337 * 15 14 12 17 17 C 1.52997 * 109.47268 * 183.98375 * 16 15 14 18 18 C 1.53002 * 115.54753 * 65.33093 * 17 16 15 19 19 N 1.46500 * 109.47280 * 65.04159 * 18 17 16 20 20 C 1.36939 * 120.00379 * 185.02950 * 19 18 17 21 21 H 1.08004 * 119.99545 * 4.98072 * 20 19 18 22 22 C 1.38808 * 120.00101 * 184.98881 * 20 19 18 23 23 N 1.31620 * 119.99835 * 184.71110 * 22 20 19 24 24 Si 1.86798 * 120.00103 * 4.70785 * 22 20 19 25 25 H 1.48492 * 109.47108 * 94.28039 * 24 22 20 26 26 H 1.48504 * 109.47019 * 214.27780 * 24 22 20 27 27 H 1.48502 * 109.47220 * 334.27620 * 24 22 20 28 28 C 1.52999 * 117.50036 * 279.66302 * 17 16 15 29 29 C 1.52995 * 117.50036 * 210.99808 * 17 16 15 30 30 H 1.08999 * 109.47197 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47261 * 300.00668 * 1 2 3 32 32 H 1.09008 * 109.46741 * 60.00532 * 1 2 3 33 33 H 1.08997 * 109.47849 * 297.52818 * 5 3 2 34 34 H 1.08998 * 109.48083 * 57.56238 * 5 3 2 35 35 H 1.09003 * 109.48116 * 181.14277 * 7 6 5 36 36 H 1.09000 * 109.48299 * 301.16311 * 7 6 5 37 37 H 1.09004 * 109.52233 * 182.48306 * 8 7 6 38 38 H 1.09007 * 109.52097 * 62.29688 * 8 7 6 39 39 H 1.08998 * 109.47308 * 305.44267 * 11 9 8 40 40 H 1.08996 * 109.47275 * 185.43820 * 11 9 8 41 41 H 0.96999 * 119.99922 * 4.92952 * 14 12 11 42 42 H 1.09002 * 109.47188 * 295.01611 * 15 14 12 43 43 H 1.08998 * 109.47045 * 55.01651 * 15 14 12 44 44 H 1.08999 * 109.47498 * 303.99164 * 16 15 14 45 45 H 1.09003 * 109.47016 * 63.98951 * 16 15 14 46 46 H 1.08993 * 109.47287 * 185.04532 * 18 17 16 47 47 H 1.09004 * 109.47136 * 305.04660 * 18 17 16 48 48 H 0.96999 * 119.99851 * 5.03756 * 19 18 17 49 49 H 0.96997 * 119.99984 * 179.97438 * 23 22 20 50 50 H 1.08989 * 117.50027 * 359.97438 * 28 17 16 51 51 H 1.09001 * 117.49764 * 145.02282 * 28 17 16 52 52 H 1.09011 * 117.49849 * 214.97919 * 29 17 16 53 53 H 1.08998 * 117.50016 * 0.02562 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3446 2.0005 -0.5118 5 6 2.2254 1.7712 1.4424 6 8 2.8588 3.0521 1.4386 7 6 4.1463 3.0644 0.8185 8 6 4.0084 2.6506 -0.6490 9 6 3.3607 1.2644 -0.7218 10 1 4.0090 0.5319 -0.2410 11 6 3.1468 0.8757 -2.1860 12 6 4.4833 0.7160 -2.8638 13 8 5.5062 0.8950 -2.2372 14 7 4.5419 0.3743 -4.1662 15 6 5.8380 0.1135 -4.7974 16 6 5.6182 -0.3714 -6.2318 17 6 6.9651 -0.7383 -6.8582 18 6 7.6864 -1.9281 -6.2217 19 7 6.8991 -3.1456 -6.4314 20 6 7.2960 -4.3247 -5.8592 21 1 8.1425 -4.3415 -5.1887 22 6 6.6104 -5.4983 -6.1410 23 7 6.9324 -6.6137 -5.5208 24 14 5.2307 -5.4946 -7.4003 25 1 5.7696 -5.8909 -8.7260 26 1 4.1793 -6.4578 -6.9854 27 1 4.6464 -4.1324 -7.4904 28 6 7.8276 0.4041 -7.3985 29 6 7.1182 -0.5447 -8.3681 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.2627 1.8433 1.9484 34 1 2.8582 1.0542 1.9654 35 1 4.5675 4.0681 0.8752 36 1 4.8044 2.3645 1.3334 37 1 4.9946 2.6167 -1.1121 38 1 3.3832 3.3729 -1.1739 39 1 2.5752 1.6556 -2.6892 40 1 2.5994 -0.0655 -2.2359 41 1 3.7260 0.3011 -4.6856 42 1 6.4271 1.0305 -4.8100 43 1 6.3696 -0.6523 -4.2326 44 1 4.9703 -1.2478 -6.2239 45 1 5.1501 0.4213 -6.8156 46 1 8.6676 -2.0462 -6.6813 47 1 7.8048 -1.7516 -5.1526 48 1 6.0968 -3.1166 -6.9757 49 1 6.4530 -7.4337 -5.7174 50 1 7.4353 1.4169 -7.3082 51 1 8.9089 0.3078 -7.3011 52 1 7.7333 -1.2647 -8.9080 53 1 6.2596 -0.1555 -8.9152 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165441136.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:54 Heat of formation + Delta-G solvation = -127.124649 kcal Electronic energy + Delta-G solvation = -30339.391283 eV Core-core repulsion = 26210.916486 eV Total energy + Delta-G solvation = -4128.474797 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.36968 -40.30710 -39.52945 -38.27741 -36.21397 -35.84587 -35.16039 -33.23619 -31.71977 -31.32592 -29.57462 -28.08593 -27.49509 -25.33039 -24.29555 -24.11675 -23.84764 -22.94880 -21.64437 -21.16896 -20.38158 -19.22993 -18.21676 -17.74066 -17.37597 -17.16946 -16.87386 -16.64902 -16.58180 -16.38769 -16.11189 -15.90895 -15.59640 -15.28245 -15.03192 -14.81118 -14.68687 -14.34926 -14.13922 -14.01076 -13.87095 -13.54439 -13.45071 -13.21864 -13.09932 -12.86578 -12.63887 -12.47636 -12.29150 -12.23860 -12.15636 -12.02810 -11.92390 -11.80484 -11.74327 -11.44067 -11.11440 -11.06986 -10.98678 -10.83243 -10.59923 -10.20116 -10.01590 -9.28638 -8.04223 -5.37550 1.34325 1.41324 1.48232 1.65753 2.20602 2.47342 2.55608 2.84381 3.05510 3.26182 3.56158 3.58989 3.70180 3.77572 3.79879 3.90114 3.95847 4.05036 4.07336 4.12642 4.18838 4.30486 4.37580 4.41272 4.43469 4.46028 4.49814 4.57585 4.63369 4.70213 4.73190 4.80437 4.84297 4.84692 4.90076 4.92284 4.96055 5.01320 5.08375 5.12774 5.18739 5.23443 5.26043 5.31835 5.34950 5.50809 5.73796 5.99325 6.19982 6.31480 6.58766 7.07416 7.29445 7.83057 8.06265 9.17842 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.011159 B = 0.002517 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2508.636651 B =11120.712713 C =12587.917315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.400 6.400 3 C 0.067 3.933 4 H 0.089 0.911 5 C 0.039 3.961 6 O -0.389 6.389 7 C 0.056 3.944 8 C -0.145 4.145 9 C -0.072 4.072 10 H 0.057 0.943 11 C -0.125 4.125 12 C 0.507 3.493 13 O -0.580 6.580 14 N -0.720 5.720 15 C 0.130 3.870 16 C -0.076 4.076 17 C -0.147 4.147 18 C 0.189 3.811 19 N -0.749 5.749 20 C -0.237 4.237 21 H 0.047 0.953 22 C -0.067 4.067 23 N -0.986 5.986 24 Si 0.964 3.036 25 H -0.281 1.281 26 H -0.295 1.295 27 H -0.244 1.244 28 C -0.150 4.150 29 C -0.163 4.163 30 H 0.092 0.908 31 H 0.053 0.947 32 H 0.057 0.943 33 H 0.110 0.890 34 H 0.048 0.952 35 H 0.113 0.887 36 H 0.045 0.955 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.124 0.876 40 H 0.105 0.895 41 H 0.415 0.585 42 H 0.068 0.932 43 H 0.034 0.966 44 H 0.061 0.939 45 H 0.100 0.900 46 H 0.017 0.983 47 H 0.017 0.983 48 H 0.370 0.630 49 H 0.258 0.742 50 H 0.118 0.882 51 H 0.092 0.908 52 H 0.083 0.917 53 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.774 25.456 4.711 30.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.319 6.319 3 C 0.009 3.991 4 H 0.107 0.893 5 C -0.038 4.038 6 O -0.308 6.308 7 C -0.020 4.020 8 C -0.183 4.183 9 C -0.091 4.091 10 H 0.075 0.925 11 C -0.164 4.164 12 C 0.295 3.705 13 O -0.460 6.460 14 N -0.373 5.373 15 C 0.006 3.994 16 C -0.114 4.114 17 C -0.148 4.148 18 C 0.063 3.937 19 N -0.395 5.395 20 C -0.368 4.368 21 H 0.065 0.935 22 C -0.258 4.258 23 N -0.636 5.636 24 Si 0.790 3.210 25 H -0.207 1.207 26 H -0.222 1.222 27 H -0.169 1.169 28 C -0.187 4.187 29 C -0.200 4.200 30 H 0.110 0.890 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.128 0.872 34 H 0.067 0.933 35 H 0.131 0.869 36 H 0.063 0.937 37 H 0.099 0.901 38 H 0.102 0.898 39 H 0.142 0.858 40 H 0.124 0.876 41 H 0.251 0.749 42 H 0.086 0.914 43 H 0.053 0.947 44 H 0.080 0.920 45 H 0.119 0.881 46 H 0.035 0.965 47 H 0.035 0.965 48 H 0.204 0.796 49 H 0.067 0.933 50 H 0.137 0.863 51 H 0.111 0.889 52 H 0.101 0.899 53 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -14.873 25.438 5.353 29.949 hybrid contribution -0.495 -1.282 -0.591 1.496 sum -15.368 24.157 4.762 29.024 Atomic orbital electron populations 1.23035 0.79318 1.03813 1.01286 1.87945 1.21578 1.27327 1.95072 1.22765 0.94673 0.85389 0.96263 0.89324 1.23089 0.99050 0.85241 0.96390 1.87916 1.32900 1.30416 1.79521 1.22725 0.84274 1.03078 0.91925 1.22300 1.02786 0.95314 0.97890 1.21010 0.95456 0.98096 0.94544 0.92494 1.21662 0.93822 1.05656 0.95266 1.21214 0.92205 0.75298 0.81821 1.90657 1.38315 1.51804 1.65247 1.45952 1.10303 1.70108 1.10903 1.21140 0.85170 0.99799 0.93272 1.21134 0.95001 1.01474 0.93803 1.21445 0.98061 0.98004 0.97272 1.20222 0.92745 0.84089 0.96644 1.42631 1.29806 1.05296 1.61764 1.19010 1.11405 0.86264 1.20113 0.93536 1.25603 1.02877 0.94764 1.02525 1.69917 1.46054 1.00435 1.47243 0.85274 0.78661 0.78266 0.78755 1.20719 1.22156 1.16878 1.23083 0.98630 0.95028 1.01952 1.23076 1.03626 1.02516 0.90804 0.88987 0.92841 0.92428 0.87167 0.93341 0.86949 0.93695 0.90064 0.89784 0.85843 0.87630 0.74882 0.91353 0.94706 0.92042 0.88122 0.96549 0.96516 0.79611 0.93302 0.86331 0.88937 0.89877 0.86667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 10.82 113.37 1.23 1.47 16 2 O -0.40 -7.30 9.74 -148.98 -1.45 -8.75 16 3 C 0.07 1.10 2.21 30.68 0.07 1.16 16 4 H 0.09 1.11 7.79 -2.38 -0.02 1.10 16 5 C 0.04 0.66 6.47 72.01 0.47 1.13 16 6 O -0.39 -7.42 10.77 -148.98 -1.60 -9.02 16 7 C 0.06 1.00 6.84 72.01 0.49 1.49 16 8 C -0.15 -2.67 5.13 30.68 0.16 -2.51 16 9 C -0.07 -1.43 1.64 -10.68 -0.02 -1.45 16 10 H 0.06 1.51 7.95 -2.39 -0.02 1.49 16 11 C -0.12 -2.18 5.12 29.85 0.15 -2.03 16 12 C 0.51 12.67 7.56 87.66 0.66 13.34 16 13 O -0.58 -19.46 14.01 -3.03 -0.04 -19.50 16 14 N -0.72 -15.78 5.55 -463.06 -2.57 -18.35 16 15 C 0.13 3.44 5.59 86.38 0.48 3.93 16 16 C -0.08 -1.81 5.13 30.59 0.16 -1.65 16 17 C -0.15 -4.06 1.53 -52.18 -0.08 -4.14 16 18 C 0.19 7.45 5.92 86.38 0.51 7.96 16 19 N -0.75 -35.52 5.23 -343.45 -1.80 -37.32 16 20 C -0.24 -14.00 10.47 84.03 0.88 -13.12 16 21 H 0.05 3.07 8.06 -2.91 -0.02 3.04 16 22 C -0.07 -4.00 5.50 84.86 0.47 -3.54 16 23 N -0.99 -64.75 13.97 21.65 0.30 -64.45 16 24 Si 0.96 45.64 28.00 68.60 1.92 47.56 16 25 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 26 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 27 H -0.24 -10.05 6.16 99.48 0.61 -9.44 16 28 C -0.15 -3.18 9.94 30.62 0.30 -2.87 16 29 C -0.16 -3.79 9.94 30.62 0.30 -3.49 16 30 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.05 0.46 7.96 -2.39 -0.02 0.44 16 32 H 0.06 0.47 8.09 -2.38 -0.02 0.46 16 33 H 0.11 1.43 7.96 -2.39 -0.02 1.42 16 34 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.08 1.87 6.07 -2.38 -0.01 1.85 16 38 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 39 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.11 1.85 7.65 -2.39 -0.02 1.83 16 41 H 0.41 6.21 8.48 -92.71 -0.79 5.43 16 42 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.03 1.23 6.82 -2.39 -0.02 1.22 16 44 H 0.06 1.68 7.73 -2.39 -0.02 1.66 16 45 H 0.10 1.65 8.09 -2.39 -0.02 1.63 16 46 H 0.02 0.68 8.09 -2.39 -0.02 0.66 16 47 H 0.02 0.72 6.89 -2.38 -0.02 0.71 16 48 H 0.37 16.41 5.07 -92.71 -0.47 15.94 16 49 H 0.26 16.05 8.31 -92.71 -0.77 15.28 16 50 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 51 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 52 H 0.08 2.19 8.14 -2.38 -0.02 2.17 16 53 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -79.08 418.05 0.54 -78.54 By element: Atomic # 1 Polarization: 36.08 SS G_CDS: -0.46 Total: 35.63 kcal Atomic # 6 Polarization: -10.55 SS G_CDS: 6.24 Total: -4.32 kcal Atomic # 7 Polarization: -116.06 SS G_CDS: -4.06 Total: -120.13 kcal Atomic # 8 Polarization: -34.18 SS G_CDS: -3.10 Total: -37.28 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 1.92 Total: 47.56 kcal Total: -79.08 0.54 -78.54 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165441136.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.589 kcal (2) G-P(sol) polarization free energy of solvation -79.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds