Wall clock time and date at job start Sat Apr 11 2020 06:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42900 * 109.47515 * 2 1 4 4 C 1.42896 * 113.99976 * 184.97566 * 3 2 1 5 5 H 1.08998 * 109.47346 * 25.20314 * 4 3 2 6 6 C 1.50701 * 109.47363 * 265.20097 * 4 3 2 7 7 O 1.21286 * 119.99458 * 0.02562 * 6 4 3 8 8 N 1.34769 * 120.00282 * 180.02562 * 6 4 3 9 9 C 1.46499 * 120.00443 * 180.27687 * 8 6 4 10 10 C 1.52993 * 109.47398 * 179.72041 * 9 8 6 11 11 C 1.53003 * 109.46894 * 174.96366 * 10 9 8 12 12 C 1.53002 * 115.54731 * 65.15293 * 11 10 9 13 13 N 1.46502 * 109.47317 * 65.04411 * 12 11 10 14 14 C 1.36938 * 119.99734 * 185.01756 * 13 12 11 15 15 H 1.07999 * 120.00100 * 0.02562 * 14 13 12 16 16 C 1.38812 * 119.99674 * 180.02562 * 14 13 12 17 17 N 1.31620 * 120.00079 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 119.99779 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.47263 * 90.00221 * 18 16 14 20 20 H 1.48508 * 109.47088 * 209.99892 * 18 16 14 21 21 H 1.48501 * 109.47241 * 329.99515 * 18 16 14 22 22 C 1.52999 * 117.50210 * 279.47990 * 11 10 9 23 23 C 1.53004 * 117.49959 * 210.81598 * 11 10 9 24 24 C 1.53001 * 109.47071 * 145.20151 * 4 3 2 25 25 H 1.08994 * 110.80456 * 69.42026 * 24 4 3 26 26 C 1.54815 * 110.90634 * 305.79168 * 24 4 3 27 27 C 1.54101 * 104.18816 * 220.91713 * 26 24 4 28 28 O 1.43743 * 107.29355 * 357.97651 * 27 26 24 29 29 C 1.44387 * 106.97846 * 26.50723 * 28 27 26 30 30 H 1.09004 * 109.46843 * 59.99774 * 1 2 3 31 31 H 1.08998 * 109.47314 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.46631 * 300.00505 * 1 2 3 33 33 H 1.08997 * 109.46976 * 239.99164 * 2 1 3 34 34 H 1.09004 * 109.46843 * 120.00226 * 2 1 3 35 35 H 0.97005 * 119.99710 * 359.97438 * 8 6 4 36 36 H 1.09007 * 109.47083 * 299.72653 * 9 8 6 37 37 H 1.09004 * 109.46978 * 59.72054 * 9 8 6 38 38 H 1.08993 * 109.47407 * 294.96617 * 10 9 8 39 39 H 1.09006 * 109.46857 * 54.97118 * 10 9 8 40 40 H 1.09006 * 109.47199 * 185.04655 * 12 11 10 41 41 H 1.09003 * 109.47194 * 305.04094 * 12 11 10 42 42 H 0.96995 * 119.99604 * 5.01743 * 13 12 11 43 43 H 0.97000 * 120.00079 * 180.02562 * 17 16 14 44 44 H 1.08997 * 117.49516 * 359.97438 * 22 11 10 45 45 H 1.09001 * 117.49864 * 145.02194 * 22 11 10 46 46 H 1.08998 * 117.49824 * 214.98293 * 23 11 10 47 47 H 1.09000 * 117.49917 * 359.97438 * 23 11 10 48 48 H 1.09000 * 110.48921 * 339.59843 * 26 24 4 49 49 H 1.09003 * 110.48226 * 102.24396 * 26 24 4 50 50 H 1.09002 * 109.87579 * 117.39270 * 27 26 24 51 51 H 1.08996 * 109.88161 * 238.54673 * 27 26 24 52 52 H 1.08996 * 110.61648 * 201.44306 * 29 28 27 53 53 H 1.09001 * 110.61554 * 78.43913 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0065 1.3472 0.0000 4 6 3.4263 1.4616 -0.1132 5 1 3.8236 0.5769 -0.6108 6 6 4.0321 1.5793 1.2617 7 8 3.3181 1.5660 2.2420 8 7 5.3671 1.6993 1.4019 9 6 5.9565 1.8076 2.7386 10 6 7.4771 1.9251 2.6176 11 6 8.0820 2.1640 4.0025 12 6 7.9212 1.0150 5.0000 13 7 8.6700 -0.1516 4.5260 14 6 8.5908 -1.3381 5.2051 15 1 7.9761 -1.4139 6.0899 16 6 9.3007 -2.4433 4.7564 17 7 10.0495 -2.3510 3.6779 18 14 9.1922 -4.0620 5.6823 19 1 8.0726 -4.8704 5.1365 20 1 10.4656 -4.8094 5.5237 21 1 8.9523 -3.7931 7.1229 22 6 8.0408 3.5901 4.5551 23 6 9.3668 2.9913 4.0792 24 6 3.7740 2.7065 -0.9320 25 1 3.5352 3.6138 -0.3773 26 6 3.0492 2.6883 -2.2998 27 6 4.1085 3.1994 -3.2955 28 8 5.2880 3.5183 -2.5382 29 6 5.2652 2.6919 -1.3545 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5140 0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 5.9381 1.7095 0.6177 36 1 5.5624 2.6923 3.2389 37 1 5.7058 0.9199 3.3193 38 1 7.8806 1.0031 2.1990 39 1 7.7261 2.7607 1.9634 40 1 8.3047 1.3221 5.9730 41 1 6.8659 0.7573 5.0903 42 1 9.2217 -0.0835 3.7312 43 1 10.5453 -3.1234 3.3640 44 1 7.5831 4.3582 3.9317 45 1 7.8994 3.7098 5.6292 46 1 10.0971 2.7173 4.8405 47 1 9.7813 3.3651 3.1429 48 1 2.7429 1.6740 -2.5559 49 1 2.1874 3.3555 -2.2837 50 1 4.3358 2.4229 -4.0259 51 1 3.7409 4.0916 -3.8023 52 1 5.8899 3.1240 -0.5727 53 1 5.5880 1.6774 -1.5884 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166408796.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:08 Heat of formation + Delta-G solvation = -121.908905 kcal Electronic energy + Delta-G solvation = -30761.543411 eV Core-core repulsion = 26633.294785 eV Total energy + Delta-G solvation = -4128.248625 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.61562 -40.07057 -39.55576 -38.57611 -36.15830 -35.79532 -34.32753 -32.78545 -31.90875 -31.56719 -30.21122 -27.88799 -27.37117 -24.80419 -24.64021 -23.82409 -23.43320 -22.97195 -22.02034 -21.62065 -20.03510 -19.11876 -18.71231 -18.12895 -17.51906 -17.05486 -16.80190 -16.70496 -16.44301 -16.23913 -16.08116 -15.93097 -15.47428 -15.21476 -15.01722 -14.80153 -14.72835 -14.33531 -14.20286 -13.82824 -13.48132 -13.29631 -13.17017 -13.03711 -12.90823 -12.80326 -12.71667 -12.52479 -12.35939 -12.28885 -12.27239 -12.19076 -12.15081 -11.94254 -11.85531 -11.64621 -11.41937 -11.09955 -10.90574 -10.68352 -10.61096 -10.35243 -10.17885 -8.97495 -7.95368 -5.22600 1.43023 1.45372 1.46269 1.54764 1.89684 2.51479 2.53721 2.88801 2.94075 3.37186 3.40872 3.60917 3.70262 3.80228 3.84499 3.90917 3.91535 3.99394 4.06337 4.12535 4.13494 4.22788 4.25152 4.28712 4.41305 4.43635 4.44157 4.48821 4.61221 4.64872 4.76570 4.82823 4.84465 4.88958 4.92779 4.97144 5.00381 5.04614 5.09186 5.14788 5.17279 5.22954 5.25789 5.31431 5.35122 5.39188 5.48125 5.84439 5.95800 6.27188 6.43820 7.11442 7.34508 8.10467 8.36928 9.27698 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.009608 B = 0.002801 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2913.574420 B = 9994.197264 C =11219.375855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.046 3.954 3 O -0.367 6.367 4 C 0.091 3.909 5 H 0.114 0.886 6 C 0.484 3.516 7 O -0.572 6.572 8 N -0.715 5.715 9 C 0.132 3.868 10 C -0.075 4.075 11 C -0.141 4.141 12 C 0.187 3.813 13 N -0.734 5.734 14 C -0.246 4.246 15 H 0.068 0.932 16 C -0.069 4.069 17 N -0.964 5.964 18 Si 0.968 3.032 19 H -0.288 1.288 20 H -0.292 1.292 21 H -0.274 1.274 22 C -0.151 4.151 23 C -0.163 4.163 24 C -0.113 4.113 25 H 0.086 0.914 26 C -0.134 4.134 27 C 0.040 3.960 28 O -0.391 6.391 29 C 0.043 3.957 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.048 0.952 33 H 0.076 0.924 34 H 0.031 0.969 35 H 0.411 0.589 36 H 0.069 0.931 37 H 0.038 0.962 38 H 0.059 0.941 39 H 0.096 0.904 40 H 0.011 0.989 41 H 0.016 0.984 42 H 0.377 0.623 43 H 0.251 0.749 44 H 0.116 0.884 45 H 0.094 0.906 46 H 0.079 0.921 47 H 0.110 0.890 48 H 0.089 0.911 49 H 0.086 0.914 50 H 0.074 0.926 51 H 0.095 0.905 52 H 0.103 0.897 53 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.242 12.773 -16.122 25.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.030 4.030 3 O -0.285 6.285 4 C 0.030 3.970 5 H 0.132 0.868 6 C 0.270 3.730 7 O -0.451 6.451 8 N -0.370 5.370 9 C 0.008 3.992 10 C -0.113 4.113 11 C -0.142 4.142 12 C 0.061 3.939 13 N -0.376 5.376 14 C -0.378 4.378 15 H 0.086 0.914 16 C -0.262 4.262 17 N -0.614 5.614 18 Si 0.797 3.203 19 H -0.215 1.215 20 H -0.219 1.219 21 H -0.199 1.199 22 C -0.188 4.188 23 C -0.200 4.200 24 C -0.132 4.132 25 H 0.104 0.896 26 C -0.171 4.171 27 C -0.036 4.036 28 O -0.311 6.311 29 C -0.034 4.034 30 H 0.092 0.908 31 H 0.107 0.893 32 H 0.067 0.933 33 H 0.094 0.906 34 H 0.049 0.951 35 H 0.249 0.751 36 H 0.087 0.913 37 H 0.056 0.944 38 H 0.078 0.922 39 H 0.115 0.885 40 H 0.029 0.971 41 H 0.034 0.966 42 H 0.210 0.790 43 H 0.060 0.940 44 H 0.135 0.865 45 H 0.112 0.888 46 H 0.098 0.902 47 H 0.128 0.872 48 H 0.108 0.892 49 H 0.104 0.896 50 H 0.092 0.908 51 H 0.113 0.887 52 H 0.121 0.879 53 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -14.796 12.964 -15.325 24.937 hybrid contribution 0.553 -1.612 0.527 1.784 sum -14.243 11.352 -14.798 23.468 Atomic orbital electron populations 1.21722 0.92190 1.03428 1.02875 1.22816 0.97059 0.82613 1.00484 1.87966 1.18441 1.28056 1.94052 1.21989 0.83475 1.01022 0.90563 0.86845 1.21926 0.82514 0.75705 0.92862 1.90703 1.61688 1.50641 1.42032 1.46165 1.06925 1.73916 1.10014 1.21163 0.93438 1.00963 0.83650 1.21091 0.92264 1.02865 0.95036 1.21411 1.03634 0.92567 0.96563 1.20240 0.93857 0.85917 0.93900 1.42401 1.55631 1.07191 1.32426 1.19581 1.22178 0.89338 1.06736 0.91435 1.25453 1.00295 1.01215 0.99253 1.69794 1.34929 1.30546 1.26148 0.85227 0.76569 0.80132 0.78365 1.21544 1.21853 1.19868 1.23093 1.00047 0.93928 1.01721 1.22993 0.90740 1.02794 1.03469 1.22736 0.96988 0.96640 0.96883 0.89565 1.22846 0.98914 1.03758 0.91621 1.23397 0.84192 1.01742 0.94287 1.88903 1.44064 1.62968 1.35119 1.23830 0.94455 0.96941 0.88149 0.90755 0.89258 0.93259 0.90625 0.95097 0.75058 0.91320 0.94381 0.92192 0.88523 0.97112 0.96610 0.79036 0.93970 0.86547 0.88759 0.90242 0.87173 0.89217 0.89553 0.90812 0.88695 0.87914 0.89755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 10.28 71.98 0.74 -1.50 16 2 C 0.05 0.88 6.52 71.98 0.47 1.35 16 3 O -0.37 -8.31 9.05 -129.94 -1.18 -9.48 16 4 C 0.09 1.79 2.11 29.85 0.06 1.85 16 5 H 0.11 1.68 7.48 -2.39 -0.02 1.66 16 6 C 0.48 13.33 7.23 87.66 0.63 13.97 16 7 O -0.57 -21.54 16.50 15.99 0.26 -21.28 16 8 N -0.71 -17.20 5.19 -463.07 -2.40 -19.60 16 9 C 0.13 3.82 5.40 86.38 0.47 4.29 16 10 C -0.07 -2.05 5.13 30.59 0.16 -1.89 16 11 C -0.14 -4.33 1.53 -52.18 -0.08 -4.41 16 12 C 0.19 7.71 5.93 86.38 0.51 8.22 16 13 N -0.73 -37.37 5.45 -343.43 -1.87 -39.24 16 14 C -0.25 -14.01 9.99 84.03 0.84 -13.17 16 15 H 0.07 3.77 7.83 -2.91 -0.02 3.75 16 16 C -0.07 -4.01 5.50 84.86 0.47 -3.54 16 17 N -0.96 -58.33 13.06 21.65 0.28 -58.04 16 18 Si 0.97 46.64 29.55 68.60 2.03 48.67 16 19 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 20 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 21 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 22 C -0.15 -3.62 9.94 30.62 0.30 -3.31 16 23 C -0.16 -4.44 9.94 30.62 0.30 -4.14 16 24 C -0.11 -1.78 2.85 -9.49 -0.03 -1.80 16 25 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 26 C -0.13 -1.58 6.17 31.59 0.19 -1.38 16 27 C 0.04 0.47 7.70 72.35 0.56 1.03 16 28 O -0.39 -6.78 11.52 -148.98 -1.72 -8.49 16 29 C 0.04 0.61 5.48 72.67 0.40 1.01 16 30 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 33 H 0.08 1.01 7.98 -2.39 -0.02 0.99 16 34 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.41 7.34 5.56 -92.70 -0.52 6.83 16 36 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 37 H 0.04 1.41 7.23 -2.39 -0.02 1.39 16 38 H 0.06 1.95 7.73 -2.39 -0.02 1.93 16 39 H 0.10 1.97 8.09 -2.38 -0.02 1.95 16 40 H 0.01 0.46 8.09 -2.38 -0.02 0.44 16 41 H 0.02 0.69 7.10 -2.39 -0.02 0.67 16 42 H 0.38 20.08 7.33 -92.71 -0.68 19.40 16 43 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 44 H 0.12 2.23 8.14 -2.39 -0.02 2.21 16 45 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 46 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 47 H 0.11 2.54 8.14 -2.39 -0.02 2.52 16 48 H 0.09 0.88 7.85 -2.39 -0.02 0.86 16 49 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 50 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 51 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 52 H 0.10 1.37 6.87 -2.39 -0.02 1.35 16 53 H 0.08 0.92 7.87 -2.39 -0.02 0.90 16 Total: -1.00 -75.13 424.53 1.11 -74.02 By element: Atomic # 1 Polarization: 37.21 SS G_CDS: -0.30 Total: 36.91 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: 6.00 Total: -3.45 kcal Atomic # 7 Polarization: -112.90 SS G_CDS: -3.99 Total: -116.89 kcal Atomic # 8 Polarization: -36.63 SS G_CDS: -2.63 Total: -39.25 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.67 kcal Total: -75.13 1.11 -74.02 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166408796.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.890 kcal (2) G-P(sol) polarization free energy of solvation -75.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds