Wall clock time and date at job start Sat Apr 11 2020 06:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42901 * 109.46931 * 2 1 4 4 C 1.42897 * 113.99731 * 185.72865 * 3 2 1 5 5 H 1.09004 * 109.47516 * 20.98210 * 4 3 2 6 6 C 1.50700 * 109.47022 * 140.97858 * 4 3 2 7 7 O 1.21276 * 120.00371 * 22.37198 * 6 4 3 8 8 N 1.34779 * 119.99807 * 202.37985 * 6 4 3 9 9 C 1.46508 * 119.99706 * 183.50996 * 8 6 4 10 10 C 1.53002 * 109.46869 * 175.07391 * 9 8 6 11 11 C 1.52995 * 109.46808 * 183.16484 * 10 9 8 12 12 C 1.52997 * 115.55068 * 64.44584 * 11 10 9 13 13 N 1.46497 * 109.47454 * 64.79835 * 12 11 10 14 14 C 1.36941 * 120.00561 * 185.16607 * 13 12 11 15 15 H 1.08004 * 119.99505 * 4.61154 * 14 13 12 16 16 C 1.38805 * 120.00506 * 184.61328 * 14 13 12 17 17 N 1.31622 * 120.00166 * 173.58662 * 16 14 13 18 18 Si 1.86800 * 119.99949 * 353.59161 * 16 14 13 19 19 H 1.48503 * 109.47129 * 93.35349 * 18 16 14 20 20 H 1.48493 * 109.47164 * 213.35530 * 18 16 14 21 21 H 1.48499 * 109.47081 * 333.35624 * 18 16 14 22 22 C 1.52998 * 117.50058 * 278.77220 * 11 10 9 23 23 C 1.53006 * 117.49778 * 210.10909 * 11 10 9 24 24 C 1.52994 * 109.47349 * 260.97707 * 4 3 2 25 25 H 1.09005 * 110.80409 * 295.61987 * 24 4 3 26 26 C 1.54804 * 110.91095 * 171.98688 * 24 4 3 27 27 C 1.54104 * 104.18818 * 220.92092 * 26 24 4 28 28 O 1.43742 * 107.29217 * 357.97046 * 27 26 24 29 29 C 1.44418 * 107.00289 * 26.48865 * 28 27 26 30 30 H 1.09001 * 109.47134 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46947 * 300.00273 * 1 2 3 32 32 H 1.08998 * 109.46874 * 60.00601 * 1 2 3 33 33 H 1.08996 * 109.47349 * 239.99729 * 2 1 3 34 34 H 1.08998 * 109.46874 * 119.99399 * 2 1 3 35 35 H 0.97002 * 120.00285 * 3.50145 * 8 6 4 36 36 H 1.09000 * 109.46771 * 295.07065 * 9 8 6 37 37 H 1.08999 * 109.47193 * 55.07395 * 9 8 6 38 38 H 1.09007 * 109.47200 * 303.16316 * 10 9 8 39 39 H 1.08994 * 109.47461 * 63.16408 * 10 9 8 40 40 H 1.09006 * 109.47672 * 184.79888 * 12 11 10 41 41 H 1.08996 * 109.47306 * 304.79483 * 12 11 10 42 42 H 0.96997 * 120.00118 * 5.16533 * 13 12 11 43 43 H 0.96998 * 119.99674 * 180.02562 * 17 16 14 44 44 H 1.09000 * 117.50034 * 0.02562 * 22 11 10 45 45 H 1.09001 * 117.50266 * 145.02379 * 22 11 10 46 46 H 1.08997 * 117.49880 * 214.97668 * 23 11 10 47 47 H 1.08993 * 117.49533 * 359.97438 * 23 11 10 48 48 H 1.09003 * 110.48961 * 339.59958 * 26 24 4 49 49 H 1.09005 * 110.49109 * 102.11589 * 26 24 4 50 50 H 1.09005 * 109.87846 * 117.39736 * 27 26 24 51 51 H 1.09006 * 109.87802 * 238.54278 * 27 26 24 52 52 H 1.08997 * 110.64996 * 201.48153 * 29 28 27 53 53 H 1.08998 * 110.60066 * 78.46926 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4247 1.4623 -0.1303 5 1 3.8247 0.5479 -0.5685 6 6 3.7541 2.6321 -1.0214 7 8 2.9490 3.5269 -1.1699 8 7 4.9433 2.6839 -1.6535 9 6 5.2947 3.8567 -2.4582 10 6 6.7330 3.7177 -2.9612 11 6 7.1265 4.9775 -3.7350 12 6 7.1750 6.2678 -2.9144 13 7 8.2344 6.1668 -1.9075 14 6 8.3974 7.1634 -0.9826 15 1 7.6998 7.9872 -0.9479 16 6 9.4592 7.1150 -0.0899 17 7 9.6903 8.1315 0.7136 18 14 10.5603 5.6072 -0.0290 19 1 11.7325 5.8140 -0.9169 20 1 11.0265 5.3907 1.3641 21 1 9.7970 4.4181 -0.4859 22 6 6.6703 5.0833 -5.1915 23 6 8.1434 4.8220 -4.8676 24 6 4.0476 1.6813 1.2498 25 1 3.7213 2.6302 1.6757 26 6 5.5923 1.6107 1.1764 27 6 5.9948 0.8229 2.4381 28 8 4.7885 0.5333 3.1640 29 6 3.7128 0.5040 2.2009 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5137 0.8900 35 1 5.5666 1.9447 -1.5757 36 1 4.6176 3.9295 -3.3092 37 1 5.2087 4.7554 -1.8474 38 1 7.4040 3.5884 -2.1119 39 1 6.8062 2.8505 -3.6174 40 1 7.3803 7.1107 -3.5743 41 1 6.2161 6.4195 -2.4189 42 1 8.8204 5.3939 -1.8959 43 1 10.4326 8.0977 1.3372 44 1 6.0893 4.2556 -5.5984 45 1 6.4050 6.0723 -5.5653 46 1 8.8466 5.6392 -5.0284 47 1 8.5323 3.8223 -5.0611 48 1 5.9077 1.0797 0.2782 49 1 6.0214 2.6125 1.1966 50 1 6.4882 -0.1064 2.1532 51 1 6.6625 1.4256 3.0541 52 1 2.7532 0.6677 2.6912 53 1 3.7108 -0.4404 1.6567 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166408798.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:15 Heat of formation + Delta-G solvation = -120.334803 kcal Electronic energy + Delta-G solvation = -31066.723096 eV Core-core repulsion = 26938.542729 eV Total energy + Delta-G solvation = -4128.180367 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.58816 -40.15726 -39.56000 -38.63411 -36.19256 -35.84855 -34.29286 -33.23267 -32.02569 -31.31363 -30.36732 -28.24380 -27.59079 -24.56407 -24.27145 -23.79222 -23.48650 -23.01421 -22.16227 -21.61004 -20.39834 -19.27697 -18.50801 -18.08860 -17.69479 -17.24623 -16.70045 -16.64653 -16.59580 -16.29598 -16.04033 -15.85212 -15.60550 -15.19919 -15.11692 -14.76363 -14.69371 -14.33685 -14.10312 -13.97445 -13.65690 -13.53913 -13.36487 -13.16346 -13.11639 -12.84817 -12.59896 -12.52876 -12.41601 -12.28509 -12.26514 -12.18176 -12.01647 -11.90819 -11.85135 -11.80790 -11.15207 -11.08234 -10.94227 -10.68887 -10.64050 -10.44067 -10.15933 -9.28883 -8.03764 -5.36816 1.35170 1.41332 1.44982 1.49229 1.78370 2.48447 2.68779 2.83912 2.93772 3.27077 3.39126 3.56817 3.65078 3.69113 3.77116 3.80354 3.91719 3.99784 4.03305 4.08463 4.12224 4.15035 4.21396 4.28496 4.38166 4.40915 4.42680 4.50317 4.62363 4.66578 4.72700 4.81349 4.84081 4.85611 4.91279 4.93064 4.95171 5.02614 5.06566 5.09697 5.13445 5.24976 5.27640 5.31065 5.35879 5.38599 5.74366 5.82228 6.04263 6.20140 6.49875 7.07782 7.16388 7.83103 8.06606 9.18249 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.009817 B = 0.003342 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2851.567835 B = 8375.649520 C =10259.402922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.039 3.961 3 O -0.384 6.384 4 C 0.098 3.902 5 H 0.128 0.872 6 C 0.505 3.495 7 O -0.573 6.573 8 N -0.709 5.709 9 C 0.129 3.871 10 C -0.076 4.076 11 C -0.147 4.147 12 C 0.190 3.810 13 N -0.746 5.746 14 C -0.237 4.237 15 H 0.045 0.955 16 C -0.066 4.066 17 N -0.986 5.986 18 Si 0.959 3.041 19 H -0.279 1.279 20 H -0.297 1.297 21 H -0.240 1.240 22 C -0.151 4.151 23 C -0.161 4.161 24 C -0.135 4.135 25 H 0.065 0.935 26 C -0.153 4.153 27 C 0.045 3.955 28 O -0.400 6.400 29 C 0.061 3.939 30 H 0.097 0.903 31 H 0.055 0.945 32 H 0.051 0.949 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.415 0.585 36 H 0.068 0.932 37 H 0.037 0.963 38 H 0.065 0.935 39 H 0.104 0.896 40 H 0.015 0.985 41 H 0.017 0.983 42 H 0.369 0.631 43 H 0.258 0.742 44 H 0.119 0.881 45 H 0.090 0.910 46 H 0.082 0.918 47 H 0.117 0.883 48 H 0.109 0.891 49 H 0.066 0.934 50 H 0.088 0.912 51 H 0.079 0.921 52 H 0.096 0.904 53 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.311 -27.379 -7.407 30.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.036 4.036 3 O -0.303 6.303 4 C 0.037 3.963 5 H 0.145 0.855 6 C 0.291 3.709 7 O -0.452 6.452 8 N -0.363 5.363 9 C 0.005 3.995 10 C -0.114 4.114 11 C -0.148 4.148 12 C 0.064 3.936 13 N -0.392 5.392 14 C -0.368 4.368 15 H 0.064 0.936 16 C -0.258 4.258 17 N -0.637 5.637 18 Si 0.785 3.215 19 H -0.205 1.205 20 H -0.223 1.223 21 H -0.164 1.164 22 C -0.189 4.189 23 C -0.198 4.198 24 C -0.155 4.155 25 H 0.084 0.916 26 C -0.190 4.190 27 C -0.031 4.031 28 O -0.320 6.320 29 C -0.015 4.015 30 H 0.116 0.884 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.253 0.747 36 H 0.087 0.913 37 H 0.055 0.945 38 H 0.084 0.916 39 H 0.123 0.877 40 H 0.033 0.967 41 H 0.035 0.965 42 H 0.202 0.798 43 H 0.066 0.934 44 H 0.137 0.863 45 H 0.109 0.891 46 H 0.100 0.900 47 H 0.135 0.865 48 H 0.127 0.873 49 H 0.085 0.915 50 H 0.106 0.894 51 H 0.097 0.903 52 H 0.114 0.886 53 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -12.091 -26.408 -7.183 29.920 hybrid contribution 1.102 0.236 0.511 1.237 sum -10.989 -26.172 -6.672 29.159 Atomic orbital electron populations 1.21786 0.93222 1.03563 1.02406 1.23053 0.96421 0.82104 1.02064 1.88080 1.19209 1.28968 1.94057 1.21856 0.83794 0.97308 0.93377 0.85484 1.21065 0.81682 0.88138 0.80055 1.90712 1.49558 1.40985 1.63898 1.45876 1.18107 1.22058 1.50246 1.21208 0.96602 0.87359 0.94313 1.21149 0.93733 0.96353 1.00129 1.21442 1.07413 0.95491 0.90441 1.20211 0.90123 0.94126 0.89174 1.42504 1.38527 1.23064 1.35078 1.18990 1.07905 1.00768 1.09149 0.93642 1.25593 1.00173 1.01152 0.98846 1.69931 1.33240 1.32803 1.27689 0.85329 0.78923 0.80465 0.76746 1.20481 1.22339 1.16436 1.23089 0.97281 1.03795 0.94718 1.23072 0.92493 1.03657 1.00581 1.23059 0.96124 1.01056 0.95228 0.91639 1.23065 0.93364 1.02149 1.00451 1.23283 0.87578 0.99855 0.92419 1.88883 1.17678 1.92463 1.32943 1.23705 0.91356 0.96734 0.89713 0.88394 0.92591 0.93028 0.91213 0.90947 0.74696 0.91332 0.94496 0.91585 0.87743 0.96720 0.96531 0.79768 0.93351 0.86261 0.89123 0.89974 0.86457 0.87314 0.91532 0.89409 0.90276 0.88604 0.89055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 10.28 71.98 0.74 -1.13 16 2 C 0.04 0.49 6.23 71.98 0.45 0.94 16 3 O -0.38 -8.42 9.44 -130.97 -1.24 -9.66 16 4 C 0.10 1.83 2.11 29.85 0.06 1.89 16 5 H 0.13 1.20 7.53 -2.39 -0.02 1.18 16 6 C 0.50 13.37 6.81 87.66 0.60 13.97 16 7 O -0.57 -21.89 16.65 14.99 0.25 -21.64 16 8 N -0.71 -14.77 5.16 -463.04 -2.39 -17.15 16 9 C 0.13 3.30 5.56 86.38 0.48 3.78 16 10 C -0.08 -1.67 5.13 30.59 0.16 -1.51 16 11 C -0.15 -3.91 1.54 -52.18 -0.08 -3.99 16 12 C 0.19 7.35 5.91 86.38 0.51 7.86 16 13 N -0.75 -34.65 5.26 -343.46 -1.81 -36.46 16 14 C -0.24 -13.86 10.46 84.03 0.88 -12.98 16 15 H 0.05 2.98 8.06 -2.91 -0.02 2.96 16 16 C -0.07 -3.96 5.50 84.86 0.47 -3.50 16 17 N -0.99 -64.46 13.97 21.65 0.30 -64.15 16 18 Si 0.96 44.61 27.73 68.60 1.90 46.51 16 19 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 20 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 21 H -0.24 -9.59 6.55 99.48 0.65 -8.94 16 22 C -0.15 -3.12 9.94 30.62 0.30 -2.82 16 23 C -0.16 -3.59 9.95 30.62 0.30 -3.28 16 24 C -0.13 -2.66 2.86 -9.50 -0.03 -2.69 16 25 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 26 C -0.15 -2.60 5.80 31.58 0.18 -2.42 16 27 C 0.05 0.77 7.70 72.36 0.56 1.33 16 28 O -0.40 -8.58 11.52 -148.98 -1.72 -10.30 16 29 C 0.06 0.99 5.64 72.67 0.41 1.40 16 30 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.07 0.61 7.98 -2.39 -0.02 0.59 16 34 H 0.07 0.63 5.88 -2.39 -0.01 0.61 16 35 H 0.42 5.27 7.23 -92.71 -0.67 4.60 16 36 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.04 1.28 6.83 -2.39 -0.02 1.27 16 38 H 0.07 1.64 7.73 -2.38 -0.02 1.62 16 39 H 0.10 1.49 8.10 -2.39 -0.02 1.47 16 40 H 0.01 0.60 8.10 -2.38 -0.02 0.58 16 41 H 0.02 0.70 6.89 -2.39 -0.02 0.69 16 42 H 0.37 15.84 5.22 -92.71 -0.48 15.36 16 43 H 0.26 15.96 8.31 -92.71 -0.77 15.19 16 44 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 45 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 46 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 47 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 48 H 0.11 1.07 6.65 -2.39 -0.02 1.06 16 49 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 50 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 51 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 52 H 0.10 1.58 8.12 -2.39 -0.02 1.56 16 53 H 0.09 0.91 7.03 -2.39 -0.02 0.89 16 Total: -1.00 -84.15 419.26 0.99 -83.16 By element: Atomic # 1 Polarization: 33.15 SS G_CDS: -0.31 Total: 32.85 kcal Atomic # 6 Polarization: -9.14 SS G_CDS: 5.99 Total: -3.15 kcal Atomic # 7 Polarization: -113.87 SS G_CDS: -3.89 Total: -117.77 kcal Atomic # 8 Polarization: -38.90 SS G_CDS: -2.70 Total: -41.60 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 1.90 Total: 46.51 kcal Total: -84.15 0.99 -83.16 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166408798.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.177 kcal (2) G-P(sol) polarization free energy of solvation -84.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds