Wall clock time and date at job start Sat Apr 11 2020 06:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42898 * 113.99952 * 2 1 4 4 C 1.53006 * 109.47414 * 180.02562 * 3 2 1 5 5 C 1.50690 * 109.47411 * 180.02562 * 4 3 2 6 6 O 1.21286 * 119.99911 * 0.02562 * 5 4 3 7 7 N 1.34783 * 120.00261 * 179.97438 * 5 4 3 8 8 C 1.46923 * 120.62923 * 179.97438 * 7 5 4 9 9 C 1.53196 * 108.77351 * 233.63020 * 8 7 5 10 10 C 1.53038 * 109.31174 * 305.36629 * 9 8 7 11 11 C 1.53001 * 109.45995 * 181.38407 * 10 9 8 12 12 H 1.09002 * 109.48301 * 300.00196 * 11 10 9 13 13 C 1.53093 * 109.48321 * 179.97438 * 11 10 9 14 14 C 1.53178 * 109.16373 * 182.40028 * 13 11 10 15 15 H 1.08997 * 109.54056 * 297.02111 * 14 13 11 16 16 N 1.46498 * 109.54151 * 176.84819 * 14 13 11 17 17 C 1.36943 * 119.99727 * 155.17693 * 16 14 13 18 18 H 1.07998 * 120.00392 * 359.97438 * 17 16 14 19 19 C 1.38811 * 119.99586 * 179.97438 * 17 16 14 20 20 N 1.31618 * 120.00460 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99694 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47297 * 179.97438 * 21 19 17 23 23 H 1.48503 * 109.47261 * 60.00129 * 21 19 17 24 24 H 1.48500 * 109.47454 * 300.00122 * 21 19 17 25 25 C 1.53178 * 109.11069 * 56.93509 * 14 13 11 26 26 C 1.53099 * 109.15641 * 303.15102 * 25 14 13 27 27 O 1.42902 * 109.48802 * 60.02490 * 11 10 9 28 28 C 1.53045 * 109.52498 * 61.37705 * 10 9 8 29 29 C 1.46920 * 120.62544 * 0.02562 * 7 5 4 30 30 H 1.09000 * 109.47115 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47113 * 299.99310 * 1 2 3 32 32 H 1.09002 * 109.47411 * 59.99720 * 1 2 3 33 33 H 1.08999 * 109.47440 * 60.00377 * 3 2 1 34 34 H 1.08998 * 109.47446 * 300.00242 * 3 2 1 35 35 H 1.08999 * 109.46745 * 59.99663 * 4 3 2 36 36 H 1.08998 * 109.46776 * 300.00364 * 4 3 2 37 37 H 1.09005 * 109.58272 * 113.84747 * 8 7 5 38 38 H 1.08993 * 109.70997 * 353.49240 * 8 7 5 39 39 H 1.09002 * 109.49774 * 185.41761 * 9 8 7 40 40 H 1.08999 * 109.49646 * 65.32085 * 9 8 7 41 41 H 1.09001 * 109.46412 * 301.35833 * 10 9 8 42 42 H 1.08996 * 109.52059 * 62.49057 * 13 11 10 43 43 H 1.09002 * 109.57345 * 302.33753 * 13 11 10 44 44 H 0.96998 * 120.00095 * 335.17152 * 16 14 13 45 45 H 0.97001 * 119.99952 * 359.97438 * 20 19 17 46 46 H 1.08998 * 109.52100 * 62.96721 * 25 14 13 47 47 H 1.09000 * 109.52137 * 183.16122 * 25 14 13 48 48 H 1.08999 * 109.40898 * 297.49349 * 26 25 14 49 49 H 1.09004 * 109.49285 * 177.50477 * 26 25 14 50 50 H 1.08994 * 109.50141 * 58.57699 * 28 10 9 51 51 H 1.09003 * 109.49385 * 178.67610 * 28 10 9 52 52 H 1.08998 * 109.58717 * 246.15327 * 29 7 5 53 53 H 1.09001 * 109.59136 * 6.43759 * 29 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1483 2.5613 0.0000 6 8 3.4354 3.5425 0.0013 7 7 5.4888 2.7023 0.0001 8 6 6.1010 4.0379 0.0002 9 6 7.0884 4.1277 -1.1677 10 6 8.0919 2.9762 -1.0717 11 6 9.1008 3.0825 -2.2170 12 1 8.5754 3.0280 -3.1705 13 6 10.1053 1.9312 -2.1211 14 6 11.1466 2.0783 -3.2347 15 1 10.6568 1.9971 -4.2050 16 7 12.1551 1.0236 -3.1051 17 6 12.8679 0.6193 -4.2023 18 1 12.6863 1.0777 -5.1632 19 6 13.8238 -0.3796 -4.0793 20 7 14.0448 -0.9386 -2.9084 21 14 14.7956 -0.9316 -5.5761 22 1 15.7464 -2.0021 -5.1818 23 1 15.5507 0.2214 -6.1289 24 1 13.8628 -1.4527 -6.6074 25 6 11.8200 3.4489 -3.1138 26 6 10.7490 4.5415 -3.1693 27 8 9.7956 4.3279 -2.1263 28 6 7.3495 1.6414 -1.1684 29 6 6.3653 1.5232 -0.0010 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.6886 1.8464 0.8900 34 1 1.6885 1.8464 -0.8899 35 1 3.8567 0.6439 -0.8908 36 1 3.8574 0.6436 0.8891 37 1 6.6306 4.1970 0.9395 38 1 5.3274 4.7969 -0.1162 39 1 7.6200 5.0782 -1.1224 40 1 6.5447 4.0589 -2.1099 41 1 8.6176 3.0311 -0.1184 42 1 9.5826 0.9814 -2.2343 43 1 10.6023 1.9600 -1.1514 44 1 12.3180 0.6118 -2.2422 45 1 13.5399 -0.6522 -2.1313 46 1 12.3526 3.5105 -2.1648 47 1 12.5225 3.5834 -3.9363 48 1 10.2451 4.5061 -4.1352 49 1 11.2175 5.5170 -3.0392 50 1 6.8034 1.5962 -2.1106 51 1 8.0670 0.8220 -1.1236 52 1 6.9165 1.4769 0.9382 53 1 5.7645 0.6212 -0.1169 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186041285.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:23 Heat of formation + Delta-G solvation = -152.599550 kcal Electronic energy + Delta-G solvation = -30483.992364 eV Core-core repulsion = 26354.412892 eV Total energy + Delta-G solvation = -4129.579472 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.49920 -40.59361 -38.92366 -38.29557 -37.00559 -34.89015 -34.26550 -33.25821 -31.79154 -31.18629 -30.72986 -27.75638 -26.93969 -25.80030 -24.85243 -24.58853 -23.78895 -22.99737 -21.42849 -21.24365 -19.91421 -19.40444 -18.54522 -17.49307 -17.37013 -17.11875 -17.11172 -16.55887 -16.46196 -16.17944 -15.86872 -15.76556 -15.53439 -15.45626 -15.04594 -14.90085 -14.76804 -14.47473 -14.24710 -14.08491 -13.80430 -13.58020 -13.27541 -12.94952 -12.78271 -12.72072 -12.63581 -12.44051 -12.30776 -12.21755 -12.15144 -12.00633 -11.94847 -11.88906 -11.58230 -11.56169 -11.37720 -11.05532 -10.89982 -10.89453 -10.69667 -10.45787 -9.71067 -9.13836 -8.39881 -5.34011 1.51971 1.57219 1.66687 1.83119 1.84263 2.69101 2.73715 2.82380 3.37989 3.46486 3.57326 3.73134 3.78882 3.93096 3.94340 3.99286 4.00034 4.11074 4.13539 4.19694 4.22867 4.34104 4.36471 4.39713 4.48625 4.50255 4.50477 4.54129 4.60700 4.69331 4.73544 4.77187 4.77975 4.82653 4.83503 4.84669 4.86403 4.94829 4.95977 5.06713 5.10846 5.19261 5.26624 5.39167 5.44224 5.54246 5.58136 6.12175 6.28028 6.33023 6.48857 7.06016 7.08211 7.98423 8.10190 9.11891 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014386 B = 0.002137 C = 0.001924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.929556 B =13098.296381 C =14553.187290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.410 6.410 3 C 0.078 3.922 4 C -0.135 4.135 5 C 0.518 3.482 6 O -0.587 6.587 7 N -0.607 5.607 8 C 0.113 3.887 9 C -0.115 4.115 10 C -0.070 4.070 11 C 0.107 3.893 12 H 0.057 0.943 13 C -0.141 4.141 14 C 0.173 3.827 15 H 0.038 0.962 16 N -0.747 5.747 17 C -0.329 4.329 18 H 0.064 0.936 19 C -0.105 4.105 20 N -0.975 5.975 21 Si 1.126 2.874 22 H -0.293 1.293 23 H -0.280 1.280 24 H -0.277 1.277 25 C -0.163 4.163 26 C 0.073 3.927 27 O -0.385 6.385 28 C -0.130 4.130 29 C 0.107 3.893 30 H 0.102 0.898 31 H 0.049 0.951 32 H 0.047 0.953 33 H 0.051 0.949 34 H 0.048 0.952 35 H 0.118 0.882 36 H 0.122 0.878 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.058 0.942 41 H 0.081 0.919 42 H 0.077 0.923 43 H 0.060 0.940 44 H 0.359 0.641 45 H 0.244 0.756 46 H 0.047 0.953 47 H 0.052 0.948 48 H 0.055 0.945 49 H 0.108 0.892 50 H 0.069 0.931 51 H 0.087 0.913 52 H 0.087 0.913 53 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.659 7.098 6.784 25.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.330 6.330 3 C 0.001 3.999 4 C -0.174 4.174 5 C 0.308 3.692 6 O -0.468 6.468 7 N -0.340 5.340 8 C -0.009 4.009 9 C -0.153 4.153 10 C -0.089 4.089 11 C 0.048 3.952 12 H 0.075 0.925 13 C -0.180 4.180 14 C 0.065 3.935 15 H 0.056 0.944 16 N -0.388 5.388 17 C -0.461 4.461 18 H 0.082 0.918 19 C -0.296 4.296 20 N -0.623 5.623 21 Si 0.951 3.049 22 H -0.219 1.219 23 H -0.206 1.206 24 H -0.203 1.203 25 C -0.204 4.204 26 C -0.005 4.005 27 O -0.304 6.304 28 C -0.169 4.169 29 C -0.015 4.015 30 H 0.120 0.880 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.136 0.864 36 H 0.140 0.860 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.101 0.899 40 H 0.077 0.923 41 H 0.099 0.901 42 H 0.095 0.905 43 H 0.079 0.921 44 H 0.191 0.809 45 H 0.054 0.946 46 H 0.066 0.934 47 H 0.071 0.929 48 H 0.073 0.927 49 H 0.126 0.874 50 H 0.088 0.912 51 H 0.105 0.895 52 H 0.105 0.895 53 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -22.816 6.633 6.164 24.547 hybrid contribution -0.711 1.007 0.522 1.339 sum -23.527 7.639 6.686 25.624 Atomic orbital electron populations 1.22937 0.79263 1.04038 1.00789 1.87775 1.21624 1.27956 1.95629 1.22105 0.92603 0.84161 1.01025 1.21505 0.94662 0.93986 1.07248 1.20799 0.82012 0.91515 0.74912 1.90683 1.61414 1.42316 1.52340 1.48227 1.05259 1.08323 1.72157 1.21605 0.96138 0.84135 0.99068 1.21788 0.96043 0.99332 0.98114 1.21069 0.94229 0.95691 0.97921 1.22068 0.91354 0.82797 0.98949 0.92480 1.22422 0.97081 0.99801 0.98665 1.20415 0.88934 0.87359 0.96788 0.94441 1.42623 1.44612 1.43597 1.08011 1.20342 1.17160 1.18451 0.90114 0.91804 1.27157 1.00362 0.96954 1.05150 1.70993 1.45123 1.46130 1.00012 0.82650 0.75065 0.75946 0.71279 1.21926 1.20577 1.20306 1.22749 0.99187 0.97301 1.01120 1.22556 0.88883 0.98411 0.90602 1.87833 1.54494 1.37380 1.50742 1.21996 0.98464 0.96978 0.99421 1.21977 0.92522 0.87736 0.99275 0.87980 0.93283 0.93468 0.93032 0.93334 0.86421 0.86033 0.90257 0.90275 0.89909 0.92327 0.90110 0.90464 0.92134 0.80884 0.94551 0.93365 0.92903 0.92661 0.87440 0.91195 0.89490 0.89491 0.87068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 113.37 1.25 1.54 16 2 O -0.41 -7.00 10.70 -148.98 -1.59 -8.60 16 3 C 0.08 1.31 5.23 71.98 0.38 1.68 16 4 C -0.13 -1.87 4.42 29.85 0.13 -1.74 16 5 C 0.52 10.08 7.70 87.65 0.67 10.76 16 6 O -0.59 -15.94 15.40 -3.05 -0.05 -15.98 16 7 N -0.61 -10.12 2.97 -819.00 -2.43 -12.55 16 8 C 0.11 1.99 6.43 86.36 0.56 2.55 16 9 C -0.11 -2.09 5.23 30.67 0.16 -1.93 16 10 C -0.07 -1.34 1.95 -10.77 -0.02 -1.36 16 11 C 0.11 2.63 2.22 30.63 0.07 2.69 16 12 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 13 C -0.14 -4.30 4.47 30.68 0.14 -4.17 16 14 C 0.17 6.73 2.86 45.11 0.13 6.86 16 15 H 0.04 1.51 8.08 -2.39 -0.02 1.50 16 16 N -0.75 -37.14 5.13 -322.38 -1.65 -38.80 16 17 C -0.33 -18.33 9.93 84.03 0.83 -17.50 16 18 H 0.06 3.48 7.83 -2.91 -0.02 3.46 16 19 C -0.11 -6.06 5.50 84.86 0.47 -5.59 16 20 N -0.97 -60.59 13.70 21.65 0.30 -60.29 16 21 Si 1.13 51.59 29.92 68.60 2.05 53.64 16 22 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 23 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 24 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 25 C -0.16 -5.76 5.73 30.69 0.18 -5.58 16 26 C 0.07 1.96 6.84 72.02 0.49 2.45 16 27 O -0.39 -10.41 9.71 -148.98 -1.45 -11.85 16 28 C -0.13 -2.04 5.04 30.66 0.15 -1.89 16 29 C 0.11 1.30 6.34 86.35 0.55 1.85 16 30 H 0.10 0.83 8.14 -2.39 -0.02 0.82 16 31 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.05 0.90 8.10 -2.39 -0.02 0.89 16 34 H 0.05 0.88 8.10 -2.39 -0.02 0.86 16 35 H 0.12 1.33 7.69 -2.39 -0.02 1.31 16 36 H 0.12 1.25 7.94 -2.39 -0.02 1.23 16 37 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 38 H 0.08 1.64 7.01 -2.39 -0.02 1.62 16 39 H 0.08 1.58 7.64 -2.39 -0.02 1.56 16 40 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.08 2.28 6.54 -2.39 -0.02 2.26 16 43 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 44 H 0.36 18.68 6.63 -92.71 -0.61 18.07 16 45 H 0.24 15.09 6.77 -92.71 -0.63 14.46 16 46 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 47 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 48 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 49 H 0.11 2.46 8.14 -2.39 -0.02 2.45 16 50 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 51 H 0.09 1.42 6.42 -2.39 -0.02 1.40 16 52 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 53 H 0.11 0.91 5.93 -2.39 -0.01 0.90 16 Total: -1.00 -72.78 408.43 1.71 -71.07 By element: Atomic # 1 Polarization: 32.33 SS G_CDS: 0.41 Total: 32.74 kcal Atomic # 6 Polarization: -15.50 SS G_CDS: 6.13 Total: -9.37 kcal Atomic # 7 Polarization: -107.85 SS G_CDS: -3.79 Total: -111.64 kcal Atomic # 8 Polarization: -33.34 SS G_CDS: -3.09 Total: -36.43 kcal Atomic # 14 Polarization: 51.59 SS G_CDS: 2.05 Total: 53.64 kcal Total: -72.78 1.71 -71.07 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186041285.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.534 kcal (2) G-P(sol) polarization free energy of solvation -72.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds