Wall clock time and date at job start Sat Apr 11 2020 06:13:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 114.00184 * 2 1 4 4 C 1.52992 * 109.47288 * 180.02562 * 3 2 1 5 5 C 1.50700 * 109.47257 * 179.97438 * 4 3 2 6 6 O 1.21279 * 120.00113 * 0.02562 * 5 4 3 7 7 N 1.34784 * 119.99961 * 180.02562 * 5 4 3 8 8 C 1.46927 * 120.62995 * 359.72079 * 7 5 4 9 9 C 1.52758 * 109.00682 * 233.58186 * 8 7 5 10 10 C 1.53039 * 109.38439 * 305.58958 * 9 8 7 11 11 C 1.53002 * 109.45762 * 181.26070 * 10 9 8 12 12 H 1.08993 * 109.48103 * 299.95242 * 11 10 9 13 13 C 1.53087 * 109.48170 * 59.99292 * 11 10 9 14 14 C 1.53178 * 109.16472 * 177.59053 * 13 11 10 15 15 H 1.09001 * 109.54083 * 183.14738 * 14 13 11 16 16 N 1.46507 * 109.61470 * 62.92914 * 14 13 11 17 17 C 1.36937 * 119.99943 * 155.40621 * 16 14 13 18 18 H 1.08007 * 119.99735 * 359.97438 * 17 16 14 19 19 C 1.38812 * 120.00167 * 180.02562 * 17 16 14 20 20 N 1.31617 * 119.99645 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 119.99897 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47273 * 59.99803 * 21 19 17 23 23 H 1.48505 * 109.46721 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47334 * 299.99375 * 21 19 17 25 25 C 1.53172 * 109.03440 * 303.01753 * 14 13 11 26 26 C 1.53095 * 109.16709 * 56.97915 * 25 14 13 27 27 O 1.42900 * 109.41182 * 302.39368 * 26 25 14 28 28 C 1.53041 * 109.53647 * 61.24252 * 10 9 8 29 29 C 1.46923 * 120.62964 * 179.97438 * 7 5 4 30 30 H 1.08994 * 109.47327 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46757 * 300.00089 * 1 2 3 32 32 H 1.08998 * 109.47198 * 59.99757 * 1 2 3 33 33 H 1.09004 * 109.47001 * 59.99769 * 3 2 1 34 34 H 1.09005 * 109.47138 * 300.00166 * 3 2 1 35 35 H 1.09004 * 109.47330 * 59.99919 * 4 3 2 36 36 H 1.08997 * 109.47279 * 300.00405 * 4 3 2 37 37 H 1.09003 * 109.58790 * 353.42296 * 8 7 5 38 38 H 1.09007 * 109.58432 * 113.84106 * 8 7 5 39 39 H 1.08998 * 109.56153 * 185.55612 * 9 8 7 40 40 H 1.08997 * 109.35812 * 65.50160 * 9 8 7 41 41 H 1.09000 * 109.45771 * 301.22193 * 10 9 8 42 42 H 1.09002 * 109.51974 * 297.49585 * 13 11 10 43 43 H 1.09000 * 109.52550 * 57.67946 * 13 11 10 44 44 H 0.97000 * 120.00108 * 335.39540 * 16 14 13 45 45 H 0.97002 * 120.00128 * 179.97438 * 20 19 17 46 46 H 1.09000 * 109.52278 * 297.07000 * 25 14 13 47 47 H 1.09004 * 109.52616 * 176.88608 * 25 14 13 48 48 H 1.08993 * 109.48351 * 182.40607 * 26 25 14 49 49 H 1.09008 * 109.47718 * 62.37070 * 26 25 14 50 50 H 1.08996 * 109.49638 * 178.68503 * 28 10 9 51 51 H 1.08997 * 109.50160 * 58.58619 * 28 10 9 52 52 H 1.08998 * 109.59009 * 246.15627 * 29 7 5 53 53 H 1.09003 * 109.58381 * 6.44334 * 29 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1484 2.5614 -0.0013 6 8 3.4356 3.5426 -0.0008 7 7 5.4889 2.7022 -0.0024 8 6 6.3655 1.5231 0.0031 9 6 7.3508 1.6411 1.1644 10 6 8.0929 2.9760 1.0673 11 6 9.1026 3.0823 2.2118 12 1 8.5780 3.0276 3.1656 13 6 10.1075 1.9315 2.1147 14 6 11.1499 2.0788 3.2274 15 1 11.9004 1.2943 3.1301 16 7 10.4942 1.9705 4.5330 17 6 11.2118 1.5702 5.6285 18 1 12.2611 1.3340 5.5298 19 6 10.5905 1.4671 6.8655 20 7 9.3117 1.7545 6.9855 21 14 11.5693 0.9204 8.3596 22 1 12.6842 1.8723 8.5964 23 1 10.6815 0.8926 9.5498 24 1 12.1203 -0.4377 8.1207 25 6 11.8222 3.4495 3.1037 26 6 10.7512 4.5418 3.1626 27 8 9.7970 4.3280 2.1206 28 6 7.0895 4.1276 1.1640 29 6 6.1012 4.0377 -0.0036 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.6886 1.8464 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 3.8567 0.6439 -0.8909 36 1 3.8574 0.6435 0.8890 37 1 5.7648 0.6217 0.1254 38 1 6.9163 1.4729 -0.9362 39 1 8.0683 0.8219 1.1189 40 1 6.8054 1.5958 2.1070 41 1 8.6180 3.0310 0.1137 42 1 9.5852 0.9814 2.2282 43 1 10.6034 1.9618 1.1445 44 1 9.5518 2.1824 4.6216 45 1 8.8773 1.6820 7.8499 46 1 12.3529 3.5105 2.1536 47 1 12.5264 3.5852 3.9246 48 1 11.2194 5.5174 3.0322 49 1 10.2483 4.5060 4.1291 50 1 7.6210 5.0780 1.1182 51 1 6.5466 4.0589 2.1066 52 1 6.6301 4.1964 -0.9434 53 1 5.3260 4.7952 0.1118 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001186041287.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:31 Heat of formation + Delta-G solvation = -128.918292 kcal Electronic energy + Delta-G solvation = -31006.265560 eV Core-core repulsion = 26877.712985 eV Total energy + Delta-G solvation = -4128.552575 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.52814 -39.33306 -38.11663 -37.27672 -34.84944 -33.77996 -32.48112 -32.12168 -30.91663 -29.82730 -29.05455 -27.03626 -25.88602 -24.36466 -23.55186 -23.46497 -22.90202 -21.97702 -20.44151 -19.15040 -18.70273 -17.71375 -17.21849 -16.60998 -16.38352 -15.83233 -15.80961 -15.50732 -15.32301 -15.05994 -14.86941 -14.32113 -14.15856 -13.92638 -13.70436 -13.57593 -13.47941 -13.29103 -13.13676 -12.81112 -12.54002 -12.42810 -12.07007 -11.94780 -11.73615 -11.47886 -11.45540 -11.35368 -11.24488 -10.90394 -10.83861 -10.73582 -10.65053 -10.46432 -10.24932 -10.05625 -9.97021 -9.94118 -9.91988 -9.51938 -9.04208 -8.81050 -8.70408 -7.01004 -5.81242 -3.10167 2.43145 2.68373 3.40444 3.45445 3.46179 3.52986 4.07697 4.38863 4.55459 4.60344 4.70251 4.73767 4.80707 4.97735 4.99647 5.05268 5.07628 5.15113 5.22273 5.31843 5.35322 5.37554 5.43830 5.49113 5.49769 5.50873 5.54961 5.63247 5.63898 5.70411 5.72778 5.82592 5.88815 5.91152 5.95011 6.04259 6.15429 6.21749 6.28931 6.36010 6.44538 6.47019 6.64475 6.72636 6.81768 6.83629 6.85367 7.20363 7.65678 7.74395 7.96704 8.37338 9.48434 10.05001 10.39867 11.41226 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.011854 B = 0.002565 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2361.540487 B =10912.094171 C =12513.371204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.395 6.395 3 C 0.076 3.924 4 C -0.141 4.141 5 C 0.521 3.479 6 O -0.547 6.547 7 N -0.608 5.608 8 C 0.107 3.893 9 C -0.134 4.134 10 C -0.075 4.075 11 C 0.100 3.900 12 H 0.064 0.936 13 C -0.152 4.152 14 C 0.172 3.828 15 H 0.049 0.951 16 N -0.722 5.722 17 C -0.240 4.240 18 H 0.069 0.931 19 C -0.012 4.012 20 N -0.933 5.933 21 Si 0.906 3.094 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 C -0.170 4.170 26 C 0.070 3.930 27 O -0.387 6.387 28 C -0.126 4.126 29 C 0.112 3.888 30 H 0.086 0.914 31 H 0.042 0.958 32 H 0.041 0.959 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.101 0.899 36 H 0.105 0.895 37 H 0.088 0.912 38 H 0.072 0.928 39 H 0.085 0.915 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.063 0.937 44 H 0.382 0.618 45 H 0.256 0.744 46 H 0.051 0.949 47 H 0.069 0.931 48 H 0.077 0.923 49 H 0.060 0.940 50 H 0.085 0.915 51 H 0.067 0.933 52 H 0.067 0.933 53 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.909 -0.392 -17.985 20.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.315 6.315 3 C -0.001 4.001 4 C -0.180 4.180 5 C 0.309 3.691 6 O -0.425 6.425 7 N -0.342 5.342 8 C -0.016 4.016 9 C -0.172 4.172 10 C -0.093 4.093 11 C 0.043 3.957 12 H 0.081 0.919 13 C -0.190 4.190 14 C 0.062 3.938 15 H 0.067 0.933 16 N -0.364 5.364 17 C -0.371 4.371 18 H 0.087 0.913 19 C -0.208 4.208 20 N -0.581 5.581 21 Si 0.737 3.263 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.213 1.213 25 C -0.210 4.210 26 C -0.006 4.006 27 O -0.307 6.307 28 C -0.164 4.164 29 C -0.010 4.010 30 H 0.105 0.895 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.120 0.880 36 H 0.123 0.877 37 H 0.106 0.894 38 H 0.090 0.910 39 H 0.104 0.896 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.092 0.908 43 H 0.082 0.918 44 H 0.217 0.783 45 H 0.066 0.934 46 H 0.069 0.931 47 H 0.088 0.912 48 H 0.095 0.905 49 H 0.079 0.921 50 H 0.103 0.897 51 H 0.085 0.915 52 H 0.085 0.915 53 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -10.098 0.027 -17.996 20.636 hybrid contribution 0.353 -0.238 1.292 1.360 sum -9.745 -0.211 -16.704 19.340 Atomic orbital electron populations 1.22731 0.80594 1.02755 1.00199 1.87804 1.20071 1.28007 1.95568 1.22166 0.91936 0.84209 1.01747 1.21513 0.95403 0.95425 1.05707 1.20367 0.81957 0.91025 0.75740 1.90695 1.60516 1.40888 1.50443 1.48137 1.05248 1.07922 1.72887 1.21747 0.92780 0.87708 0.99317 1.21952 0.98304 0.98008 0.98942 1.21085 0.94872 0.94426 0.98964 1.21961 0.91756 0.84192 0.97831 0.91854 1.22473 0.98374 0.98915 0.99265 1.20253 0.93397 0.94068 0.86118 0.93258 1.42476 1.10281 1.80873 1.02796 1.19187 0.93455 1.37350 0.87117 0.91283 1.24724 0.95963 1.02447 0.97688 1.69638 1.09299 1.55123 1.24061 0.86289 0.78839 0.78476 0.82695 1.21325 1.21718 1.21301 1.22758 0.98809 0.98849 1.00630 1.22425 0.89751 0.97485 0.90987 1.87748 1.54912 1.37169 1.50870 1.21912 0.96379 0.99779 0.98316 1.21675 0.96648 0.83982 0.98711 0.89519 0.93887 0.94016 0.92305 0.92487 0.88033 0.87710 0.89406 0.91012 0.89639 0.90747 0.90605 0.90846 0.91791 0.78294 0.93437 0.93062 0.91202 0.90473 0.92128 0.89674 0.91452 0.91517 0.89080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.36 16 2 O -0.40 -4.04 10.70 -35.23 -0.38 -4.42 16 3 C 0.08 0.76 5.23 37.15 0.19 0.96 16 4 C -0.14 -1.29 4.42 -27.89 -0.12 -1.41 16 5 C 0.52 6.15 7.70 -10.98 -0.08 6.06 16 6 O -0.55 -8.29 15.39 5.56 0.09 -8.21 16 7 N -0.61 -6.48 2.98 -173.00 -0.52 -7.00 16 8 C 0.11 0.91 6.31 -3.93 -0.02 0.89 16 9 C -0.13 -1.41 5.03 -26.84 -0.13 -1.55 16 10 C -0.07 -0.90 1.95 -90.58 -0.18 -1.08 16 11 C 0.10 1.55 2.05 -26.69 -0.05 1.49 16 12 H 0.06 1.16 6.72 -51.93 -0.35 0.82 16 13 C -0.15 -2.37 4.65 -26.59 -0.12 -2.49 16 14 C 0.17 3.28 3.13 -67.75 -0.21 3.07 16 15 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 16 N -0.72 -17.15 4.45 -53.24 -0.24 -17.39 16 17 C -0.24 -6.42 9.93 -15.06 -0.15 -6.57 16 18 H 0.07 1.80 7.83 -52.48 -0.41 1.39 16 19 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 20 N -0.93 -27.45 13.06 55.49 0.72 -26.73 16 21 Si 0.91 22.01 29.55 -169.99 -5.02 16.98 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 25 C -0.17 -2.99 5.81 -26.59 -0.15 -3.14 16 26 C 0.07 1.21 6.68 37.21 0.25 1.46 16 27 O -0.39 -6.41 9.71 -35.23 -0.34 -6.75 16 28 C -0.13 -1.52 5.23 -26.59 -0.14 -1.66 16 29 C 0.11 1.23 6.44 -3.69 -0.02 1.21 16 30 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16 34 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 35 H 0.10 0.75 7.95 -51.93 -0.41 0.34 16 36 H 0.10 0.89 7.68 -51.93 -0.40 0.49 16 37 H 0.09 0.60 5.94 -51.93 -0.31 0.29 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.09 0.85 6.42 -51.93 -0.33 0.52 16 40 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.07 1.13 6.54 -51.93 -0.34 0.79 16 43 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.38 9.67 6.28 -40.82 -0.26 9.42 16 45 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 46 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 48 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 49 H 0.06 1.22 7.75 -51.92 -0.40 0.82 16 50 H 0.08 1.06 7.64 -51.93 -0.40 0.67 16 51 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 52 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 53 H 0.09 1.11 7.00 -51.93 -0.36 0.75 16 LS Contribution 406.28 15.07 6.12 6.12 Total: -1.00 -31.73 406.28 -8.95 -40.68 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: -9.44 Total: 8.55 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: 0.06 Total: -1.84 kcal Atomic # 7 Polarization: -51.09 SS G_CDS: -0.03 Total: -51.11 kcal Atomic # 8 Polarization: -18.74 SS G_CDS: -0.63 Total: -19.38 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -31.73 -8.95 -40.68 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186041287.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.243 kcal (2) G-P(sol) polarization free energy of solvation -31.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds