Wall clock time and date at job start Sat Apr 11 2020 06:13:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 114.00184 * 2 1 4 4 C 1.52992 * 109.47288 * 180.02562 * 3 2 1 5 5 C 1.50700 * 109.47257 * 179.97438 * 4 3 2 6 6 O 1.21279 * 120.00113 * 0.02562 * 5 4 3 7 7 N 1.34784 * 119.99961 * 180.02562 * 5 4 3 8 8 C 1.46927 * 120.62995 * 359.72079 * 7 5 4 9 9 C 1.52758 * 109.00682 * 233.58186 * 8 7 5 10 10 C 1.53039 * 109.38439 * 305.58958 * 9 8 7 11 11 C 1.53002 * 109.45762 * 181.26070 * 10 9 8 12 12 H 1.08993 * 109.48103 * 299.95242 * 11 10 9 13 13 C 1.53087 * 109.48170 * 59.99292 * 11 10 9 14 14 C 1.53178 * 109.16472 * 177.59053 * 13 11 10 15 15 H 1.09001 * 109.54083 * 183.14738 * 14 13 11 16 16 N 1.46507 * 109.61470 * 62.92914 * 14 13 11 17 17 C 1.36937 * 119.99943 * 155.40621 * 16 14 13 18 18 H 1.08007 * 119.99735 * 359.97438 * 17 16 14 19 19 C 1.38812 * 120.00167 * 180.02562 * 17 16 14 20 20 N 1.31617 * 119.99645 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 119.99897 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47273 * 59.99803 * 21 19 17 23 23 H 1.48505 * 109.46721 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47334 * 299.99375 * 21 19 17 25 25 C 1.53172 * 109.03440 * 303.01753 * 14 13 11 26 26 C 1.53095 * 109.16709 * 56.97915 * 25 14 13 27 27 O 1.42900 * 109.41182 * 302.39368 * 26 25 14 28 28 C 1.53041 * 109.53647 * 61.24252 * 10 9 8 29 29 C 1.46923 * 120.62964 * 179.97438 * 7 5 4 30 30 H 1.08994 * 109.47327 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46757 * 300.00089 * 1 2 3 32 32 H 1.08998 * 109.47198 * 59.99757 * 1 2 3 33 33 H 1.09004 * 109.47001 * 59.99769 * 3 2 1 34 34 H 1.09005 * 109.47138 * 300.00166 * 3 2 1 35 35 H 1.09004 * 109.47330 * 59.99919 * 4 3 2 36 36 H 1.08997 * 109.47279 * 300.00405 * 4 3 2 37 37 H 1.09003 * 109.58790 * 353.42296 * 8 7 5 38 38 H 1.09007 * 109.58432 * 113.84106 * 8 7 5 39 39 H 1.08998 * 109.56153 * 185.55612 * 9 8 7 40 40 H 1.08997 * 109.35812 * 65.50160 * 9 8 7 41 41 H 1.09000 * 109.45771 * 301.22193 * 10 9 8 42 42 H 1.09002 * 109.51974 * 297.49585 * 13 11 10 43 43 H 1.09000 * 109.52550 * 57.67946 * 13 11 10 44 44 H 0.97000 * 120.00108 * 335.39540 * 16 14 13 45 45 H 0.97002 * 120.00128 * 179.97438 * 20 19 17 46 46 H 1.09000 * 109.52278 * 297.07000 * 25 14 13 47 47 H 1.09004 * 109.52616 * 176.88608 * 25 14 13 48 48 H 1.08993 * 109.48351 * 182.40607 * 26 25 14 49 49 H 1.09008 * 109.47718 * 62.37070 * 26 25 14 50 50 H 1.08996 * 109.49638 * 178.68503 * 28 10 9 51 51 H 1.08997 * 109.50160 * 58.58619 * 28 10 9 52 52 H 1.08998 * 109.59009 * 246.15627 * 29 7 5 53 53 H 1.09003 * 109.58381 * 6.44334 * 29 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1484 2.5614 -0.0013 6 8 3.4356 3.5426 -0.0008 7 7 5.4889 2.7022 -0.0024 8 6 6.3655 1.5231 0.0031 9 6 7.3508 1.6411 1.1644 10 6 8.0929 2.9760 1.0673 11 6 9.1026 3.0823 2.2118 12 1 8.5780 3.0276 3.1656 13 6 10.1075 1.9315 2.1147 14 6 11.1499 2.0788 3.2274 15 1 11.9004 1.2943 3.1301 16 7 10.4942 1.9705 4.5330 17 6 11.2118 1.5702 5.6285 18 1 12.2611 1.3340 5.5298 19 6 10.5905 1.4671 6.8655 20 7 9.3117 1.7545 6.9855 21 14 11.5693 0.9204 8.3596 22 1 12.6842 1.8723 8.5964 23 1 10.6815 0.8926 9.5498 24 1 12.1203 -0.4377 8.1207 25 6 11.8222 3.4495 3.1037 26 6 10.7512 4.5418 3.1626 27 8 9.7970 4.3280 2.1206 28 6 7.0895 4.1276 1.1640 29 6 6.1012 4.0377 -0.0036 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.6886 1.8464 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 3.8567 0.6439 -0.8909 36 1 3.8574 0.6435 0.8890 37 1 5.7648 0.6217 0.1254 38 1 6.9163 1.4729 -0.9362 39 1 8.0683 0.8219 1.1189 40 1 6.8054 1.5958 2.1070 41 1 8.6180 3.0310 0.1137 42 1 9.5852 0.9814 2.2282 43 1 10.6034 1.9618 1.1445 44 1 9.5518 2.1824 4.6216 45 1 8.8773 1.6820 7.8499 46 1 12.3529 3.5105 2.1536 47 1 12.5264 3.5852 3.9246 48 1 11.2194 5.5174 3.0322 49 1 10.2483 4.5060 4.1291 50 1 7.6210 5.0780 1.1182 51 1 6.5466 4.0589 2.1066 52 1 6.6301 4.1964 -0.9434 53 1 5.3260 4.7952 0.1118 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186041287.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:30 Heat of formation + Delta-G solvation = -149.383088 kcal Electronic energy + Delta-G solvation = -31007.152981 eV Core-core repulsion = 26877.712985 eV Total energy + Delta-G solvation = -4129.439995 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.47579 -40.58642 -38.90899 -38.26935 -36.51915 -34.82553 -34.05813 -33.23251 -31.77948 -31.09467 -30.79553 -27.74683 -26.94386 -25.78363 -25.08095 -24.54934 -23.98564 -23.06449 -21.43879 -20.38603 -19.85273 -19.23779 -18.50309 -17.40007 -17.27023 -17.02560 -16.93365 -16.68736 -16.49804 -16.18975 -15.82500 -15.67833 -15.46208 -15.34066 -14.85495 -14.83583 -14.63856 -14.37218 -14.17395 -13.77578 -13.73690 -13.53325 -13.34789 -12.96261 -12.81406 -12.76932 -12.69837 -12.49985 -12.42288 -12.19661 -12.18339 -12.12685 -11.97330 -11.84725 -11.72651 -11.51357 -11.41739 -11.00250 -10.88850 -10.87146 -10.68869 -10.20204 -9.66947 -8.99320 -7.93889 -5.21412 1.46258 1.48111 1.53726 1.54212 1.87792 2.55843 2.80207 2.87174 3.39113 3.58908 3.66741 3.78283 3.92102 3.99183 4.01680 4.03663 4.13402 4.17107 4.22157 4.28939 4.33452 4.37678 4.42651 4.45811 4.50924 4.51185 4.54806 4.61637 4.69017 4.77425 4.79580 4.83543 4.84960 4.86494 4.88972 4.92420 4.97860 5.08450 5.09237 5.18157 5.23628 5.27705 5.31023 5.39756 5.49049 5.54247 5.57252 6.12703 6.28215 6.35868 6.38941 7.08394 7.34589 8.11169 8.33925 9.29197 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.011854 B = 0.002565 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2361.540487 B =10912.094171 C =12513.371204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.409 6.409 3 C 0.078 3.922 4 C -0.133 4.133 5 C 0.516 3.484 6 O -0.589 6.589 7 N -0.608 5.608 8 C 0.109 3.891 9 C -0.131 4.131 10 C -0.066 4.066 11 C 0.102 3.898 12 H 0.024 0.976 13 C -0.141 4.141 14 C 0.159 3.841 15 H 0.048 0.952 16 N -0.731 5.731 17 C -0.235 4.235 18 H 0.074 0.926 19 C -0.075 4.075 20 N -0.970 5.970 21 Si 0.968 3.032 22 H -0.281 1.281 23 H -0.299 1.299 24 H -0.278 1.278 25 C -0.162 4.162 26 C 0.074 3.926 27 O -0.385 6.385 28 C -0.119 4.119 29 C 0.116 3.884 30 H 0.103 0.897 31 H 0.044 0.956 32 H 0.050 0.950 33 H 0.044 0.956 34 H 0.054 0.946 35 H 0.127 0.873 36 H 0.113 0.887 37 H 0.109 0.891 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.049 0.951 41 H 0.098 0.902 42 H 0.076 0.924 43 H 0.094 0.906 44 H 0.371 0.629 45 H 0.249 0.751 46 H 0.081 0.919 47 H 0.052 0.948 48 H 0.101 0.899 49 H 0.021 0.979 50 H 0.080 0.920 51 H 0.039 0.961 52 H 0.090 0.910 53 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.741 -1.616 -20.514 22.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.329 6.329 3 C 0.001 3.999 4 C -0.173 4.173 5 C 0.305 3.695 6 O -0.470 6.470 7 N -0.340 5.340 8 C -0.013 4.013 9 C -0.169 4.169 10 C -0.084 4.084 11 C 0.044 3.956 12 H 0.042 0.958 13 C -0.179 4.179 14 C 0.051 3.949 15 H 0.066 0.934 16 N -0.372 5.372 17 C -0.367 4.367 18 H 0.092 0.908 19 C -0.267 4.267 20 N -0.621 5.621 21 Si 0.797 3.203 22 H -0.207 1.207 23 H -0.226 1.226 24 H -0.204 1.204 25 C -0.202 4.202 26 C -0.003 4.003 27 O -0.304 6.304 28 C -0.158 4.158 29 C -0.006 4.006 30 H 0.121 0.879 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.145 0.855 36 H 0.131 0.869 37 H 0.127 0.873 38 H 0.118 0.882 39 H 0.116 0.884 40 H 0.068 0.932 41 H 0.116 0.884 42 H 0.094 0.906 43 H 0.113 0.887 44 H 0.204 0.796 45 H 0.058 0.942 46 H 0.100 0.900 47 H 0.071 0.929 48 H 0.119 0.881 49 H 0.040 0.960 50 H 0.099 0.901 51 H 0.058 0.942 52 H 0.108 0.892 53 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.876 -1.216 -20.566 22.432 hybrid contribution 0.019 0.171 2.040 2.048 sum -8.857 -1.045 -18.525 20.560 Atomic orbital electron populations 1.22939 0.79285 1.04062 1.00749 1.87773 1.21609 1.27871 1.95622 1.22100 0.92666 0.84186 1.00946 1.21498 0.94612 0.93917 1.07263 1.20845 0.82120 0.91567 0.74931 1.90677 1.61503 1.42390 1.52435 1.48251 1.05288 1.08456 1.72037 1.21942 0.92416 0.87494 0.99446 1.21937 0.98725 0.97403 0.98871 1.21066 0.94019 0.95125 0.98212 1.21990 0.92129 0.83877 0.97565 0.95840 1.22387 0.97457 0.98934 0.99119 1.20561 0.94317 0.94836 0.85172 0.93421 1.42644 1.09812 1.80691 1.04068 1.19566 0.93763 1.35323 0.88041 0.90763 1.25476 0.96907 1.03884 1.00472 1.69803 1.10873 1.57342 1.24047 0.85293 0.77407 0.78372 0.79194 1.20685 1.22563 1.20383 1.22639 0.98416 0.97639 1.01497 1.22352 0.89585 0.98800 0.89537 1.87761 1.54728 1.37858 1.50059 1.21813 0.96480 0.99810 0.97655 1.21595 0.95896 0.84112 0.98985 0.87872 0.93740 0.93115 0.93791 0.92744 0.85465 0.86853 0.87276 0.88227 0.88404 0.93223 0.88382 0.90563 0.88717 0.79590 0.94242 0.90041 0.92910 0.88075 0.96014 0.90148 0.94188 0.89179 0.90796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 113.37 1.25 1.60 16 2 O -0.41 -7.89 10.70 -148.98 -1.59 -9.49 16 3 C 0.08 1.52 5.23 71.98 0.38 1.90 16 4 C -0.13 -2.23 4.42 29.85 0.13 -2.09 16 5 C 0.52 11.73 7.70 87.66 0.67 12.41 16 6 O -0.59 -18.10 15.39 -3.03 -0.05 -18.15 16 7 N -0.61 -11.92 2.98 -819.64 -2.44 -14.36 16 8 C 0.11 1.50 6.31 86.22 0.54 2.04 16 9 C -0.13 -2.51 5.03 30.53 0.15 -2.36 16 10 C -0.07 -1.46 1.95 -10.77 -0.02 -1.49 16 11 C 0.10 3.09 2.05 30.62 0.06 3.15 16 12 H 0.02 0.91 6.72 -2.39 -0.02 0.89 16 13 C -0.14 -4.11 4.65 30.68 0.14 -3.97 16 14 C 0.16 5.94 3.13 45.11 0.14 6.08 16 15 H 0.05 1.79 8.08 -2.39 -0.02 1.78 16 16 N -0.73 -35.30 4.45 -322.36 -1.43 -36.73 16 17 C -0.23 -12.69 9.93 84.03 0.83 -11.85 16 18 H 0.07 3.85 7.83 -2.91 -0.02 3.83 16 19 C -0.08 -4.26 5.50 84.86 0.47 -3.79 16 20 N -0.97 -58.90 13.06 21.65 0.28 -58.62 16 21 Si 0.97 45.82 29.55 68.60 2.03 47.85 16 22 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 23 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 24 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 25 C -0.16 -5.45 5.81 30.68 0.18 -5.28 16 26 C 0.07 2.52 6.68 72.01 0.48 3.00 16 27 O -0.38 -12.30 9.71 -148.98 -1.45 -13.75 16 28 C -0.12 -2.86 5.23 30.69 0.16 -2.69 16 29 C 0.12 2.43 6.44 86.38 0.56 2.99 16 30 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.04 0.96 8.10 -2.38 -0.02 0.94 16 34 H 0.05 1.07 8.10 -2.38 -0.02 1.05 16 35 H 0.13 1.48 7.95 -2.38 -0.02 1.46 16 36 H 0.11 1.72 7.68 -2.39 -0.02 1.70 16 37 H 0.11 1.09 5.94 -2.39 -0.01 1.08 16 38 H 0.10 0.93 8.14 -2.38 -0.02 0.91 16 39 H 0.10 1.66 6.42 -2.39 -0.02 1.65 16 40 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.08 2.20 6.54 -2.39 -0.02 2.19 16 43 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 44 H 0.37 19.54 6.28 -92.71 -0.58 18.95 16 45 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 46 H 0.08 2.28 8.14 -2.39 -0.02 2.27 16 47 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 48 H 0.10 2.94 8.14 -2.39 -0.02 2.92 16 49 H 0.02 0.90 7.75 -2.38 -0.02 0.88 16 50 H 0.08 1.99 7.64 -2.39 -0.02 1.97 16 51 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 52 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 53 H 0.07 1.83 7.00 -2.39 -0.02 1.81 16 Total: -1.00 -70.95 406.28 1.78 -69.17 By element: Atomic # 1 Polarization: 34.15 SS G_CDS: 0.30 Total: 34.45 kcal Atomic # 6 Polarization: -6.50 SS G_CDS: 6.13 Total: -0.37 kcal Atomic # 7 Polarization: -106.12 SS G_CDS: -3.59 Total: -109.71 kcal Atomic # 8 Polarization: -38.30 SS G_CDS: -3.09 Total: -41.39 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Total: -70.95 1.78 -69.17 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186041287.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.212 kcal (2) G-P(sol) polarization free energy of solvation -70.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds