Wall clock time and date at job start Sat Apr 11 2020 06:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 113.99933 * 2 1 4 4 C 1.52996 * 109.47008 * 179.97438 * 3 2 1 5 5 C 1.50703 * 109.47114 * 180.02562 * 4 3 2 6 6 O 1.21275 * 119.99839 * 0.02562 * 5 4 3 7 7 N 1.34778 * 120.00205 * 180.02562 * 5 4 3 8 8 C 1.46920 * 120.63229 * 179.97438 * 7 5 4 9 9 C 1.53196 * 108.77435 * 126.37018 * 8 7 5 10 10 C 1.53037 * 109.31040 * 54.63686 * 9 8 7 11 11 C 1.53002 * 109.45877 * 178.61574 * 10 9 8 12 12 H 1.09004 * 109.48191 * 60.02681 * 11 10 9 13 13 C 1.53090 * 109.48034 * 180.02562 * 11 10 9 14 14 C 1.53180 * 109.16289 * 177.59094 * 13 11 10 15 15 H 1.08997 * 109.54401 * 62.88927 * 14 13 11 16 16 N 1.46502 * 109.61585 * 183.10990 * 14 13 11 17 17 C 1.36939 * 119.99915 * 204.59970 * 16 14 13 18 18 H 1.08001 * 120.00071 * 0.02562 * 17 16 14 19 19 C 1.38816 * 119.99696 * 180.02562 * 17 16 14 20 20 N 1.31610 * 120.00355 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99638 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47473 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47233 * 119.99854 * 21 19 17 24 24 H 1.48505 * 109.46782 * 239.99858 * 21 19 17 25 25 C 1.53179 * 109.03731 * 303.01798 * 14 13 11 26 26 C 1.53101 * 109.15909 * 56.98165 * 25 14 13 27 27 O 1.42898 * 109.41469 * 302.39206 * 26 25 14 28 28 C 1.53040 * 109.54181 * 298.63376 * 10 9 8 29 29 C 1.46926 * 120.62819 * 359.97438 * 7 5 4 30 30 H 1.08999 * 109.47531 * 300.00302 * 1 2 3 31 31 H 1.09001 * 109.47048 * 59.99856 * 1 2 3 32 32 H 1.09000 * 109.47137 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47221 * 59.99672 * 3 2 1 34 34 H 1.08994 * 109.47270 * 299.99685 * 3 2 1 35 35 H 1.09004 * 109.46932 * 60.00066 * 4 3 2 36 36 H 1.09002 * 109.47530 * 299.99969 * 4 3 2 37 37 H 1.08998 * 109.58534 * 6.58582 * 8 7 5 38 38 H 1.08995 * 109.70522 * 246.22724 * 8 7 5 39 39 H 1.08999 * 109.50112 * 174.59220 * 9 8 7 40 40 H 1.09004 * 109.49641 * 294.68461 * 9 8 7 41 41 H 1.09000 * 109.46257 * 58.65576 * 10 9 8 42 42 H 1.08992 * 109.52664 * 297.49621 * 13 11 10 43 43 H 1.09000 * 109.52285 * 57.68638 * 13 11 10 44 44 H 0.96999 * 120.00051 * 24.60324 * 16 14 13 45 45 H 0.96996 * 120.00626 * 180.02562 * 20 19 17 46 46 H 1.08995 * 109.52725 * 297.07752 * 25 14 13 47 47 H 1.09002 * 109.52308 * 176.88406 * 25 14 13 48 48 H 1.09000 * 109.47938 * 182.40848 * 26 25 14 49 49 H 1.09004 * 109.48564 * 62.37585 * 26 25 14 50 50 H 1.09003 * 109.49938 * 301.42120 * 28 10 9 51 51 H 1.08991 * 109.53248 * 181.33418 * 28 10 9 52 52 H 1.08998 * 109.58617 * 353.41260 * 29 7 5 53 53 H 1.08995 * 109.59240 * 113.84037 * 29 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1484 2.5614 0.0013 6 8 3.4355 3.5425 0.0017 7 7 5.4888 2.7023 0.0014 8 6 6.1011 4.0378 0.0014 9 6 7.0883 4.1276 1.1694 10 6 8.0918 2.9761 1.0735 11 6 9.1005 3.0822 2.2190 12 1 8.5750 3.0273 3.1724 13 6 10.1049 1.9309 2.1231 14 6 11.1463 2.0781 3.2368 15 1 10.6562 1.9985 4.2071 16 7 12.1551 1.0234 3.1094 17 6 12.8703 0.6238 4.2067 18 1 12.6903 1.0859 5.1661 19 6 13.8265 -0.3752 4.0858 20 7 14.0455 -0.9386 2.9167 21 14 14.8015 -0.9208 5.5828 22 1 14.3686 -0.1376 6.7679 23 1 14.5627 -2.3656 5.8295 24 1 16.2488 -0.6925 5.3409 25 6 11.8194 3.4485 3.1135 26 6 10.7487 4.5413 3.1711 27 8 9.7953 4.3276 2.1283 28 6 7.3497 1.6411 1.1698 29 6 6.3654 1.5232 0.0015 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6886 1.8464 0.8900 34 1 1.6887 1.8464 -0.8900 35 1 3.8574 0.6436 -0.8892 36 1 3.8568 0.6439 0.8909 37 1 5.3260 4.7951 0.1192 38 1 6.6303 4.1995 -0.9376 39 1 7.6199 5.0781 1.1244 40 1 6.5445 4.0587 2.1116 41 1 8.6178 3.0312 0.1204 42 1 9.5823 0.9812 2.2364 43 1 10.6019 1.9609 1.1535 44 1 12.3165 0.6082 2.2477 45 1 14.7133 -1.6369 2.8322 46 1 12.3510 3.5092 2.1639 47 1 12.5228 3.5841 3.9351 48 1 11.2174 5.5167 3.0409 49 1 10.2448 4.5060 4.1371 50 1 6.8033 1.5956 2.1119 51 1 8.0668 0.8215 1.1253 52 1 5.7647 0.6213 0.1192 53 1 6.9166 1.4776 -0.9377 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186041288.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:34 Heat of formation + Delta-G solvation = -152.097635 kcal Electronic energy + Delta-G solvation = -30437.582311 eV Core-core repulsion = 26308.024604 eV Total energy + Delta-G solvation = -4129.557707 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.45733 -40.52043 -38.89374 -38.24888 -36.73340 -34.84058 -34.08121 -33.22718 -31.76747 -31.19194 -30.86192 -27.74221 -26.98829 -25.90671 -24.75344 -24.53444 -23.68081 -22.89567 -21.37120 -21.13713 -19.87904 -19.18019 -18.50905 -17.40764 -17.30133 -17.06397 -17.05373 -16.52153 -16.45617 -16.16607 -15.81321 -15.65370 -15.48077 -15.22698 -14.91128 -14.84776 -14.68083 -14.41375 -14.21862 -14.06631 -13.75980 -13.54715 -13.24905 -12.96265 -12.90570 -12.74076 -12.59598 -12.41980 -12.28980 -12.19739 -12.17740 -12.11246 -11.96536 -11.91264 -11.76733 -11.51126 -11.41277 -11.03454 -10.88861 -10.86838 -10.68105 -10.39305 -9.67698 -9.01927 -7.95379 -5.23810 1.46544 1.46823 1.54684 1.56614 1.87186 2.54527 2.79419 2.85859 3.37403 3.56199 3.60749 3.78329 3.92924 3.99055 4.01762 4.03106 4.05724 4.15784 4.20986 4.26602 4.29938 4.40646 4.42441 4.46292 4.51548 4.51784 4.55747 4.59566 4.67220 4.78434 4.79080 4.80654 4.83165 4.85893 4.88315 4.89600 4.92692 4.99674 5.04731 5.12113 5.18447 5.25434 5.36269 5.46374 5.48886 5.55032 5.58559 6.13723 6.26817 6.35315 6.36748 7.08773 7.33014 8.08626 8.32316 9.28092 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014369 B = 0.002131 C = 0.001918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.223342 B =13134.160400 C =14592.391954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.410 6.410 3 C 0.078 3.922 4 C -0.134 4.134 5 C 0.518 3.482 6 O -0.587 6.587 7 N -0.607 5.607 8 C 0.113 3.887 9 C -0.114 4.114 10 C -0.071 4.071 11 C 0.106 3.894 12 H 0.058 0.942 13 C -0.141 4.141 14 C 0.168 3.832 15 H 0.040 0.960 16 N -0.735 5.735 17 C -0.238 4.238 18 H 0.074 0.926 19 C -0.076 4.076 20 N -0.968 5.968 21 Si 0.970 3.030 22 H -0.267 1.267 23 H -0.293 1.293 24 H -0.295 1.295 25 C -0.164 4.164 26 C 0.072 3.928 27 O -0.387 6.387 28 C -0.131 4.131 29 C 0.106 3.894 30 H 0.047 0.953 31 H 0.048 0.952 32 H 0.102 0.898 33 H 0.048 0.952 34 H 0.051 0.949 35 H 0.122 0.878 36 H 0.118 0.882 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.058 0.942 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.059 0.941 44 H 0.372 0.628 45 H 0.251 0.749 46 H 0.048 0.952 47 H 0.054 0.946 48 H 0.106 0.894 49 H 0.055 0.945 50 H 0.069 0.931 51 H 0.088 0.912 52 H 0.111 0.889 53 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.523 6.847 -7.160 25.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.330 6.330 3 C 0.001 3.999 4 C -0.174 4.174 5 C 0.307 3.693 6 O -0.468 6.468 7 N -0.339 5.339 8 C -0.010 4.010 9 C -0.153 4.153 10 C -0.089 4.089 11 C 0.048 3.952 12 H 0.075 0.925 13 C -0.179 4.179 14 C 0.060 3.940 15 H 0.058 0.942 16 N -0.374 5.374 17 C -0.370 4.370 18 H 0.092 0.908 19 C -0.268 4.268 20 N -0.619 5.619 21 Si 0.799 3.201 22 H -0.191 1.191 23 H -0.220 1.220 24 H -0.223 1.223 25 C -0.205 4.205 26 C -0.005 4.005 27 O -0.306 6.306 28 C -0.169 4.169 29 C -0.016 4.016 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.120 0.880 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.140 0.860 36 H 0.136 0.864 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.101 0.899 40 H 0.077 0.923 41 H 0.098 0.902 42 H 0.096 0.904 43 H 0.078 0.922 44 H 0.204 0.796 45 H 0.059 0.941 46 H 0.067 0.933 47 H 0.073 0.927 48 H 0.124 0.876 49 H 0.073 0.927 50 H 0.088 0.912 51 H 0.106 0.894 52 H 0.129 0.871 53 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -23.760 7.308 -7.113 25.856 hybrid contribution 1.134 -0.483 0.741 1.439 sum -22.626 6.825 -6.372 24.476 Atomic orbital electron populations 1.22937 0.79283 1.04025 1.00781 1.87777 1.21605 1.27968 1.95628 1.22105 0.92631 0.84147 1.01010 1.21507 0.94625 0.94002 1.07258 1.20795 0.82026 0.91502 0.74929 1.90679 1.61431 1.42325 1.52389 1.48229 1.05250 1.08352 1.72105 1.21605 0.96144 0.84107 0.99113 1.21786 0.96046 0.99379 0.98048 1.21067 0.94245 0.95616 0.98015 1.22071 0.91394 0.82885 0.98848 0.92453 1.22408 0.97052 0.99661 0.98803 1.20478 0.89148 0.87541 0.96825 0.94202 1.42613 1.43420 1.42628 1.08771 1.19628 1.13090 1.14225 0.90017 0.90842 1.25525 1.01638 1.00211 0.99440 1.69808 1.37812 1.30052 1.24232 0.85128 0.78018 0.77557 0.79394 1.19129 1.21999 1.22258 1.22771 0.99145 0.97292 1.01248 1.22563 0.88943 0.98447 0.90562 1.87825 1.54550 1.37433 1.50788 1.22010 0.98465 0.97045 0.99341 1.22003 0.92525 0.87687 0.99336 0.93466 0.93303 0.87989 0.93339 0.93053 0.86034 0.86405 0.90361 0.90266 0.89945 0.92342 0.90158 0.90404 0.92182 0.79574 0.94060 0.93300 0.92738 0.87629 0.92654 0.91184 0.89372 0.87098 0.89491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 113.37 1.25 1.54 16 2 O -0.41 -7.02 10.70 -148.98 -1.59 -8.61 16 3 C 0.08 1.31 5.23 71.98 0.38 1.69 16 4 C -0.13 -1.88 4.42 29.85 0.13 -1.75 16 5 C 0.52 10.12 7.70 87.66 0.67 10.80 16 6 O -0.59 -16.01 15.39 -3.02 -0.05 -16.06 16 7 N -0.61 -10.17 2.97 -818.87 -2.43 -12.60 16 8 C 0.11 2.00 6.43 86.37 0.56 2.55 16 9 C -0.11 -2.09 5.23 30.67 0.16 -1.93 16 10 C -0.07 -1.35 1.95 -10.77 -0.02 -1.37 16 11 C 0.11 2.60 2.22 30.63 0.07 2.67 16 12 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 13 C -0.14 -4.27 4.47 30.68 0.14 -4.13 16 14 C 0.17 6.43 2.86 45.11 0.13 6.56 16 15 H 0.04 1.56 8.08 -2.39 -0.02 1.54 16 16 N -0.74 -36.30 5.13 -322.36 -1.65 -37.96 16 17 C -0.24 -12.99 9.93 84.03 0.83 -12.15 16 18 H 0.07 3.88 7.83 -2.91 -0.02 3.86 16 19 C -0.08 -4.31 5.50 84.86 0.47 -3.84 16 20 N -0.97 -58.55 13.06 21.65 0.28 -58.27 16 21 Si 0.97 45.66 29.55 68.60 2.03 47.68 16 22 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 23 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 24 H -0.30 -13.97 7.11 99.48 0.71 -13.27 16 25 C -0.16 -5.69 5.72 30.69 0.18 -5.52 16 26 C 0.07 1.92 6.84 72.02 0.49 2.41 16 27 O -0.39 -10.40 9.71 -148.98 -1.45 -11.85 16 28 C -0.13 -2.04 5.04 30.68 0.15 -1.89 16 29 C 0.11 1.31 6.34 86.37 0.55 1.86 16 30 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.05 0.88 8.10 -2.38 -0.02 0.87 16 34 H 0.05 0.90 8.10 -2.39 -0.02 0.89 16 35 H 0.12 1.25 7.94 -2.38 -0.02 1.24 16 36 H 0.12 1.34 7.69 -2.39 -0.02 1.32 16 37 H 0.08 1.63 7.00 -2.39 -0.02 1.61 16 38 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.08 1.58 7.64 -2.39 -0.02 1.56 16 40 H 0.06 1.14 8.14 -2.39 -0.02 1.13 16 41 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.08 2.28 6.54 -2.39 -0.02 2.27 16 43 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 44 H 0.37 19.81 7.80 -92.71 -0.72 19.09 16 45 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 46 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 47 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 48 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 49 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 50 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 51 H 0.09 1.44 6.42 -2.39 -0.02 1.42 16 52 H 0.11 0.92 5.93 -2.39 -0.01 0.90 16 53 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -70.01 410.13 1.42 -68.59 By element: Atomic # 1 Polarization: 31.41 SS G_CDS: 0.16 Total: 31.57 kcal Atomic # 6 Polarization: -8.64 SS G_CDS: 6.13 Total: -2.50 kcal Atomic # 7 Polarization: -105.02 SS G_CDS: -3.80 Total: -108.82 kcal Atomic # 8 Polarization: -33.43 SS G_CDS: -3.09 Total: -36.51 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.68 kcal Total: -70.01 1.42 -68.59 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186041288.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.509 kcal (2) G-P(sol) polarization free energy of solvation -70.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds