Wall clock time and date at job start Sat Apr 11 2020 06:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42901 * 113.99842 * 2 1 4 4 C 1.53003 * 109.46709 * 179.97438 * 3 2 1 5 5 C 1.50695 * 110.43791 * 294.66101 * 4 3 2 6 6 O 1.21288 * 119.99880 * 115.13299 * 5 4 3 7 7 N 1.34776 * 120.00141 * 295.14066 * 5 4 3 8 8 C 1.47510 * 118.75813 * 354.73400 * 7 5 4 9 9 C 1.53571 * 111.02639 * 138.37762 * 8 7 5 10 10 C 1.51542 * 109.57940 * 320.02424 * 9 8 7 11 11 O 1.42149 * 108.76248 * 91.40123 * 10 9 8 12 12 C 1.38015 * 119.43846 * 272.77037 * 11 10 9 13 13 H 1.08994 * 109.47195 * 303.43361 * 12 11 10 14 14 C 1.52994 * 109.47213 * 183.42858 * 12 11 10 15 15 N 1.46499 * 109.46884 * 65.00238 * 14 12 11 16 16 C 1.36937 * 120.00066 * 180.02562 * 15 14 12 17 17 H 1.08001 * 119.99858 * 359.97438 * 16 15 14 18 18 C 1.38814 * 120.00206 * 180.02562 * 16 15 14 19 19 N 1.31613 * 119.99772 * 359.72025 * 18 16 15 20 20 Si 1.86801 * 119.99875 * 179.97438 * 18 16 15 21 21 H 1.48491 * 109.47084 * 269.72031 * 20 18 16 22 22 H 1.48502 * 109.47199 * 29.72589 * 20 18 16 23 23 H 1.48504 * 109.46989 * 149.72255 * 20 18 16 24 24 C 1.45123 * 118.76094 * 174.74024 * 7 5 4 25 25 C 1.54886 * 110.59688 * 57.28460 * 4 3 2 26 26 C 1.54893 * 102.74908 * 156.67257 * 25 4 3 27 27 C 1.54260 * 104.19541 * 322.05672 * 26 25 4 28 28 C 1.53875 * 106.60120 * 23.60752 * 27 26 25 29 29 H 1.08998 * 109.47239 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47111 * 300.00015 * 1 2 3 31 31 H 1.09000 * 109.46867 * 59.99830 * 1 2 3 32 32 H 1.09003 * 109.47226 * 60.00177 * 3 2 1 33 33 H 1.08996 * 109.47656 * 300.00021 * 3 2 1 34 34 H 1.09001 * 109.16500 * 17.97930 * 8 7 5 35 35 H 1.08994 * 109.16936 * 258.77703 * 8 7 5 36 36 H 1.08997 * 109.45583 * 199.99372 * 9 8 7 37 37 H 1.08996 * 109.45439 * 80.05021 * 9 8 7 38 38 H 1.08996 * 109.58934 * 331.61225 * 10 9 8 39 39 H 1.09008 * 109.58621 * 211.18345 * 10 9 8 40 40 H 1.09003 * 109.47420 * 305.00501 * 14 12 11 41 41 H 1.08996 * 109.47107 * 184.99891 * 14 12 11 42 42 H 0.96996 * 120.00451 * 359.97438 * 15 14 12 43 43 H 0.96999 * 120.00617 * 0.27374 * 19 18 16 44 44 H 1.08997 * 109.46320 * 149.26217 * 24 7 5 45 45 H 1.09005 * 109.45739 * 29.30460 * 24 7 5 46 46 H 1.09003 * 110.75310 * 274.98649 * 25 4 3 47 47 H 1.08993 * 110.75815 * 38.35925 * 25 4 3 48 48 H 1.08994 * 110.48788 * 203.37257 * 26 25 4 49 49 H 1.09001 * 110.59425 * 80.78959 * 26 25 4 50 50 H 1.08997 * 110.03139 * 264.32449 * 27 26 25 51 51 H 1.09006 * 110.07704 * 142.91315 * 27 26 25 52 52 H 1.08996 * 110.03777 * 240.71831 * 28 27 26 53 53 H 1.09006 * 110.07451 * 119.30447 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.0130 0.5559 1.2843 6 8 4.5590 -0.5269 1.2627 7 7 3.8332 1.1968 2.4562 8 6 3.2735 2.5615 2.4402 9 6 2.2452 2.7485 3.5654 10 6 1.4010 1.4967 3.6950 11 8 2.0086 0.6318 4.6455 12 6 2.9754 -0.2609 4.2295 13 1 2.5694 -0.8951 3.4415 14 6 3.4091 -1.1304 5.4113 15 7 2.2815 -1.9566 5.8494 16 6 2.4336 -2.8208 6.9007 17 1 3.3850 -2.8935 7.4066 18 6 1.3653 -3.6041 7.3155 19 7 0.2046 -3.5122 6.7018 20 14 1.5730 -4.7834 8.7492 21 1 2.0168 -6.1064 8.2416 22 1 2.5907 -4.2467 9.6882 23 1 0.2767 -4.9345 9.4577 24 6 4.1978 0.5183 3.6862 25 6 4.0172 0.3602 -1.2189 26 6 5.4787 0.8404 -1.4003 27 6 5.4223 2.3500 -1.0882 28 6 4.1868 2.5690 -0.1975 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6887 1.8464 -0.8899 34 1 2.7893 2.7384 1.4798 35 1 4.0815 3.2813 2.5705 36 1 1.6024 3.5973 3.3324 37 1 2.7652 2.9344 4.5051 38 1 1.3413 0.9946 2.7295 39 1 0.3996 1.7647 4.0324 40 1 3.7322 -0.4914 6.2332 41 1 4.2339 -1.7740 5.1054 42 1 1.4269 -1.8911 5.3953 43 1 0.0967 -2.9001 5.9571 44 1 4.5179 1.2529 4.4250 45 1 5.0135 -0.1774 3.4891 46 1 3.9857 -0.7072 -1.0003 47 1 3.4219 0.5926 -2.1018 48 1 5.8101 0.6748 -2.4253 49 1 6.1396 0.3303 -0.6995 50 1 5.3218 2.9189 -2.0125 51 1 6.3240 2.6563 -0.5577 52 1 3.4867 3.2440 -0.6895 53 1 4.4882 2.9810 0.7657 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200653145.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:14 Heat of formation + Delta-G solvation = -123.497294 kcal Electronic energy + Delta-G solvation = -33030.469038 eV Core-core repulsion = 28902.151535 eV Total energy + Delta-G solvation = -4128.317503 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.40332 -40.35649 -38.88392 -37.79682 -37.21484 -36.51211 -34.51515 -32.64871 -32.13838 -30.22960 -29.72010 -27.88881 -27.52069 -26.64753 -25.43952 -24.96920 -23.47199 -22.49524 -22.02988 -21.29377 -19.89372 -19.44103 -18.28597 -17.90846 -17.71855 -17.45441 -17.14045 -16.84134 -16.68723 -16.40538 -15.89905 -15.75423 -15.63869 -15.39691 -15.00556 -14.94047 -14.65320 -14.42132 -14.23229 -14.00729 -13.71211 -13.48965 -13.34687 -12.85449 -12.77018 -12.62102 -12.61148 -12.50073 -12.39052 -12.34809 -12.12580 -11.93484 -11.91845 -11.86681 -11.74162 -11.56380 -11.35720 -11.28384 -11.00965 -10.86906 -10.65595 -10.46897 -9.70732 -9.17203 -8.45165 -5.38040 1.51525 1.55858 1.68272 1.82501 1.85316 2.59369 2.64624 2.69194 3.23525 3.36984 3.46641 3.56378 3.60006 3.69164 3.80049 3.89060 3.94063 3.99812 4.05990 4.18137 4.19572 4.26201 4.32992 4.34618 4.41916 4.45267 4.48450 4.49603 4.51144 4.57861 4.61330 4.67001 4.73407 4.74591 4.78782 4.79786 4.89050 4.95591 5.01884 5.04973 5.07523 5.12200 5.20981 5.30850 5.45053 5.47558 5.52115 6.11874 6.25277 6.43276 6.61736 7.03223 7.10390 7.93038 8.06502 9.06565 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.015737 B = 0.003105 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.846614 B = 9016.759041 C = 9101.567603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.417 6.417 3 C 0.061 3.939 4 C -0.082 4.082 5 C 0.521 3.479 6 O -0.579 6.579 7 N -0.608 5.608 8 C 0.085 3.915 9 C -0.160 4.160 10 C 0.061 3.939 11 O -0.397 6.397 12 C 0.109 3.891 13 H 0.012 0.988 14 C 0.169 3.831 15 N -0.751 5.751 16 C -0.339 4.339 17 H 0.069 0.931 18 C -0.106 4.106 19 N -0.972 5.972 20 Si 1.136 2.864 21 H -0.284 1.284 22 H -0.270 1.270 23 H -0.289 1.289 24 C 0.095 3.905 25 C -0.094 4.094 26 C -0.128 4.128 27 C -0.118 4.118 28 C -0.119 4.119 29 H 0.077 0.923 30 H 0.044 0.956 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.097 0.903 34 H 0.116 0.884 35 H 0.100 0.900 36 H 0.126 0.874 37 H 0.077 0.923 38 H 0.041 0.959 39 H 0.097 0.903 40 H 0.033 0.967 41 H 0.030 0.970 42 H 0.359 0.641 43 H 0.241 0.759 44 H 0.104 0.896 45 H 0.074 0.926 46 H 0.041 0.959 47 H 0.094 0.906 48 H 0.080 0.920 49 H 0.037 0.963 50 H 0.093 0.907 51 H 0.065 0.935 52 H 0.115 0.885 53 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.750 23.465 -19.723 31.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.337 6.337 3 C -0.015 4.015 4 C -0.085 4.085 5 C 0.311 3.689 6 O -0.457 6.457 7 N -0.340 5.340 8 C -0.035 4.035 9 C -0.197 4.197 10 C -0.015 4.015 11 O -0.316 6.316 12 C 0.049 3.951 13 H 0.030 0.970 14 C 0.042 3.958 15 N -0.396 5.396 16 C -0.470 4.470 17 H 0.087 0.913 18 C -0.297 4.297 19 N -0.620 5.620 20 Si 0.960 3.040 21 H -0.211 1.211 22 H -0.195 1.195 23 H -0.215 1.215 24 C -0.030 4.030 25 C -0.132 4.132 26 C -0.166 4.166 27 C -0.156 4.156 28 C -0.156 4.156 29 H 0.095 0.905 30 H 0.063 0.937 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.114 0.886 34 H 0.133 0.867 35 H 0.118 0.882 36 H 0.144 0.856 37 H 0.096 0.904 38 H 0.060 0.940 39 H 0.115 0.885 40 H 0.051 0.949 41 H 0.048 0.952 42 H 0.191 0.809 43 H 0.051 0.949 44 H 0.123 0.877 45 H 0.093 0.907 46 H 0.060 0.940 47 H 0.112 0.888 48 H 0.099 0.901 49 H 0.056 0.944 50 H 0.111 0.889 51 H 0.083 0.917 52 H 0.133 0.867 53 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 5.593 21.666 -18.482 29.022 hybrid contribution 0.308 0.478 -1.132 1.267 sum 5.901 22.144 -19.614 30.164 Atomic orbital electron populations 1.22874 0.79567 1.03186 1.01251 1.87983 1.21288 1.28822 1.95616 1.23074 0.90209 0.85210 1.03046 1.21747 0.95270 0.99158 0.92315 1.21087 0.77335 0.84455 0.86032 1.90669 1.44295 1.23398 1.87384 1.47930 1.63674 1.17366 1.05048 1.22834 0.97828 0.81168 1.01626 1.22508 0.98562 0.98782 0.99892 1.22494 0.96932 0.90111 0.91952 1.86335 1.54990 1.51196 1.39042 1.21808 0.89101 0.89374 0.94807 0.97018 1.20663 0.90131 0.91124 0.93903 1.42433 1.10453 1.47859 1.38822 1.20473 0.99260 1.17666 1.09635 0.91344 1.27419 0.92184 1.03295 1.06769 1.70943 1.25448 1.40791 1.24787 0.82542 0.75528 0.73744 0.72225 1.21076 1.19541 1.21504 1.22046 0.96676 0.97462 0.86781 1.22286 0.96608 0.98545 0.95737 1.22372 0.95837 0.96769 1.01595 1.22138 0.97653 0.95132 1.00647 1.22646 0.98162 0.92508 1.02276 0.90476 0.93740 0.91154 0.91215 0.88550 0.86660 0.88247 0.85554 0.90434 0.94038 0.88516 0.94866 0.95231 0.80898 0.94909 0.87740 0.90744 0.94022 0.88766 0.90101 0.94389 0.88859 0.91659 0.86668 0.89477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 11.01 113.37 1.25 1.78 16 2 O -0.42 -10.70 10.11 -148.98 -1.51 -12.21 16 3 C 0.06 1.02 4.37 71.98 0.31 1.34 16 4 C -0.08 -1.60 0.35 -51.85 -0.02 -1.61 16 5 C 0.52 15.18 6.05 87.66 0.53 15.71 16 6 O -0.58 -23.19 14.78 -3.05 -0.05 -23.23 16 7 N -0.61 -15.27 2.18 -817.95 -1.79 -17.05 16 8 C 0.09 1.24 3.81 86.38 0.33 1.56 16 9 C -0.16 -2.51 5.79 30.31 0.18 -2.33 16 10 C 0.06 1.56 6.37 71.50 0.46 2.02 16 11 O -0.40 -14.75 9.38 -117.86 -1.11 -15.86 16 12 C 0.11 4.33 2.68 31.21 0.08 4.42 16 13 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 14 C 0.17 7.95 5.92 86.38 0.51 8.46 16 15 N -0.75 -43.39 5.54 -343.46 -1.90 -45.29 16 16 C -0.34 -20.95 9.99 84.03 0.84 -20.11 16 17 H 0.07 4.08 7.83 -2.91 -0.02 4.06 16 18 C -0.11 -6.60 5.50 84.86 0.47 -6.13 16 19 N -0.97 -64.91 13.70 21.65 0.30 -64.61 16 20 Si 1.14 54.99 29.92 68.60 2.05 57.04 16 21 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 22 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 23 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 24 C 0.10 2.96 4.91 87.26 0.43 3.39 16 25 C -0.09 -2.03 5.18 31.89 0.17 -1.87 16 26 C -0.13 -2.38 6.54 31.67 0.21 -2.17 16 27 C -0.12 -1.39 6.80 31.32 0.21 -1.18 16 28 C -0.12 -1.26 4.63 31.32 0.14 -1.11 16 29 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.07 1.01 4.20 -2.39 -0.01 1.00 16 33 H 0.10 0.95 8.01 -2.39 -0.02 0.93 16 34 H 0.12 1.15 3.04 -2.39 -0.01 1.14 16 35 H 0.10 0.95 7.45 -2.39 -0.02 0.93 16 36 H 0.13 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.08 1.39 8.01 -2.39 -0.02 1.38 16 38 H 0.04 1.13 6.16 -2.39 -0.01 1.11 16 39 H 0.10 2.26 8.14 -2.38 -0.02 2.24 16 40 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.36 21.80 6.49 -92.71 -0.60 21.20 16 43 H 0.24 16.29 6.77 -92.71 -0.63 15.66 16 44 H 0.10 2.76 8.11 -2.39 -0.02 2.74 16 45 H 0.07 2.62 7.21 -2.38 -0.02 2.60 16 46 H 0.04 1.27 7.32 -2.39 -0.02 1.25 16 47 H 0.09 1.57 8.06 -2.39 -0.02 1.55 16 48 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 49 H 0.04 0.94 7.92 -2.39 -0.02 0.92 16 50 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 51 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 52 H 0.12 0.44 7.75 -2.39 -0.02 0.42 16 53 H 0.09 0.84 4.94 -2.38 -0.01 0.83 16 Total: -1.00 -88.09 395.64 2.54 -85.54 By element: Atomic # 1 Polarization: 33.06 SS G_CDS: 0.44 Total: 33.51 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: 6.09 Total: 2.16 kcal Atomic # 7 Polarization: -123.56 SS G_CDS: -3.39 Total: -126.95 kcal Atomic # 8 Polarization: -48.64 SS G_CDS: -2.66 Total: -51.30 kcal Atomic # 14 Polarization: 54.99 SS G_CDS: 2.05 Total: 57.04 kcal Total: -88.09 2.54 -85.54 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200653145.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.954 kcal (2) G-P(sol) polarization free energy of solvation -88.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds