Wall clock time and date at job start Sat Apr 11 2020 06:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 114.00121 * 2 1 4 4 C 1.52996 * 109.47161 * 209.99855 * 3 2 1 5 5 C 1.53001 * 109.47041 * 180.02562 * 4 3 2 6 6 C 1.52995 * 109.47279 * 59.99997 * 5 4 3 7 7 C 1.50701 * 109.47283 * 179.97438 * 6 5 4 8 8 O 1.21278 * 119.99868 * 24.30876 * 7 6 5 9 9 N 1.34772 * 120.00070 * 204.30435 * 7 6 5 10 10 C 1.47511 * 118.75989 * 4.83691 * 9 7 6 11 11 C 1.53572 * 111.02892 * 221.60673 * 10 9 7 12 12 C 1.51540 * 109.58361 * 39.97400 * 11 10 9 13 13 O 1.42151 * 108.75876 * 268.59987 * 12 11 10 14 14 C 1.38017 * 119.43751 * 87.22444 * 13 12 11 15 15 H 1.09008 * 109.46205 * 56.57759 * 14 13 12 16 16 C 1.53002 * 109.47030 * 176.56667 * 14 13 12 17 17 N 1.46496 * 109.47413 * 300.00759 * 16 14 13 18 18 C 1.36930 * 120.00067 * 179.97438 * 17 16 14 19 19 H 1.08002 * 120.00113 * 0.02562 * 18 17 16 20 20 C 1.38815 * 119.99969 * 179.97438 * 18 17 16 21 21 N 1.31621 * 120.00358 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00064 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47219 * 89.99579 * 22 20 18 24 24 H 1.48498 * 109.47148 * 210.00342 * 22 20 18 25 25 H 1.48507 * 109.47052 * 329.99879 * 22 20 18 26 26 C 1.45130 * 118.75822 * 184.56971 * 9 7 6 27 27 C 1.52995 * 109.47451 * 300.00055 * 6 5 4 28 28 C 1.53001 * 109.46924 * 59.99728 * 27 6 5 29 29 H 1.09002 * 109.47224 * 299.99723 * 1 2 3 30 30 H 1.09001 * 109.47095 * 59.99778 * 1 2 3 31 31 H 1.09000 * 109.47507 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47055 * 330.00059 * 3 2 1 33 33 H 1.09001 * 109.47197 * 60.00046 * 4 3 2 34 34 H 1.08998 * 109.47303 * 300.00052 * 4 3 2 35 35 H 1.09008 * 109.47068 * 180.02562 * 5 4 3 36 36 H 1.08998 * 109.46919 * 300.00048 * 5 4 3 37 37 H 1.08998 * 109.47104 * 60.00164 * 6 5 4 38 38 H 1.09000 * 109.16641 * 342.00055 * 10 9 7 39 39 H 1.08995 * 109.16761 * 101.20570 * 10 9 7 40 40 H 1.08995 * 109.45509 * 160.01077 * 11 10 9 41 41 H 1.09008 * 109.45364 * 279.96515 * 11 10 9 42 42 H 1.08997 * 109.58871 * 28.38590 * 12 11 10 43 43 H 1.09004 * 109.58688 * 148.82024 * 12 11 10 44 44 H 1.09002 * 109.46723 * 60.00723 * 16 14 13 45 45 H 1.08996 * 109.47300 * 180.02562 * 16 14 13 46 46 H 0.97002 * 120.00057 * 359.97438 * 17 16 14 47 47 H 0.96999 * 120.00088 * 180.02562 * 21 20 18 48 48 H 1.08998 * 109.46174 * 210.76101 * 26 9 7 49 49 H 1.09004 * 109.45606 * 330.71499 * 26 9 7 50 50 H 1.09001 * 109.47561 * 180.02562 * 27 6 5 51 51 H 1.08998 * 109.47056 * 300.00139 * 27 6 5 52 52 H 1.09001 * 109.47321 * 60.00655 * 28 27 6 53 53 H 1.09008 * 109.47068 * 180.02562 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.3589 1.2632 -0.7212 5 6 3.9815 2.6608 -0.7206 6 6 4.1890 3.1261 0.7220 7 6 4.8028 4.5024 0.7226 8 8 4.6551 5.2327 -0.2344 9 7 5.5158 4.9219 1.7866 10 6 5.7696 3.9749 2.8888 11 6 5.6074 4.6610 4.2531 12 6 4.4191 5.6005 4.2110 13 8 4.8705 6.8914 3.8229 14 6 4.9577 7.2046 2.4816 15 1 3.9861 7.0562 2.0101 16 6 5.3822 8.6663 2.3257 17 7 4.3907 9.5338 2.9664 18 6 4.5603 10.8925 2.9548 19 1 5.4249 11.3246 2.4729 20 6 3.6205 11.7145 3.5614 21 7 2.5661 11.1880 4.1474 22 14 3.8516 13.5681 3.5450 23 1 3.2034 14.1370 2.3361 24 1 3.2332 14.1548 4.7609 25 1 5.3021 13.8860 3.5249 26 6 6.0100 6.2864 1.8020 27 6 2.8404 3.1684 1.4433 28 6 2.2178 1.7708 1.4427 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.3450 1.9993 -0.5138 33 1 3.2111 0.9313 -1.7489 34 1 4.0241 0.5693 -0.2074 35 1 4.9422 2.6308 -1.2349 36 1 3.3164 3.3550 -1.2342 37 1 4.8541 2.4319 1.2356 38 1 5.0644 3.1468 2.8186 39 1 6.7848 3.5878 2.8013 40 1 5.4460 3.9058 5.0223 41 1 6.5095 5.2275 4.4842 42 1 3.6900 5.2355 3.4877 43 1 3.9613 5.6552 5.1988 44 1 6.3536 8.8147 2.7973 45 1 5.4506 8.9138 1.2665 46 1 3.6140 9.1457 3.3989 47 1 1.9092 11.7625 4.5710 48 1 6.9446 6.3278 2.3613 49 1 6.1839 6.6211 0.7793 50 1 2.9881 3.5003 2.4710 51 1 2.1753 3.8626 0.9297 52 1 2.8828 1.0765 1.9563 53 1 1.2567 1.8009 1.9562 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201268284.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:18 Heat of formation + Delta-G solvation = -119.542190 kcal Electronic energy + Delta-G solvation = -31616.150270 eV Core-core repulsion = 27488.004273 eV Total energy + Delta-G solvation = -4128.145997 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.98214 -39.41481 -38.40388 -36.43058 -35.66697 -34.55948 -32.84576 -31.27478 -30.92592 -30.77487 -28.68773 -27.01679 -26.58199 -25.16896 -23.46191 -23.11162 -22.26881 -21.64886 -20.90362 -20.46814 -18.91739 -17.56244 -17.09718 -16.99068 -16.65175 -16.37580 -15.92249 -15.68708 -15.48386 -15.07730 -14.73475 -14.34006 -14.22498 -14.06661 -13.80842 -13.56965 -13.41288 -13.09396 -13.06683 -12.75055 -12.65593 -12.49728 -12.27299 -12.24628 -11.98378 -11.75491 -11.56865 -11.50508 -11.33342 -11.24176 -10.96941 -10.88015 -10.80380 -10.75146 -10.67475 -10.24613 -10.00339 -9.80468 -9.70417 -9.60496 -9.37681 -8.80733 -8.53293 -6.82202 -5.67376 -2.95297 2.50963 2.85727 3.35986 3.49268 3.53744 3.55781 3.97280 4.20803 4.27537 4.34282 4.58481 4.64745 4.69043 4.70642 4.76752 4.84097 4.91377 4.97798 5.00491 5.03344 5.05859 5.13612 5.23989 5.26564 5.29861 5.32868 5.39132 5.45707 5.47257 5.52058 5.60603 5.62751 5.66007 5.67899 5.78338 5.79591 5.86196 5.91680 5.98778 6.01753 6.05297 6.11565 6.36053 6.52258 6.68668 6.81003 6.85376 7.22423 7.76658 8.02382 8.10640 8.51064 9.62560 10.21197 10.57377 11.55611 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.015562 B = 0.002488 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.831678 B =11252.222057 C =11729.792519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.387 6.387 3 C 0.086 3.914 4 C -0.113 4.113 5 C -0.099 4.099 6 C -0.109 4.109 7 C 0.512 3.488 8 O -0.531 6.531 9 N -0.609 5.609 10 C 0.102 3.898 11 C -0.167 4.167 12 C 0.073 3.927 13 O -0.366 6.366 14 C 0.090 3.910 15 H 0.050 0.950 16 C 0.166 3.834 17 N -0.725 5.725 18 C -0.236 4.236 19 H 0.070 0.930 20 C -0.016 4.016 21 N -0.933 5.933 22 Si 0.907 3.093 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.282 1.282 26 C 0.079 3.921 27 C -0.109 4.109 28 C -0.136 4.136 29 H 0.041 0.959 30 H 0.041 0.959 31 H 0.084 0.916 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.094 0.906 38 H 0.085 0.915 39 H 0.067 0.933 40 H 0.084 0.916 41 H 0.082 0.918 42 H 0.047 0.953 43 H 0.089 0.911 44 H 0.026 0.974 45 H 0.034 0.966 46 H 0.387 0.613 47 H 0.254 0.746 48 H 0.082 0.918 49 H 0.094 0.906 50 H 0.073 0.927 51 H 0.073 0.927 52 H 0.073 0.927 53 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.937 -27.166 -4.943 27.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.306 6.306 3 C 0.029 3.971 4 C -0.151 4.151 5 C -0.137 4.137 6 C -0.130 4.130 7 C 0.299 3.701 8 O -0.407 6.407 9 N -0.343 5.343 10 C -0.020 4.020 11 C -0.205 4.205 12 C -0.004 4.004 13 O -0.284 6.284 14 C 0.030 3.970 15 H 0.067 0.933 16 C 0.037 3.963 17 N -0.369 5.369 18 C -0.367 4.367 19 H 0.088 0.912 20 C -0.211 4.211 21 N -0.582 5.582 22 Si 0.738 3.262 23 H -0.218 1.218 24 H -0.218 1.218 25 H -0.208 1.208 26 C -0.044 4.044 27 C -0.147 4.147 28 C -0.174 4.174 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.103 0.897 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.096 0.904 37 H 0.112 0.888 38 H 0.104 0.896 39 H 0.085 0.915 40 H 0.103 0.897 41 H 0.101 0.899 42 H 0.065 0.935 43 H 0.107 0.893 44 H 0.044 0.956 45 H 0.052 0.948 46 H 0.221 0.779 47 H 0.064 0.936 48 H 0.100 0.900 49 H 0.112 0.888 50 H 0.092 0.908 51 H 0.092 0.908 52 H 0.092 0.908 53 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.114 -26.641 -5.340 27.253 hybrid contribution -0.402 0.837 0.148 0.941 sum 1.712 -25.803 -5.193 26.376 Atomic orbital electron populations 1.22789 0.81134 1.02636 1.00095 1.87893 1.19609 1.27992 1.95097 1.22211 0.95112 0.84352 0.95465 1.21584 0.95196 0.97283 1.01047 1.21355 1.02086 0.95777 0.94479 1.21431 0.98096 0.94424 0.99088 1.20719 0.78191 0.88991 0.82179 1.90717 1.59027 1.56948 1.33976 1.47951 1.54138 1.12813 1.19351 1.22064 1.01680 0.91742 0.86543 1.22517 1.01712 1.00158 0.96157 1.22136 0.94451 0.83475 1.00314 1.86444 1.85943 1.31608 1.24438 1.22354 0.97046 0.95509 0.82078 0.93262 1.20618 0.93787 0.85524 0.96327 1.42207 1.25399 1.02638 1.66705 1.19237 1.05437 0.82678 1.29373 0.91200 1.24735 0.97331 0.97913 1.01148 1.69679 1.12620 1.33849 1.42021 0.86182 0.77304 0.85719 0.76951 1.21800 1.21834 1.20791 1.22533 0.98053 0.80520 1.03322 1.21488 0.94805 0.97491 1.00883 1.22000 1.01659 0.96378 0.97343 0.93994 0.94005 0.89729 0.91890 0.90887 0.91007 0.90890 0.90383 0.88812 0.89646 0.91510 0.89722 0.89918 0.93519 0.89312 0.95590 0.94821 0.77893 0.93646 0.89951 0.88796 0.90829 0.90806 0.90805 0.91292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.82 101.05 1.09 1.29 16 2 O -0.39 -3.48 10.35 -35.23 -0.36 -3.85 16 3 C 0.09 0.70 2.61 -26.73 -0.07 0.63 16 4 C -0.11 -0.88 5.57 -26.73 -0.15 -1.03 16 5 C -0.10 -0.90 4.73 -26.73 -0.13 -1.02 16 6 C -0.11 -1.00 1.65 -91.78 -0.15 -1.15 16 7 C 0.51 6.63 6.74 -10.99 -0.07 6.55 16 8 O -0.53 -9.05 15.49 5.56 0.09 -8.96 16 9 N -0.61 -7.35 2.18 -172.14 -0.38 -7.73 16 10 C 0.10 0.87 5.81 -3.19 -0.02 0.86 16 11 C -0.17 -1.57 5.79 -27.17 -0.16 -1.72 16 12 C 0.07 0.94 6.37 36.42 0.23 1.18 16 13 O -0.37 -6.53 9.18 -26.54 -0.24 -6.78 16 14 C 0.09 1.63 2.74 -25.50 -0.07 1.56 16 15 H 0.05 0.99 8.14 -51.92 -0.42 0.56 16 16 C 0.17 3.58 5.95 -4.04 -0.02 3.55 16 17 N -0.73 -19.60 5.49 -59.91 -0.33 -19.92 16 18 C -0.24 -6.90 9.99 -15.06 -0.15 -7.06 16 19 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 20 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 21 N -0.93 -29.24 13.06 55.49 0.72 -28.52 16 22 Si 0.91 23.10 29.55 -169.99 -5.02 18.08 16 23 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 24 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 25 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 26 C 0.08 1.15 4.95 -3.55 -0.02 1.13 16 27 C -0.11 -0.94 4.97 -26.73 -0.13 -1.08 16 28 C -0.14 -1.02 5.54 -26.73 -0.15 -1.16 16 29 H 0.04 0.25 7.87 -51.93 -0.41 -0.16 16 30 H 0.04 0.25 8.08 -51.93 -0.42 -0.17 16 31 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.52 7.79 -51.93 -0.40 0.11 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 36 H 0.08 0.83 7.87 -51.93 -0.41 0.42 16 37 H 0.09 0.67 6.41 -51.93 -0.33 0.34 16 38 H 0.09 0.57 4.81 -51.93 -0.25 0.32 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.08 0.87 8.01 -51.92 -0.42 0.46 16 42 H 0.05 0.59 6.38 -51.93 -0.33 0.26 16 43 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.39 11.12 7.53 -40.82 -0.31 10.81 16 47 H 0.25 7.65 8.31 -40.82 -0.34 7.31 16 48 H 0.08 1.08 8.11 -51.93 -0.42 0.66 16 49 H 0.09 1.46 7.22 -51.93 -0.37 1.08 16 50 H 0.07 0.62 6.42 -51.93 -0.33 0.28 16 51 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 52 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 53 H 0.07 0.50 7.87 -51.92 -0.41 0.09 16 LS Contribution 404.57 15.07 6.10 6.10 Total: -1.00 -35.09 404.57 -8.92 -44.01 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -9.44 Total: 5.61 kcal Atomic # 6 Polarization: 2.02 SS G_CDS: -0.06 Total: 1.96 kcal Atomic # 7 Polarization: -56.19 SS G_CDS: 0.02 Total: -56.17 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: -0.52 Total: -19.59 kcal Atomic # 14 Polarization: 23.10 SS G_CDS: -5.02 Total: 18.08 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -35.09 -8.92 -44.01 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201268284.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.532 kcal (2) G-P(sol) polarization free energy of solvation -35.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds