Wall clock time and date at job start Sat Apr 11 2020 06:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00186 * 2 1 4 4 C 1.53001 * 109.47145 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.46886 * 179.97438 * 4 3 2 6 6 O 1.42903 * 109.46726 * 180.02562 * 5 4 3 7 7 C 1.42899 * 113.99629 * 180.02562 * 6 5 4 8 8 C 1.53009 * 109.47113 * 180.02562 * 7 6 5 9 9 C 1.50697 * 109.47158 * 180.02562 * 8 7 6 10 10 O 1.21287 * 120.00127 * 359.97438 * 9 8 7 11 11 N 1.34779 * 119.99954 * 179.97438 * 9 8 7 12 12 C 1.46493 * 119.99963 * 179.97438 * 11 9 8 13 13 H 1.09002 * 112.88698 * 25.33209 * 12 11 9 14 14 C 1.53951 * 113.66529 * 253.98725 * 12 11 9 15 15 C 1.53945 * 87.29621 * 270.26415 * 14 12 11 16 16 H 1.08999 * 113.66310 * 89.73016 * 15 14 12 17 17 N 1.46500 * 113.66427 * 220.69932 * 15 14 12 18 18 C 1.36934 * 119.99949 * 255.49432 * 17 15 14 19 19 H 1.08003 * 120.00129 * 359.97438 * 18 17 15 20 20 C 1.38818 * 119.99999 * 180.02562 * 18 17 15 21 21 N 1.31620 * 119.99637 * 0.02562 * 20 18 17 22 22 Si 1.86792 * 120.00138 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47027 * 0.02562 * 22 20 18 24 24 H 1.48508 * 109.47177 * 119.99806 * 22 20 18 25 25 H 1.48501 * 109.47205 * 239.99934 * 22 20 18 26 26 C 1.52910 * 113.66545 * 156.67846 * 12 11 9 27 27 C 1.52911 * 121.13712 * 323.85395 * 26 12 11 28 28 C 1.53953 * 86.78373 * 209.37403 * 27 26 12 29 29 C 1.52903 * 121.14154 * 215.29141 * 26 12 11 30 30 H 1.08998 * 109.46946 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46918 * 299.99649 * 1 2 3 32 32 H 1.09000 * 109.47330 * 59.99777 * 1 2 3 33 33 H 1.09001 * 109.46621 * 60.00032 * 3 2 1 34 34 H 1.09002 * 109.47259 * 300.00293 * 3 2 1 35 35 H 1.09001 * 109.46652 * 60.00333 * 4 3 2 36 36 H 1.08992 * 109.47514 * 300.00423 * 4 3 2 37 37 H 1.09002 * 109.47398 * 300.00496 * 5 4 3 38 38 H 1.09001 * 109.47194 * 60.00677 * 5 4 3 39 39 H 1.09007 * 109.47484 * 299.99646 * 7 6 5 40 40 H 1.09004 * 109.47459 * 59.99983 * 7 6 5 41 41 H 1.08997 * 109.46502 * 300.00085 * 8 7 6 42 42 H 1.08998 * 109.46733 * 60.00191 * 8 7 6 43 43 H 0.96995 * 119.99730 * 0.02562 * 11 9 8 44 44 H 1.09001 * 113.57940 * 24.87007 * 14 12 11 45 45 H 1.09005 * 113.58354 * 155.58342 * 14 12 11 46 46 H 0.97000 * 119.99800 * 75.49957 * 17 15 14 47 47 H 0.97004 * 119.99609 * 180.02562 * 21 20 18 48 48 H 1.08994 * 113.66332 * 323.84782 * 27 26 12 49 49 H 1.09003 * 113.66203 * 94.90020 * 27 26 12 50 50 H 1.09000 * 113.58007 * 270.13184 * 28 27 26 51 51 H 1.08989 * 113.57778 * 139.33994 * 28 27 26 52 52 H 1.09004 * 113.66092 * 265.09267 * 29 26 12 53 53 H 1.08995 * 113.66648 * 36.15292 * 29 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1578 2.5823 0.0000 6 8 5.5824 2.4694 0.0000 7 6 6.2648 3.7249 0.0000 8 6 7.7758 3.4840 -0.0006 9 6 8.4956 4.8080 0.0000 10 8 7.8624 5.8425 0.0004 11 7 9.8429 4.8426 0.0001 12 6 10.5426 6.1296 0.0002 13 1 9.9476 6.9356 0.4298 14 6 11.1796 6.4868 -1.3551 15 6 12.4456 5.7579 -0.8696 16 1 12.4599 4.6958 -1.1141 17 7 13.6911 6.4416 -1.2269 18 6 14.4690 5.9593 -2.2454 19 1 14.1646 5.0747 -2.7851 20 6 15.6495 6.6067 -2.5836 21 7 16.0212 7.6839 -1.9249 22 14 16.7110 5.9485 -3.9725 23 1 16.0765 4.7355 -4.5482 24 1 16.8442 6.9850 -5.0277 25 1 18.0557 5.6021 -3.4463 26 6 11.9656 6.0547 0.5547 27 6 12.3128 5.1253 1.7183 28 6 13.4045 6.1442 2.0928 29 6 12.5598 7.2064 1.3660 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.6886 1.8463 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 3.8574 0.6435 -0.8892 36 1 3.8568 0.6438 0.8907 37 1 3.8364 3.1227 -0.8904 38 1 3.8359 3.1237 0.8896 39 1 5.9870 4.2895 -0.8900 40 1 5.9869 4.2896 0.8900 41 1 8.0540 2.9192 0.8891 42 1 8.0533 2.9196 -0.8909 43 1 10.3493 4.0153 -0.0006 44 1 10.6969 6.0035 -2.2046 45 1 11.3207 7.5576 -1.5020 46 1 13.9648 7.2358 -0.7419 47 1 16.8459 8.1365 -2.1614 48 1 11.5203 5.0403 2.4617 49 1 12.7059 4.1586 1.4038 50 1 14.3649 5.9494 1.6155 51 1 13.4915 6.3154 3.1656 52 1 13.1504 7.9023 0.7701 53 1 11.8368 7.7063 2.0105 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001203596282.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:45 Heat of formation + Delta-G solvation = -105.405491 kcal Electronic energy + Delta-G solvation = -29134.382843 eV Core-core repulsion = 25006.849859 eV Total energy + Delta-G solvation = -4127.532984 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.91665 -40.30706 -39.25898 -38.56868 -36.36412 -35.75841 -34.23583 -33.77911 -32.27953 -31.36595 -27.96862 -26.75973 -26.60898 -25.83240 -25.49691 -24.75061 -23.48868 -22.62031 -21.77989 -21.11756 -19.60304 -18.83130 -18.37941 -17.67170 -17.54416 -17.18446 -16.95336 -16.89466 -16.61884 -16.35474 -16.02036 -15.82160 -15.56793 -15.42635 -15.09272 -14.81486 -14.67844 -14.13131 -13.94045 -13.61003 -13.37540 -13.29637 -13.15817 -12.87998 -12.85899 -12.78494 -12.63986 -12.57718 -12.46848 -12.24976 -12.10322 -11.91771 -11.91084 -11.90914 -11.85403 -11.30408 -11.20767 -10.88655 -10.87301 -10.68111 -10.64685 -10.60370 -9.90452 -8.94562 -7.93233 -5.20397 1.47567 1.48358 1.57711 1.61544 1.91147 2.51615 2.57095 3.17693 3.38270 3.49407 3.69253 3.75130 3.79640 3.92276 3.93589 4.02624 4.08525 4.10108 4.12223 4.14750 4.27909 4.31729 4.40374 4.45478 4.52134 4.54442 4.55640 4.59345 4.62631 4.67642 4.75401 4.82004 4.86142 4.86365 4.88342 4.91379 5.03911 5.09378 5.10311 5.13600 5.14465 5.20445 5.28852 5.50785 5.60228 5.64643 5.69973 6.13936 6.22969 6.29191 6.58566 7.25611 7.36316 8.13802 8.36694 9.30176 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.018583 B = 0.001612 C = 0.001533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.356591 B =17363.554912 C =18264.914129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.419 6.419 3 C 0.063 3.937 4 C -0.114 4.114 5 C 0.064 3.936 6 O -0.401 6.401 7 C 0.081 3.919 8 C -0.131 4.131 9 C 0.520 3.480 10 O -0.586 6.586 11 N -0.692 5.692 12 C 0.150 3.850 13 H 0.087 0.913 14 C -0.173 4.173 15 C 0.178 3.822 16 H 0.081 0.919 17 N -0.721 5.721 18 C -0.239 4.239 19 H 0.077 0.923 20 C -0.073 4.073 21 N -0.968 5.968 22 Si 0.968 3.032 23 H -0.266 1.266 24 H -0.298 1.298 25 H -0.295 1.295 26 C -0.112 4.112 27 C -0.108 4.108 28 C -0.132 4.132 29 C -0.114 4.114 30 H 0.095 0.905 31 H 0.052 0.948 32 H 0.050 0.950 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.059 0.941 38 H 0.062 0.938 39 H 0.049 0.951 40 H 0.054 0.946 41 H 0.125 0.875 42 H 0.119 0.881 43 H 0.415 0.585 44 H 0.057 0.943 45 H 0.065 0.935 46 H 0.377 0.623 47 H 0.249 0.751 48 H 0.099 0.901 49 H 0.071 0.929 50 H 0.056 0.944 51 H 0.080 0.920 52 H 0.046 0.954 53 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.912 -13.354 8.855 31.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.339 6.339 3 C -0.013 4.013 4 C -0.152 4.152 5 C -0.012 4.012 6 O -0.321 6.321 7 C 0.004 3.996 8 C -0.170 4.170 9 C 0.308 3.692 10 O -0.467 6.467 11 N -0.343 5.343 12 C 0.043 3.957 13 H 0.105 0.895 14 C -0.215 4.215 15 C 0.068 3.932 16 H 0.099 0.901 17 N -0.359 5.359 18 C -0.371 4.371 19 H 0.095 0.905 20 C -0.265 4.265 21 N -0.619 5.619 22 Si 0.798 3.202 23 H -0.190 1.190 24 H -0.225 1.225 25 H -0.222 1.222 26 C -0.114 4.114 27 C -0.145 4.145 28 C -0.170 4.170 29 C -0.152 4.152 30 H 0.113 0.887 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.068 0.932 40 H 0.073 0.927 41 H 0.144 0.856 42 H 0.137 0.863 43 H 0.252 0.748 44 H 0.076 0.924 45 H 0.083 0.917 46 H 0.211 0.789 47 H 0.058 0.942 48 H 0.118 0.882 49 H 0.090 0.910 50 H 0.075 0.925 51 H 0.099 0.901 52 H 0.065 0.935 53 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -27.070 -13.103 8.703 31.308 hybrid contribution 1.021 0.706 -0.946 1.561 sum -26.049 -12.397 7.756 29.873 Atomic orbital electron populations 1.22934 0.79271 1.03867 1.00997 1.87825 1.21649 1.28783 1.95660 1.22420 0.92752 0.84594 1.01553 1.21309 0.93401 0.96473 1.03989 1.22401 0.80138 0.97150 1.01512 1.87758 1.18993 1.29630 1.95670 1.22054 0.91297 0.84967 1.01244 1.21433 0.93663 0.94230 1.07684 1.20879 0.82259 0.91504 0.74559 1.90698 1.67170 1.37070 1.51725 1.45479 1.05895 1.09029 1.73852 1.21349 0.91538 0.86501 0.96298 0.89466 1.24123 0.99458 1.00870 0.97098 1.21640 0.84495 0.95384 0.91708 0.90067 1.42556 1.22315 1.31977 1.39092 1.19718 1.00902 1.07872 1.08649 0.90527 1.25481 1.00051 0.98550 1.02467 1.69818 1.25045 1.22167 1.44884 0.85152 0.78589 0.77579 0.78920 1.18986 1.22546 1.22210 1.23355 0.93636 0.99514 0.94901 1.22611 0.98247 0.97105 0.96527 1.22669 0.97386 0.96746 1.00174 1.22520 0.98954 0.95881 0.97839 0.88662 0.92986 0.93087 0.91862 0.92021 0.91050 0.90838 0.92256 0.91968 0.93244 0.92730 0.85646 0.86299 0.74797 0.92434 0.91672 0.78926 0.94175 0.88227 0.91013 0.92502 0.90136 0.93481 0.88457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 113.37 1.25 1.47 16 2 O -0.42 -6.41 10.70 -148.98 -1.59 -8.01 16 3 C 0.06 0.72 5.94 71.98 0.43 1.15 16 4 C -0.11 -1.53 5.95 30.59 0.18 -1.35 16 5 C 0.06 0.88 5.94 71.98 0.43 1.31 16 6 O -0.40 -7.21 10.34 -148.98 -1.54 -8.75 16 7 C 0.08 1.47 5.23 71.99 0.38 1.85 16 8 C -0.13 -2.07 6.07 29.85 0.18 -1.89 16 9 C 0.52 12.06 7.83 87.66 0.69 12.74 16 10 O -0.59 -18.53 15.60 -3.05 -0.05 -18.58 16 11 N -0.69 -15.37 5.06 -441.16 -2.23 -17.60 16 12 C 0.15 4.27 4.09 45.28 0.19 4.45 16 13 H 0.09 2.71 7.50 -2.39 -0.02 2.69 16 14 C -0.17 -6.06 7.68 31.23 0.24 -5.82 16 15 C 0.18 6.58 4.28 45.38 0.19 6.77 16 16 H 0.08 2.88 8.12 -2.39 -0.02 2.86 16 17 N -0.72 -34.93 5.36 -321.09 -1.72 -36.65 16 18 C -0.24 -12.93 9.98 84.04 0.84 -12.09 16 19 H 0.08 3.96 7.83 -2.91 -0.02 3.94 16 20 C -0.07 -4.14 5.50 84.86 0.47 -3.67 16 21 N -0.97 -58.60 13.06 21.65 0.28 -58.32 16 22 Si 0.97 45.70 29.55 68.60 2.03 47.73 16 23 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 24 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 25 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 26 C -0.11 -3.32 0.92 -52.21 -0.05 -3.36 16 27 C -0.11 -2.62 7.46 30.89 0.23 -2.39 16 28 C -0.13 -3.82 8.08 31.23 0.25 -3.57 16 29 C -0.11 -3.52 7.46 30.88 0.23 -3.29 16 30 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.05 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 33 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.05 0.98 8.10 -2.38 -0.02 0.96 16 40 H 0.05 1.02 8.10 -2.38 -0.02 1.00 16 41 H 0.13 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.42 7.15 8.58 -92.71 -0.80 6.36 16 44 H 0.06 1.98 8.14 -2.39 -0.02 1.97 16 45 H 0.06 2.54 8.14 -2.38 -0.02 2.52 16 46 H 0.38 19.74 5.88 -92.71 -0.55 19.19 16 47 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 48 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 49 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 50 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 51 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 52 H 0.05 1.77 6.44 -2.39 -0.02 1.75 16 53 H 0.10 2.55 8.14 -2.39 -0.02 2.53 16 Total: -1.00 -70.39 429.84 0.84 -69.55 By element: Atomic # 1 Polarization: 38.77 SS G_CDS: -0.45 Total: 38.31 kcal Atomic # 6 Polarization: -13.80 SS G_CDS: 6.12 Total: -7.68 kcal Atomic # 7 Polarization: -108.90 SS G_CDS: -3.67 Total: -112.57 kcal Atomic # 8 Polarization: -32.15 SS G_CDS: -3.18 Total: -35.34 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -70.39 0.84 -69.55 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203596282.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.859 kcal (2) G-P(sol) polarization free energy of solvation -70.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds