Wall clock time and date at job start Sat Apr 11 2020 06:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 113.99767 * 2 1 4 4 C 1.52997 * 109.46621 * 180.02562 * 3 2 1 5 5 C 1.50701 * 109.54741 * 304.49529 * 4 3 2 6 6 O 1.21273 * 120.00054 * 112.67824 * 5 4 3 7 7 N 1.34779 * 119.99833 * 292.41130 * 5 4 3 8 8 C 1.46922 * 120.63100 * 5.13211 * 7 5 4 9 9 C 1.53624 * 108.54436 * 126.37196 * 8 7 5 10 10 C 1.53043 * 109.24230 * 54.85251 * 9 8 7 11 11 C 1.53002 * 109.46007 * 178.49166 * 10 9 8 12 12 N 1.46504 * 109.47055 * 295.06583 * 11 10 9 13 13 C 1.36935 * 119.99550 * 179.97438 * 12 11 10 14 14 H 1.07994 * 120.00719 * 0.02562 * 13 12 11 15 15 C 1.38816 * 119.99518 * 180.02562 * 13 12 11 16 16 N 1.31615 * 120.00303 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99953 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47035 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.46856 * 120.00038 * 17 15 13 20 20 H 1.48500 * 109.47334 * 240.00519 * 17 15 13 21 21 C 1.53032 * 109.53867 * 298.51496 * 10 9 8 22 22 C 1.46930 * 120.62871 * 185.41361 * 7 5 4 23 23 C 1.53173 * 109.54906 * 64.67614 * 4 3 2 24 24 C 1.53276 * 109.07075 * 176.85007 * 23 4 3 25 25 O 1.42902 * 109.45824 * 302.44920 * 24 23 4 26 26 C 1.42902 * 114.10307 * 61.15628 * 25 24 23 27 27 C 1.53091 * 109.40970 * 298.84071 * 26 25 24 28 28 H 1.09004 * 109.47114 * 300.00095 * 1 2 3 29 29 H 1.09004 * 109.47714 * 59.99609 * 1 2 3 30 30 H 1.09001 * 109.47313 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47132 * 60.00367 * 3 2 1 32 32 H 1.09000 * 109.47368 * 299.99833 * 3 2 1 33 33 H 1.08999 * 109.58422 * 246.20266 * 8 7 5 34 34 H 1.08997 * 109.58997 * 6.62975 * 8 7 5 35 35 H 1.09002 * 109.63200 * 294.86442 * 9 8 7 36 36 H 1.09000 * 109.43594 * 174.72231 * 9 8 7 37 37 H 1.09005 * 109.45681 * 58.53392 * 10 9 8 38 38 H 1.08991 * 109.47051 * 55.06992 * 11 10 9 39 39 H 1.09000 * 109.47109 * 175.07302 * 11 10 9 40 40 H 0.97001 * 120.00016 * 0.02562 * 12 11 10 41 41 H 0.97003 * 120.00370 * 179.97438 * 16 15 13 42 42 H 1.09002 * 109.49977 * 301.40724 * 21 10 9 43 43 H 1.09007 * 109.50031 * 181.31765 * 21 10 9 44 44 H 1.09000 * 109.58426 * 353.36900 * 22 7 5 45 45 H 1.08997 * 109.58327 * 113.79410 * 22 7 5 46 46 H 1.09006 * 109.51748 * 296.84402 * 23 4 3 47 47 H 1.09002 * 109.51925 * 57.02373 * 23 4 3 48 48 H 1.08998 * 109.46258 * 182.45056 * 24 23 4 49 49 H 1.09003 * 109.46442 * 62.44284 * 24 23 4 50 50 H 1.08994 * 109.48080 * 178.86228 * 26 25 24 51 51 H 1.08996 * 109.49231 * 58.82886 * 26 25 24 52 52 H 1.08998 * 109.52904 * 297.70184 * 27 26 25 53 53 H 1.09002 * 109.57620 * 177.54261 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 3.9749 0.3428 1.1695 6 8 4.4749 -0.7456 0.9796 7 7 3.8174 0.8019 2.4268 8 6 3.1182 2.0692 2.6789 9 6 1.9945 1.8137 3.6949 10 6 2.5856 1.1624 4.9473 11 6 1.4767 0.9399 5.9778 12 7 0.9557 2.2352 6.4218 13 6 -0.0507 2.2869 7.3490 14 1 -0.4601 1.3730 7.7532 15 6 -0.5447 3.5142 7.7693 16 7 -0.0463 4.6281 7.2763 17 14 -1.9171 3.5848 9.0346 18 1 -2.2988 2.2048 9.4284 19 1 -1.4490 4.3290 10.2314 20 1 -3.0940 4.2767 8.4504 21 6 3.2144 -0.1826 4.5766 22 6 4.3469 0.0475 3.5711 23 6 3.9970 0.5289 -1.3057 24 6 5.5289 0.4848 -1.3295 25 8 6.0455 1.8103 -1.1933 26 6 5.6838 2.4548 0.0298 27 6 4.1600 2.5791 0.1081 28 1 -0.3633 0.5139 0.8900 29 1 -0.3635 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.6886 1.8463 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8197 2.7997 3.0818 34 1 2.6926 2.4433 1.7478 35 1 1.2489 1.1500 3.2571 36 1 1.5264 2.7606 3.9637 37 1 3.3487 1.8156 5.3706 38 1 0.6719 0.3601 5.5260 39 1 1.8792 0.3977 6.8334 40 1 1.3231 3.0561 6.0584 41 1 -0.3917 5.4857 7.5697 42 1 2.4573 -0.8276 4.1306 43 1 3.6144 -0.6567 5.4730 44 1 4.7323 -0.9129 3.2287 45 1 5.1466 0.6164 4.0452 46 1 3.6003 -0.4847 -1.3641 47 1 3.6364 1.1115 -2.1534 48 1 5.8654 0.0589 -2.2747 49 1 5.8874 -0.1314 -0.5049 50 1 6.1317 3.4478 0.0636 51 1 6.0442 1.8645 0.8723 52 1 3.8027 3.2031 -0.7111 53 1 3.8788 3.0309 1.0594 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205430526.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:48 Heat of formation + Delta-G solvation = -125.222945 kcal Electronic energy + Delta-G solvation = -32624.660125 eV Core-core repulsion = 28496.267792 eV Total energy + Delta-G solvation = -4128.392333 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.43031 -39.86370 -38.74636 -38.62361 -36.65105 -35.57140 -34.35470 -32.56129 -31.96237 -31.72955 -29.26886 -28.34772 -27.00249 -25.85504 -25.09849 -24.31244 -24.00705 -23.42317 -22.26633 -21.16145 -19.83878 -19.08762 -17.97124 -17.63517 -17.30205 -17.14989 -16.78363 -16.73746 -16.59714 -16.24595 -15.69254 -15.60158 -15.47409 -15.42226 -15.21519 -14.94345 -14.73569 -14.37928 -14.11968 -13.95720 -13.65964 -13.43308 -13.28846 -13.09995 -13.02630 -12.91453 -12.85499 -12.73867 -12.43033 -12.22165 -12.18795 -12.11194 -11.96786 -11.74712 -11.67477 -11.52988 -11.36178 -11.30043 -10.94066 -10.83035 -10.43844 -10.35586 -9.64081 -8.97786 -7.94944 -5.22433 1.47431 1.48155 1.57698 1.58793 1.96151 2.55998 2.63623 2.92808 3.23600 3.38632 3.62074 3.64109 3.70183 3.75568 3.84339 3.90225 3.99504 4.06020 4.15933 4.26342 4.28480 4.32889 4.34925 4.39689 4.49189 4.51307 4.55321 4.56080 4.58532 4.62259 4.72246 4.75813 4.78782 4.82346 4.84490 4.86631 4.92446 4.99216 5.05147 5.06678 5.09658 5.12744 5.15603 5.28556 5.47381 5.53236 5.57717 6.11448 6.20357 6.28229 6.39665 7.14533 7.35355 8.10554 8.35984 9.28355 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.016803 B = 0.002823 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.995860 B = 9915.571256 C =10170.446023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.408 6.408 3 C 0.059 3.941 4 C -0.076 4.076 5 C 0.532 3.468 6 O -0.573 6.573 7 N -0.604 5.604 8 C 0.091 3.909 9 C -0.118 4.118 10 C -0.082 4.082 11 C 0.158 3.842 12 N -0.740 5.740 13 C -0.245 4.245 14 H 0.069 0.931 15 C -0.070 4.070 16 N -0.964 5.964 17 Si 0.968 3.032 18 H -0.270 1.270 19 H -0.293 1.293 20 H -0.292 1.292 21 C -0.115 4.115 22 C 0.115 3.885 23 C -0.119 4.119 24 C 0.054 3.946 25 O -0.394 6.394 26 C 0.058 3.942 27 C -0.161 4.161 28 H 0.040 0.960 29 H 0.061 0.939 30 H 0.089 0.911 31 H 0.070 0.930 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.117 0.883 35 H 0.053 0.947 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.011 0.989 39 H 0.016 0.984 40 H 0.377 0.623 41 H 0.252 0.748 42 H 0.054 0.946 43 H 0.085 0.915 44 H 0.080 0.920 45 H 0.083 0.917 46 H 0.070 0.930 47 H 0.093 0.907 48 H 0.106 0.894 49 H 0.045 0.955 50 H 0.121 0.879 51 H 0.034 0.966 52 H 0.108 0.892 53 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.930 -4.749 -19.130 21.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.327 6.327 3 C -0.017 4.017 4 C -0.079 4.079 5 C 0.322 3.678 6 O -0.452 6.452 7 N -0.336 5.336 8 C -0.031 4.031 9 C -0.156 4.156 10 C -0.101 4.101 11 C 0.032 3.968 12 N -0.383 5.383 13 C -0.377 4.377 14 H 0.087 0.913 15 C -0.263 4.263 16 N -0.615 5.615 17 Si 0.798 3.202 18 H -0.195 1.195 19 H -0.220 1.220 20 H -0.219 1.219 21 C -0.153 4.153 22 C -0.007 4.007 23 C -0.157 4.157 24 C -0.023 4.023 25 O -0.313 6.313 26 C -0.018 4.018 27 C -0.198 4.198 28 H 0.059 0.941 29 H 0.079 0.921 30 H 0.108 0.892 31 H 0.088 0.912 32 H 0.103 0.897 33 H 0.108 0.892 34 H 0.134 0.866 35 H 0.072 0.928 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.029 0.971 39 H 0.034 0.966 40 H 0.210 0.790 41 H 0.061 0.939 42 H 0.073 0.927 43 H 0.103 0.897 44 H 0.098 0.902 45 H 0.101 0.899 46 H 0.089 0.911 47 H 0.112 0.888 48 H 0.124 0.876 49 H 0.063 0.937 50 H 0.139 0.861 51 H 0.053 0.947 52 H 0.126 0.874 53 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 9.294 -5.504 -19.236 22.061 hybrid contribution -1.291 0.255 1.212 1.789 sum 8.003 -5.249 -18.024 20.408 Atomic orbital electron populations 1.22876 0.79508 1.03531 1.00897 1.87915 1.21233 1.27989 1.95588 1.22967 0.90403 0.85550 1.02828 1.20952 0.95699 0.97034 0.94228 1.20618 0.77083 0.85964 0.84173 1.90606 1.46534 1.22822 1.85282 1.48112 1.56266 1.23633 1.05633 1.22627 0.94553 0.85158 1.00740 1.21897 0.97436 1.01250 0.95053 1.21165 0.96903 0.97139 0.94856 1.20786 0.93944 0.87555 0.94562 1.42524 1.42667 1.03556 1.49580 1.19610 1.10506 0.92443 1.15131 0.91268 1.25465 1.02789 0.95167 1.02886 1.69785 1.46466 0.96922 1.48329 0.85152 0.78943 0.77530 0.78604 1.19511 1.22021 1.21899 1.21789 0.97784 0.96506 0.99245 1.21592 0.95904 0.97357 0.85864 1.21946 0.96551 1.01889 0.95296 1.22766 0.93066 0.83684 1.02736 1.87891 1.74731 1.29026 1.39647 1.22669 0.94020 0.98940 0.86175 1.22754 0.96633 0.93768 1.06638 0.94097 0.92075 0.89226 0.91209 0.89697 0.89203 0.86551 0.92816 0.91233 0.90874 0.97116 0.96577 0.78985 0.93944 0.92730 0.89651 0.90194 0.89912 0.91105 0.88839 0.87598 0.93654 0.86097 0.94736 0.87379 0.87331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 113.37 1.25 1.75 16 2 O -0.41 -9.57 9.79 -148.98 -1.46 -11.03 16 3 C 0.06 1.08 4.56 71.98 0.33 1.40 16 4 C -0.08 -1.49 0.34 -52.81 -0.02 -1.51 16 5 C 0.53 13.73 4.56 87.66 0.40 14.13 16 6 O -0.57 -18.75 13.57 -3.01 -0.04 -18.79 16 7 N -0.60 -14.14 2.95 -818.08 -2.42 -16.56 16 8 C 0.09 1.85 4.07 86.51 0.35 2.21 16 9 C -0.12 -3.21 5.24 30.82 0.16 -3.05 16 10 C -0.08 -2.41 2.19 -10.77 -0.02 -2.43 16 11 C 0.16 6.14 5.65 86.38 0.49 6.63 16 12 N -0.74 -36.16 5.32 -343.45 -1.83 -37.99 16 13 C -0.24 -13.45 9.99 84.03 0.84 -12.61 16 14 H 0.07 3.73 7.83 -2.91 -0.02 3.70 16 15 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 16 N -0.96 -56.85 13.06 21.65 0.28 -56.56 16 17 Si 0.97 45.28 29.55 68.60 2.03 47.30 16 18 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 19 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 20 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 21 C -0.11 -2.90 5.36 30.67 0.16 -2.74 16 22 C 0.12 2.72 6.44 86.36 0.56 3.27 16 23 C -0.12 -2.38 4.43 30.74 0.14 -2.25 16 24 C 0.05 1.15 6.56 72.07 0.47 1.62 16 25 O -0.39 -8.38 10.77 -148.98 -1.60 -9.99 16 26 C 0.06 1.01 6.62 72.01 0.48 1.48 16 27 C -0.16 -2.35 4.53 30.69 0.14 -2.22 16 28 H 0.04 0.77 8.14 -2.38 -0.02 0.75 16 29 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 30 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.07 1.24 5.12 -2.39 -0.01 1.23 16 32 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.09 1.59 7.99 -2.39 -0.02 1.57 16 34 H 0.12 1.96 2.48 -2.39 -0.01 1.96 16 35 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.07 2.18 7.15 -2.39 -0.02 2.16 16 37 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 38 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 39 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.38 19.12 6.84 -92.71 -0.63 18.48 16 41 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 42 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 44 H 0.08 2.08 7.00 -2.39 -0.02 2.07 16 45 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 46 H 0.07 1.70 7.69 -2.38 -0.02 1.68 16 47 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 48 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 49 H 0.05 1.19 6.09 -2.39 -0.01 1.18 16 50 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 51 H 0.03 0.70 7.38 -2.39 -0.02 0.68 16 52 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 53 H 0.11 1.37 4.30 -2.39 -0.01 1.36 16 Total: -1.00 -70.25 393.68 1.42 -68.82 By element: Atomic # 1 Polarization: 32.31 SS G_CDS: 0.27 Total: 32.58 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: 6.19 Total: 2.21 kcal Atomic # 7 Polarization: -107.15 SS G_CDS: -3.96 Total: -111.11 kcal Atomic # 8 Polarization: -36.70 SS G_CDS: -3.10 Total: -39.80 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.30 kcal Total: -70.25 1.42 -68.82 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205430526.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.398 kcal (2) G-P(sol) polarization free energy of solvation -70.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds