Wall clock time and date at job start Sat Apr 11 2020 06:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42890 * 114.00176 * 2 1 4 4 H 1.09001 * 109.57592 * 29.84719 * 3 2 1 5 5 C 1.53104 * 109.45622 * 269.63419 * 3 2 1 6 6 O 1.42905 * 109.48994 * 297.61890 * 5 3 2 7 7 C 1.42894 * 114.09322 * 298.88645 * 6 5 3 8 8 C 1.53093 * 109.41838 * 61.15611 * 7 6 5 9 9 C 1.53171 * 109.16301 * 302.38800 * 8 7 6 10 10 H 1.08999 * 109.54917 * 297.02599 * 9 8 7 11 11 C 1.53000 * 109.54380 * 176.84426 * 9 8 7 12 12 C 1.50705 * 109.46902 * 65.18109 * 11 9 8 13 13 O 1.21281 * 120.00128 * 359.97438 * 12 11 9 14 14 N 1.34770 * 119.99886 * 179.97438 * 12 11 9 15 15 C 1.46935 * 120.62923 * 179.97438 * 14 12 11 16 16 C 1.53196 * 108.77520 * 233.62950 * 15 14 12 17 17 C 1.53038 * 109.31230 * 305.36913 * 16 15 14 18 18 C 1.53004 * 109.45652 * 181.38713 * 17 16 15 19 19 N 1.46504 * 109.46932 * 174.97212 * 18 17 16 20 20 C 1.36934 * 119.99567 * 179.97438 * 19 18 17 21 21 H 1.08001 * 120.00537 * 359.97438 * 20 19 18 22 22 C 1.38811 * 119.99798 * 179.97438 * 20 19 18 23 23 N 1.31624 * 120.00134 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00229 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.47228 * 179.97438 * 24 22 20 26 26 H 1.48501 * 109.46793 * 299.99987 * 24 22 20 27 27 H 1.48500 * 109.47000 * 60.00079 * 24 22 20 28 28 C 1.53035 * 109.52975 * 61.37038 * 17 16 15 29 29 C 1.46928 * 120.63289 * 0.02562 * 14 12 11 30 30 H 1.08996 * 109.46516 * 299.99719 * 1 2 3 31 31 H 1.08995 * 109.47098 * 59.99855 * 1 2 3 32 32 H 1.09002 * 109.47039 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.40898 * 177.63289 * 5 3 2 34 34 H 1.09007 * 109.49079 * 57.64742 * 5 3 2 35 35 H 1.09003 * 109.48403 * 301.17369 * 7 6 5 36 36 H 1.09004 * 109.48338 * 181.14172 * 7 6 5 37 37 H 1.09007 * 109.52392 * 182.48432 * 8 7 6 38 38 H 1.08996 * 109.52328 * 62.30001 * 8 7 6 39 39 H 1.08999 * 109.47272 * 305.18171 * 11 9 8 40 40 H 1.09005 * 109.47090 * 185.17709 * 11 9 8 41 41 H 1.08999 * 109.58194 * 113.84720 * 15 14 12 42 42 H 1.08999 * 109.70396 * 353.49024 * 15 14 12 43 43 H 1.08994 * 109.49611 * 185.41387 * 16 15 14 44 44 H 1.09003 * 109.51889 * 65.33808 * 16 15 14 45 45 H 1.09002 * 109.46072 * 301.35586 * 17 16 15 46 46 H 1.08998 * 109.47524 * 54.96857 * 18 17 16 47 47 H 1.08997 * 109.47093 * 294.96757 * 18 17 16 48 48 H 0.97000 * 119.99825 * 359.97438 * 19 18 17 49 49 H 0.97005 * 119.99717 * 0.02562 * 23 22 20 50 50 H 1.08999 * 109.49459 * 58.58227 * 28 17 16 51 51 H 1.09002 * 109.49678 * 178.67098 * 28 17 16 52 52 H 1.08999 * 109.58611 * 246.15113 * 29 14 12 53 53 H 1.09000 * 109.58374 * 6.43922 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 1 1.3451 2.0013 0.5111 5 6 2.2261 1.7675 -1.4436 6 8 3.1455 0.8874 -2.0935 7 6 4.4398 0.8462 -1.4895 8 6 4.3134 0.3450 -0.0485 9 6 3.3608 1.2644 0.7218 10 1 3.7807 2.2693 0.7670 11 6 3.1664 0.7267 2.1409 12 6 4.4731 0.7978 2.8884 13 8 5.4625 1.2351 2.3399 14 7 4.5422 0.3755 4.1664 15 6 5.8091 0.4381 4.9080 16 6 6.1158 -0.9504 5.4780 17 6 4.9240 -1.4309 6.3091 18 6 5.2406 -2.8026 6.9085 19 7 4.1513 -3.2092 7.7998 20 6 4.2140 -4.4107 8.4536 21 1 5.0662 -5.0589 8.3119 22 6 3.1822 -4.7958 9.2986 23 7 2.1437 -4.0057 9.4717 24 14 3.2673 -6.4352 10.1900 25 1 2.0516 -6.6083 11.0250 26 1 3.3465 -7.5355 9.1959 27 1 4.4718 -6.4646 11.0581 28 6 3.6868 -1.5385 5.4148 29 6 3.3524 -0.1572 4.8442 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 2.6304 2.7797 -1.4432 34 1 1.2746 1.7562 -1.9752 35 1 4.8731 1.8464 -1.4898 36 1 5.0832 0.1712 -2.0540 37 1 5.2938 0.3548 0.4279 38 1 3.9180 -0.6707 -0.0495 39 1 2.8305 -0.3092 2.0942 40 1 2.4188 1.3281 2.6582 41 1 5.7202 1.1562 5.7232 42 1 6.6126 0.7436 4.2378 43 1 7.0021 -0.8964 6.1102 44 1 6.2943 -1.6486 4.6602 45 1 4.7308 -0.7196 7.1121 46 1 6.1708 -2.7462 7.4738 47 1 5.3462 -3.5337 6.1070 48 1 3.3857 -2.6272 7.9268 49 1 2.0994 -3.1546 9.0086 50 1 3.8880 -2.2308 4.5974 51 1 2.8441 -1.9032 6.0020 52 1 3.0629 0.5123 5.6542 53 1 2.5331 -0.2431 4.1305 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205445154.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:56 Heat of formation + Delta-G solvation = -148.878331 kcal Electronic energy + Delta-G solvation = -31087.639283 eV Core-core repulsion = 26958.221176 eV Total energy + Delta-G solvation = -4129.418108 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.61761 -40.59207 -39.00713 -37.92930 -36.83675 -35.22877 -34.66421 -32.54610 -31.86250 -31.47649 -29.95483 -27.91207 -27.43006 -25.65660 -24.69416 -24.38063 -24.31792 -23.14921 -21.57284 -20.91377 -19.95242 -19.35147 -18.31879 -17.57750 -17.40339 -17.07329 -16.82604 -16.66395 -16.46236 -16.15870 -15.87559 -15.84105 -15.60417 -15.32949 -14.96658 -14.87211 -14.75572 -14.35227 -14.17631 -14.00491 -13.73095 -13.57329 -13.41039 -13.13269 -13.06004 -12.77334 -12.59838 -12.58468 -12.27145 -12.22969 -12.01834 -11.95418 -11.87991 -11.76405 -11.59939 -11.49229 -11.31031 -11.18285 -11.00632 -10.93306 -10.71144 -10.05342 -9.67495 -9.11097 -8.40692 -5.34084 1.58202 1.59294 1.67659 1.84429 1.97726 2.70338 2.73805 3.07717 3.38346 3.39002 3.61972 3.65763 3.73286 3.74903 3.81841 3.87304 3.98560 4.09966 4.15307 4.28307 4.29765 4.33654 4.33809 4.44043 4.48570 4.50164 4.53068 4.54530 4.61720 4.63536 4.73513 4.74248 4.78712 4.79744 4.85925 4.89246 4.93657 4.97183 5.00026 5.03933 5.05445 5.14886 5.20312 5.33538 5.41570 5.53701 5.57420 6.13763 6.38194 6.40945 6.50395 7.09643 7.13991 8.00091 8.10994 9.11712 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.015896 B = 0.002274 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.018004 B =12311.638316 C =13339.021878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.393 6.393 3 C 0.059 3.941 4 H 0.095 0.905 5 C 0.036 3.964 6 O -0.396 6.396 7 C 0.063 3.937 8 C -0.146 4.146 9 C -0.066 4.066 10 H 0.090 0.910 11 C -0.126 4.126 12 C 0.513 3.487 13 O -0.574 6.574 14 N -0.610 5.610 15 C 0.116 3.884 16 C -0.116 4.116 17 C -0.084 4.084 18 C 0.162 3.838 19 N -0.753 5.753 20 C -0.338 4.338 21 H 0.061 0.939 22 C -0.101 4.101 23 N -0.973 5.973 24 Si 1.126 2.874 25 H -0.290 1.290 26 H -0.279 1.279 27 H -0.279 1.279 28 C -0.120 4.120 29 C 0.113 3.887 30 H 0.055 0.945 31 H 0.049 0.951 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.105 0.895 35 H 0.058 0.942 36 H 0.095 0.905 37 H 0.074 0.926 38 H 0.056 0.944 39 H 0.100 0.900 40 H 0.115 0.885 41 H 0.079 0.921 42 H 0.086 0.914 43 H 0.085 0.915 44 H 0.057 0.943 45 H 0.070 0.930 46 H 0.015 0.985 47 H 0.010 0.990 48 H 0.364 0.636 49 H 0.246 0.754 50 H 0.055 0.945 51 H 0.063 0.937 52 H 0.083 0.917 53 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.820 16.390 -20.988 26.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.312 6.312 3 C 0.001 3.999 4 H 0.113 0.887 5 C -0.041 4.041 6 O -0.315 6.315 7 C -0.014 4.014 8 C -0.183 4.183 9 C -0.085 4.085 10 H 0.109 0.891 11 C -0.165 4.165 12 C 0.304 3.696 13 O -0.454 6.454 14 N -0.343 5.343 15 C -0.007 4.007 16 C -0.154 4.154 17 C -0.103 4.103 18 C 0.036 3.964 19 N -0.398 5.398 20 C -0.469 4.469 21 H 0.079 0.921 22 C -0.293 4.293 23 N -0.621 5.621 24 Si 0.951 3.049 25 H -0.216 1.216 26 H -0.205 1.205 27 H -0.205 1.205 28 C -0.158 4.158 29 C -0.009 4.009 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.104 0.896 33 H 0.092 0.908 34 H 0.123 0.877 35 H 0.076 0.924 36 H 0.113 0.887 37 H 0.093 0.907 38 H 0.075 0.925 39 H 0.118 0.882 40 H 0.133 0.867 41 H 0.097 0.903 42 H 0.104 0.896 43 H 0.103 0.897 44 H 0.076 0.924 45 H 0.089 0.911 46 H 0.033 0.967 47 H 0.028 0.972 48 H 0.196 0.804 49 H 0.056 0.944 50 H 0.074 0.926 51 H 0.081 0.919 52 H 0.101 0.899 53 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -0.812 15.194 -20.423 25.468 hybrid contribution 0.561 1.123 -0.492 1.348 sum -0.251 16.317 -20.916 26.528 Atomic orbital electron populations 1.22954 0.80033 1.03424 1.00857 1.87975 1.20736 1.27473 1.95058 1.22909 0.94720 0.86016 0.96260 0.88707 1.23238 0.94404 0.93375 0.93105 1.87914 1.22912 1.66314 1.54365 1.22613 0.84498 1.01156 0.93116 1.22169 1.00603 0.99354 0.96211 1.21042 0.94316 1.00384 0.92747 0.89149 1.21678 0.94632 1.04919 0.95300 1.21112 0.91333 0.76179 0.81020 1.90621 1.39178 1.48013 1.67631 1.48261 1.11360 1.62220 1.12438 1.21562 0.86352 0.96721 0.96036 1.21807 0.97850 0.96547 0.99238 1.21198 0.95878 0.95812 0.97366 1.20745 0.90190 0.94174 0.91304 1.42541 1.22440 1.20766 1.54057 1.20375 1.06056 0.97211 1.23282 0.92082 1.27167 0.93267 1.08382 1.00473 1.70997 1.31809 1.12256 1.46992 0.82644 0.75768 0.71101 0.75383 1.21639 1.20541 1.20505 1.21799 0.98000 0.97224 0.98777 1.21847 0.87076 0.93870 0.98092 0.92686 0.93189 0.89590 0.90826 0.87746 0.92386 0.88660 0.90724 0.92525 0.88190 0.86665 0.90293 0.89589 0.89675 0.92376 0.91120 0.96671 0.97168 0.80361 0.94397 0.92622 0.91878 0.89872 0.87593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 10.82 113.37 1.23 1.51 16 2 O -0.39 -7.04 9.08 -141.92 -1.29 -8.33 16 3 C 0.06 0.84 2.44 30.69 0.07 0.91 16 4 H 0.10 0.87 7.79 -2.39 -0.02 0.85 16 5 C 0.04 0.51 6.48 72.02 0.47 0.98 16 6 O -0.40 -8.23 10.70 -141.92 -1.52 -9.75 16 7 C 0.06 1.18 6.84 72.01 0.49 1.67 16 8 C -0.15 -3.06 4.97 30.68 0.15 -2.91 16 9 C -0.07 -1.14 1.75 -10.67 -0.02 -1.16 16 10 H 0.09 1.55 7.96 -2.39 -0.02 1.53 16 11 C -0.13 -2.15 3.28 29.85 0.10 -2.06 16 12 C 0.51 11.78 7.44 87.66 0.65 12.43 16 13 O -0.57 -16.38 13.40 -3.03 -0.04 -16.42 16 14 N -0.61 -13.50 2.97 -818.96 -2.43 -15.93 16 15 C 0.12 2.60 6.43 86.36 0.56 3.15 16 16 C -0.12 -2.87 5.36 30.67 0.16 -2.71 16 17 C -0.08 -2.51 2.19 -10.77 -0.02 -2.53 16 18 C 0.16 6.53 5.65 86.38 0.49 7.01 16 19 N -0.75 -37.87 5.32 -343.44 -1.83 -39.70 16 20 C -0.34 -19.23 9.99 84.03 0.84 -18.39 16 21 H 0.06 3.43 7.83 -2.91 -0.02 3.41 16 22 C -0.10 -5.89 5.50 84.86 0.47 -5.42 16 23 N -0.97 -60.12 13.70 21.65 0.30 -59.82 16 24 Si 1.13 51.90 29.92 68.60 2.05 53.95 16 25 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 26 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 27 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 28 C -0.12 -3.33 5.24 30.65 0.16 -3.17 16 29 C 0.11 2.31 6.34 86.35 0.55 2.85 16 30 H 0.05 0.50 8.09 -2.39 -0.02 0.48 16 31 H 0.05 0.48 7.86 -2.39 -0.02 0.46 16 32 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.10 1.21 7.86 -2.38 -0.02 1.19 16 35 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.07 1.84 6.05 -2.38 -0.01 1.82 16 38 H 0.06 1.37 7.84 -2.39 -0.02 1.35 16 39 H 0.10 1.84 7.33 -2.39 -0.02 1.83 16 40 H 0.12 1.39 7.94 -2.38 -0.02 1.37 16 41 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.09 2.05 7.01 -2.39 -0.02 2.04 16 43 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 44 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 46 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 47 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 48 H 0.36 18.48 5.68 -92.71 -0.53 17.96 16 49 H 0.25 14.96 6.77 -92.70 -0.63 14.34 16 50 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 51 H 0.06 2.04 7.15 -2.39 -0.02 2.02 16 52 H 0.08 1.53 8.14 -2.39 -0.02 1.52 16 53 H 0.11 1.71 5.93 -2.39 -0.01 1.70 16 Total: -1.00 -73.33 403.90 2.08 -71.25 By element: Atomic # 1 Polarization: 32.07 SS G_CDS: 0.50 Total: 32.57 kcal Atomic # 6 Polarization: -14.16 SS G_CDS: 6.34 Total: -7.82 kcal Atomic # 7 Polarization: -111.49 SS G_CDS: -3.96 Total: -115.45 kcal Atomic # 8 Polarization: -31.65 SS G_CDS: -2.85 Total: -34.50 kcal Atomic # 14 Polarization: 51.90 SS G_CDS: 2.05 Total: 53.95 kcal Total: -73.33 2.08 -71.25 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205445154.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.627 kcal (2) G-P(sol) polarization free energy of solvation -73.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds