Wall clock time and date at job start Sat Apr 11 2020 06:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47267 * 2 1 4 4 C 1.52997 * 109.47189 * 120.00133 * 2 1 3 5 5 O 1.45209 * 109.47099 * 240.00068 * 2 1 3 6 6 C 1.34224 * 116.99594 * 60.00062 * 5 2 1 7 7 O 1.20824 * 120.00322 * 0.02562 * 6 5 2 8 8 C 1.50702 * 119.99451 * 179.97438 * 6 5 2 9 9 C 1.53001 * 109.46822 * 180.02562 * 8 6 5 10 10 C 1.53005 * 109.47182 * 180.02562 * 9 8 6 11 11 H 1.09002 * 109.46720 * 305.00020 * 10 9 8 12 12 N 1.46901 * 109.47085 * 64.99802 * 10 9 8 13 13 C 1.50699 * 109.47139 * 185.00138 * 10 9 8 14 14 O 1.21275 * 120.00122 * 259.99536 * 13 10 9 15 15 N 1.34780 * 119.99839 * 80.00269 * 13 10 9 16 16 C 1.46504 * 119.99756 * 180.02562 * 15 13 10 17 17 H 1.09003 * 109.41107 * 324.99595 * 16 15 13 18 18 C 1.52957 * 109.41541 * 84.85339 * 16 15 13 19 19 C 1.53236 * 109.39704 * 183.77567 * 18 16 15 20 20 C 1.51270 * 108.48411 * 305.26443 * 19 18 16 21 21 C 1.37875 * 120.85234 * 231.37186 * 20 19 18 22 22 N 1.31511 * 119.99966 * 348.87850 * 21 20 19 23 23 Si 1.86800 * 120.00218 * 168.88373 * 21 20 19 24 24 H 1.48500 * 109.46917 * 354.65578 * 23 21 20 25 25 H 1.48496 * 109.47525 * 114.65838 * 23 21 20 26 26 H 1.48506 * 109.46725 * 234.65914 * 23 21 20 27 27 C 1.51272 * 118.29874 * 51.38990 * 20 19 18 28 28 C 1.52956 * 109.41192 * 205.14104 * 16 15 13 29 29 H 1.09000 * 109.46638 * 59.99709 * 1 2 3 30 30 H 1.09001 * 109.47208 * 300.00012 * 1 2 3 31 31 H 1.08991 * 109.47320 * 179.97438 * 1 2 3 32 32 H 1.09008 * 109.47252 * 60.00528 * 3 2 1 33 33 H 1.09009 * 109.47065 * 179.97438 * 3 2 1 34 34 H 1.08991 * 109.47584 * 299.99865 * 3 2 1 35 35 H 1.09006 * 109.47247 * 60.00022 * 4 2 1 36 36 H 1.09002 * 109.47723 * 179.97438 * 4 2 1 37 37 H 1.08998 * 109.47654 * 299.99983 * 4 2 1 38 38 H 1.08998 * 109.47667 * 300.00002 * 8 6 5 39 39 H 1.08999 * 109.47342 * 60.00646 * 8 6 5 40 40 H 1.09000 * 109.47437 * 300.00235 * 9 8 6 41 41 H 1.09001 * 109.47197 * 60.00316 * 9 8 6 42 42 H 1.00897 * 110.99627 * 60.00667 * 12 10 9 43 43 H 1.00896 * 110.99717 * 183.95360 * 12 10 9 44 44 H 0.96996 * 119.99970 * 359.97438 * 15 13 10 45 45 H 1.08996 * 109.48035 * 303.68690 * 18 16 15 46 46 H 1.08998 * 109.48069 * 63.72261 * 18 16 15 47 47 H 1.09004 * 109.61894 * 185.59335 * 19 18 16 48 48 H 1.08999 * 109.84948 * 65.08027 * 19 18 16 49 49 H 0.96999 * 120.00406 * 180.02562 * 22 21 20 50 50 H 1.08997 * 109.62426 * 188.93394 * 27 20 19 51 51 H 1.09000 * 109.78390 * 68.46171 * 27 20 19 52 52 H 1.09003 * 109.48218 * 296.27222 * 28 16 15 53 53 H 1.08997 * 109.48837 * 56.29837 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 8 2.0140 -0.6845 -1.1856 6 6 1.6533 -0.1744 -2.3736 7 8 0.9567 0.8117 -2.4213 8 6 2.1183 -0.8309 -3.6479 9 6 1.5716 -0.0569 -4.8492 10 6 2.0431 -0.7238 -6.1430 11 1 3.1302 -0.8034 -6.1354 12 7 1.4545 -2.0659 -6.2449 13 6 1.6085 0.1063 -7.3233 14 8 0.6264 -0.2118 -7.9597 15 7 2.3114 1.2023 -7.6717 16 6 1.8886 2.0096 -8.8188 17 1 1.4731 1.3575 -9.5872 18 6 0.8224 3.0106 -8.3707 19 6 0.3126 3.7900 -9.5875 20 6 1.4986 4.4160 -10.2874 21 6 1.5092 5.7598 -10.5958 22 7 0.4070 6.4686 -10.4848 23 14 3.0889 6.5736 -11.1716 24 1 4.2064 5.5992 -11.0885 25 1 2.9294 7.0252 -12.5772 26 1 3.3868 7.7434 -10.3066 27 6 2.6727 3.5299 -10.6405 28 6 3.0956 2.7586 -9.3859 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6768 1.9563 0.8901 33 1 3.1301 1.4424 0.0005 34 1 1.6768 1.9563 -0.8899 35 1 1.6767 -1.7490 1.2492 36 1 3.1300 -0.7217 1.2491 37 1 1.6767 -0.2075 2.1392 38 1 3.2078 -0.8298 -3.6807 39 1 1.7548 -1.8580 -3.6811 40 1 0.4821 -0.0576 -4.8167 41 1 1.9355 0.9700 -4.8159 42 1 0.4467 -2.0188 -6.2538 43 1 1.8010 -2.5519 -7.0583 44 1 3.0968 1.4569 -7.1626 45 1 -0.0074 2.4755 -7.9091 46 1 1.2549 3.7034 -7.6488 47 1 -0.3736 4.5713 -9.2605 48 1 -0.2011 3.1143 -10.2712 49 1 0.4142 7.4139 -10.7022 50 1 3.5026 4.1439 -10.9900 51 1 2.3827 2.8273 -11.4217 52 1 3.4731 3.4576 -8.6395 53 1 3.8779 2.0450 -9.6441 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001220094708.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:21 Heat of formation + Delta-G solvation = -176.443038 kcal Electronic energy + Delta-G solvation = -30448.737906 eV Core-core repulsion = 26318.124503 eV Total energy + Delta-G solvation = -4130.613403 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.84791 -41.11798 -38.72349 -38.18139 -36.41316 -35.41629 -35.03960 -33.40848 -32.41344 -31.51148 -29.49641 -28.38352 -28.28242 -27.67425 -24.87623 -23.64364 -23.33787 -22.13013 -21.37745 -20.96468 -20.52317 -18.68331 -18.09677 -17.87973 -17.54666 -17.27008 -17.12960 -16.71059 -16.40157 -15.87779 -15.50030 -15.44608 -15.16541 -14.97431 -14.66680 -14.59945 -14.56579 -14.10963 -14.02974 -13.79510 -13.44337 -13.36531 -13.09802 -13.05421 -12.92766 -12.84570 -12.82938 -12.80115 -12.58024 -12.48445 -12.36120 -12.07902 -11.98930 -11.94066 -11.86562 -11.36871 -11.35136 -11.22736 -10.96720 -10.89956 -10.72297 -10.49676 -9.90538 -9.76808 -8.18835 -6.13443 1.28557 1.40256 1.42930 1.51165 1.52786 1.82930 2.29358 2.41455 3.08675 3.44623 3.62326 3.74372 3.78045 3.80173 3.96654 3.98004 4.06756 4.14690 4.20741 4.25999 4.46619 4.47123 4.59090 4.59864 4.67960 4.71183 4.75935 4.82955 4.84871 4.88825 4.95729 4.96735 5.01995 5.02596 5.11969 5.13934 5.16871 5.19128 5.25613 5.27376 5.31138 5.52722 5.54961 5.62909 5.66823 5.75570 5.77843 5.96475 6.31548 6.38666 6.64875 6.88477 6.91840 7.30031 7.44445 8.92909 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014291 B = 0.002253 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.858903 B =12423.857127 C =13480.706971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.106 3.894 3 C -0.181 4.181 4 C -0.136 4.136 5 O -0.355 6.355 6 C 0.458 3.542 7 O -0.534 6.534 8 C -0.094 4.094 9 C -0.089 4.089 10 C 0.091 3.909 11 H 0.141 0.859 12 N -0.811 5.811 13 C 0.472 3.528 14 O -0.592 6.592 15 N -0.709 5.709 16 C 0.165 3.835 17 H 0.052 0.948 18 C -0.100 4.100 19 C 0.011 3.989 20 C -0.501 4.501 21 C 0.016 3.984 22 N -0.934 5.934 23 Si 0.942 3.058 24 H -0.225 1.225 25 H -0.286 1.286 26 H -0.288 1.288 27 C -0.025 4.025 28 C -0.104 4.104 29 H 0.056 0.944 30 H 0.086 0.914 31 H 0.065 0.935 32 H 0.085 0.915 33 H 0.067 0.933 34 H 0.057 0.943 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.094 0.906 38 H 0.135 0.865 39 H 0.128 0.872 40 H 0.052 0.948 41 H 0.076 0.924 42 H 0.345 0.655 43 H 0.351 0.649 44 H 0.414 0.586 45 H 0.021 0.979 46 H 0.049 0.951 47 H 0.018 0.982 48 H -0.015 1.015 49 H 0.262 0.738 50 H 0.053 0.947 51 H 0.015 0.985 52 H 0.065 0.935 53 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.665 -17.706 22.146 30.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.070 3.930 3 C -0.238 4.238 4 C -0.193 4.193 5 O -0.272 6.272 6 C 0.303 3.697 7 O -0.424 6.424 8 C -0.131 4.131 9 C -0.128 4.128 10 C -0.025 4.025 11 H 0.159 0.841 12 N -0.339 5.339 13 C 0.257 3.743 14 O -0.473 6.473 15 N -0.359 5.359 16 C 0.060 3.940 17 H 0.070 0.930 18 C -0.139 4.139 19 C -0.027 4.027 20 C -0.520 4.520 21 C -0.182 4.182 22 N -0.573 5.573 23 Si 0.768 3.232 24 H -0.149 1.149 25 H -0.213 1.213 26 H -0.215 1.215 27 C -0.063 4.063 28 C -0.143 4.143 29 H 0.075 0.925 30 H 0.104 0.896 31 H 0.084 0.916 32 H 0.104 0.896 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.113 0.887 38 H 0.153 0.847 39 H 0.146 0.854 40 H 0.071 0.929 41 H 0.094 0.906 42 H 0.158 0.842 43 H 0.164 0.836 44 H 0.250 0.750 45 H 0.040 0.960 46 H 0.067 0.933 47 H 0.036 0.964 48 H 0.003 0.997 49 H 0.072 0.928 50 H 0.072 0.928 51 H 0.034 0.966 52 H 0.084 0.916 53 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 10.061 -17.634 22.423 30.249 hybrid contribution -0.628 1.757 -1.307 2.278 sum 9.433 -15.877 21.116 28.052 Atomic orbital electron populations 1.22463 0.94428 1.02997 1.03970 1.22430 0.94294 0.92699 0.83534 1.22463 1.01956 0.95403 1.04003 1.21861 1.02506 1.01123 0.93770 1.86550 1.69756 1.55959 1.14969 1.24290 0.76794 0.82169 0.86468 1.90626 1.36598 1.26943 1.88210 1.21327 1.04879 1.01541 0.85386 1.21230 1.01076 0.99134 0.91358 1.21623 1.02858 0.88126 0.89916 0.84103 1.59253 1.13323 1.13697 1.47624 1.22799 0.82818 0.81576 0.87081 1.90692 1.28425 1.71802 1.56346 1.46254 1.31223 1.26438 1.32004 1.20601 0.95431 0.90804 0.87165 0.93023 1.21746 0.96925 0.96840 0.98425 1.19266 0.96098 0.94276 0.93091 1.20607 1.01539 0.93362 1.36527 1.25792 0.99239 0.97738 0.95444 1.70071 1.28852 1.08222 1.50196 0.85750 0.81699 0.78358 0.77434 1.14885 1.21256 1.21455 1.19919 0.95881 0.96013 0.94461 1.21732 0.95279 0.98330 0.98918 0.92472 0.89551 0.91619 0.89632 0.91400 0.92364 0.91108 0.90964 0.88729 0.84701 0.85392 0.92935 0.90565 0.84244 0.83577 0.74966 0.95972 0.93262 0.96369 0.99661 0.92850 0.92837 0.96614 0.91620 0.90807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.03 8.37 71.98 0.60 -2.43 16 2 C 0.11 1.67 1.13 -10.80 -0.01 1.66 16 3 C -0.18 -2.96 8.37 71.98 0.60 -2.36 16 4 C -0.14 -1.32 8.85 71.98 0.64 -0.68 16 5 O -0.35 -6.42 9.89 -51.36 -0.51 -6.93 16 6 C 0.46 9.08 7.27 71.24 0.52 9.60 16 7 O -0.53 -14.14 11.48 21.97 0.25 -13.89 16 8 C -0.09 -1.28 5.70 29.85 0.17 -1.11 16 9 C -0.09 -1.66 4.13 30.60 0.13 -1.53 16 10 C 0.09 1.58 3.15 44.17 0.14 1.72 16 11 H 0.14 1.48 8.14 -2.39 -0.02 1.46 16 12 N -0.81 -13.45 8.44 -171.79 -1.45 -14.90 16 13 C 0.47 13.25 7.03 87.66 0.62 13.87 16 14 O -0.59 -22.53 15.91 -3.01 -0.05 -22.58 16 15 N -0.71 -19.67 5.07 -442.66 -2.25 -21.91 16 16 C 0.16 6.20 2.35 44.96 0.11 6.31 16 17 H 0.05 2.23 7.57 -2.39 -0.02 2.21 16 18 C -0.10 -4.53 5.50 30.66 0.17 -4.37 16 19 C 0.01 0.58 5.93 30.11 0.18 0.76 16 20 C -0.50 -26.64 5.48 -16.17 -0.09 -26.73 16 21 C 0.02 0.88 5.44 84.65 0.46 1.34 16 22 N -0.93 -56.28 12.82 21.45 0.28 -56.00 16 23 Si 0.94 41.76 27.95 68.60 1.92 43.67 16 24 H -0.23 -8.78 5.58 99.48 0.56 -8.23 16 25 H -0.29 -12.76 7.11 99.48 0.71 -12.06 16 26 H -0.29 -12.78 7.11 99.48 0.71 -12.08 16 27 C -0.02 -1.08 5.65 30.10 0.17 -0.91 16 28 C -0.10 -3.67 5.40 30.65 0.17 -3.51 16 29 H 0.06 1.30 5.89 -2.39 -0.01 1.28 16 30 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 33 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 34 H 0.06 1.29 5.89 -2.39 -0.01 1.28 16 35 H 0.07 0.64 8.14 -2.38 -0.02 0.63 16 36 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.14 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.13 1.55 7.75 -2.39 -0.02 1.53 16 40 H 0.05 1.27 8.10 -2.39 -0.02 1.25 16 41 H 0.08 1.52 8.10 -2.39 -0.02 1.50 16 42 H 0.34 6.90 8.58 -89.70 -0.77 6.13 16 43 H 0.35 5.48 9.06 -89.70 -0.81 4.67 16 44 H 0.41 8.31 8.60 -92.71 -0.80 7.51 16 45 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 46 H 0.05 2.19 8.14 -2.39 -0.02 2.18 16 47 H 0.02 1.07 7.19 -2.38 -0.02 1.05 16 48 H -0.01 -0.86 8.14 -2.39 -0.02 -0.87 16 49 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 50 H 0.05 2.22 4.36 -2.39 -0.01 2.21 16 51 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 52 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 53 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -73.91 412.66 1.15 -72.76 By element: Atomic # 1 Polarization: 29.76 SS G_CDS: -1.60 Total: 28.15 kcal Atomic # 6 Polarization: -12.94 SS G_CDS: 4.56 Total: -8.38 kcal Atomic # 7 Polarization: -89.40 SS G_CDS: -3.42 Total: -92.82 kcal Atomic # 8 Polarization: -43.08 SS G_CDS: -0.30 Total: -43.39 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 1.92 Total: 43.67 kcal Total: -73.91 1.15 -72.76 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220094708.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.684 kcal (2) G-P(sol) polarization free energy of solvation -73.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds