Wall clock time and date at job start Sat Apr 11 2020 06:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42904 * 113.99862 * 2 1 4 4 H 1.09000 * 109.51962 * 330.12913 * 3 2 1 5 5 C 1.53089 * 109.57176 * 90.28117 * 3 2 1 6 6 O 1.42908 * 109.41370 * 62.32871 * 5 3 2 7 7 C 1.42901 * 114.09807 * 61.15441 * 6 5 3 8 8 C 1.53086 * 109.41520 * 298.84445 * 7 6 5 9 9 C 1.53171 * 109.52307 * 209.99996 * 3 2 1 10 10 H 1.08999 * 109.54161 * 177.05967 * 9 3 2 11 11 C 1.53001 * 109.54587 * 56.87930 * 9 3 2 12 12 C 1.50696 * 109.47403 * 174.99917 * 11 9 3 13 13 O 1.21290 * 119.99863 * 0.02562 * 12 11 9 14 14 N 1.34772 * 120.00060 * 179.97438 * 12 11 9 15 15 C 1.46508 * 120.00069 * 180.02562 * 14 12 11 16 16 C 1.52999 * 109.47066 * 180.02562 * 15 14 12 17 17 C 1.53042 * 109.44815 * 64.96578 * 16 15 14 18 18 C 1.53191 * 109.31205 * 181.37637 * 17 16 15 19 19 N 1.46930 * 108.77502 * 305.36547 * 18 17 16 20 20 C 1.36936 * 120.63181 * 233.58643 * 19 18 17 21 21 H 1.07996 * 120.00436 * 152.30999 * 20 19 18 22 22 C 1.38820 * 119.99826 * 332.30826 * 20 19 18 23 23 N 1.31616 * 120.00072 * 342.59806 * 22 20 19 24 24 Si 1.86799 * 119.99731 * 162.59987 * 22 20 19 25 25 H 1.48499 * 109.46914 * 94.35000 * 24 22 20 26 26 H 1.48500 * 109.46920 * 214.34706 * 24 22 20 27 27 H 1.48490 * 109.47281 * 334.34870 * 24 22 20 28 28 C 1.46929 * 118.73666 * 53.60992 * 19 18 17 29 29 C 1.53043 * 109.45830 * 185.02694 * 16 15 14 30 30 H 1.08994 * 109.47122 * 299.99986 * 1 2 3 31 31 H 1.09002 * 109.46797 * 60.00027 * 1 2 3 32 32 H 1.09003 * 109.46880 * 179.97438 * 1 2 3 33 33 H 1.08992 * 109.48488 * 182.30910 * 5 3 2 34 34 H 1.09003 * 109.48554 * 302.34800 * 5 3 2 35 35 H 1.09006 * 109.47614 * 58.82724 * 7 6 5 36 36 H 1.08997 * 109.48124 * 178.85802 * 7 6 5 37 37 H 1.08992 * 109.52191 * 297.69755 * 8 7 6 38 38 H 1.09002 * 109.52162 * 177.50879 * 8 7 6 39 39 H 1.09000 * 109.46948 * 55.00122 * 11 9 3 40 40 H 1.09005 * 109.47246 * 295.00351 * 11 9 3 41 41 H 0.96998 * 120.00536 * 0.02562 * 14 12 11 42 42 H 1.09000 * 109.46971 * 60.00138 * 15 14 12 43 43 H 1.09004 * 109.46685 * 300.00263 * 15 14 12 44 44 H 1.08995 * 109.46198 * 305.00058 * 16 15 14 45 45 H 1.08993 * 109.49848 * 301.32688 * 17 16 15 46 46 H 1.09003 * 109.49706 * 61.42825 * 17 16 15 47 47 H 1.09000 * 109.58836 * 185.58215 * 18 17 16 48 48 H 1.08996 * 109.58883 * 65.15261 * 18 17 16 49 49 H 0.96992 * 120.00302 * 179.97438 * 23 22 20 50 50 H 1.09002 * 109.58168 * 186.60666 * 28 19 18 51 51 H 1.08992 * 109.58772 * 66.17990 * 28 19 18 52 52 H 1.09006 * 109.49412 * 298.57846 * 29 16 15 53 53 H 1.08995 * 109.49813 * 58.67559 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3445 2.0005 -0.5117 5 6 2.2253 1.7711 1.4424 6 8 3.1436 0.8909 2.0938 7 6 4.4383 0.8479 1.4905 8 6 4.3121 0.3452 0.0501 9 6 3.3606 1.2646 -0.7218 10 1 3.7800 2.2697 -0.7679 11 6 3.1666 0.7255 -2.1405 12 6 4.4721 0.8007 -2.8894 13 8 5.4606 1.2417 -2.3422 14 7 4.5415 0.3770 -4.1669 15 6 5.8108 0.4497 -4.8949 16 6 5.6167 -0.0894 -6.3136 17 6 4.6569 0.8244 -7.0790 18 6 4.4379 0.2631 -8.4875 19 7 5.7452 0.0841 -9.1338 20 6 5.9996 0.6396 -10.3593 21 1 7.0103 0.9034 -10.6334 22 6 4.9581 0.8637 -11.2494 23 7 3.8056 0.2506 -11.0817 24 14 5.1926 2.0353 -12.6853 25 1 5.6033 1.2678 -13.8884 26 1 3.9160 2.7420 -12.9610 27 1 6.2447 3.0274 -12.3480 28 6 6.7742 -0.7028 -8.4404 29 6 6.9671 -0.1306 -7.0326 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 2.6304 2.7829 1.4413 34 1 1.2734 1.7611 1.9735 35 1 4.8724 1.8478 1.4899 36 1 5.0806 0.1729 2.0561 37 1 3.9158 -0.6701 0.0520 38 1 5.2926 0.3536 -0.4259 39 1 2.4163 1.3240 -2.6572 40 1 2.8343 -0.3116 -2.0928 41 1 3.7510 0.0240 -4.6045 42 1 6.5609 -0.1488 -4.3779 43 1 6.1432 1.4867 -4.9429 44 1 5.1998 -1.0954 -6.2659 45 1 3.7030 0.8718 -6.5539 46 1 5.0846 1.8247 -7.1485 47 1 3.8352 0.9606 -9.0692 48 1 3.9277 -0.6979 -8.4226 49 1 3.0778 0.4075 -11.7034 50 1 7.7130 -0.6425 -8.9910 51 1 6.4546 -1.7425 -8.3717 52 1 7.3729 0.8787 -7.1024 53 1 7.6573 -0.7629 -6.4743 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223458160.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:29 Heat of formation + Delta-G solvation = -144.823586 kcal Electronic energy + Delta-G solvation = -30580.013749 eV Core-core repulsion = 26450.771468 eV Total energy + Delta-G solvation = -4129.242281 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.35193 -40.32937 -39.29162 -37.90243 -36.43574 -35.09795 -34.50450 -32.46854 -31.51786 -31.45638 -30.12884 -28.15953 -27.40497 -25.86359 -24.42423 -24.31497 -23.80160 -22.54786 -21.44262 -20.90285 -20.56267 -18.73363 -18.09940 -17.53649 -17.43322 -17.01205 -16.81811 -16.65276 -16.38472 -16.16506 -15.91675 -15.64550 -15.30358 -15.16685 -14.91554 -14.81242 -14.65605 -14.14059 -14.04193 -13.86255 -13.73932 -13.40835 -13.30838 -13.10114 -13.04584 -12.83279 -12.56058 -12.54497 -12.28971 -12.20829 -11.99553 -11.96547 -11.83921 -11.71520 -11.60057 -11.28497 -11.20894 -11.12249 -10.98306 -10.71810 -10.53049 -10.05735 -9.97062 -8.66917 -7.87593 -5.31502 1.45291 1.47164 1.56971 1.70580 2.27168 2.51184 2.75531 3.09528 3.26718 3.62962 3.71413 3.71777 3.82309 3.86936 3.91989 3.97423 4.07110 4.17586 4.32674 4.37967 4.47078 4.52714 4.53790 4.56013 4.56103 4.57035 4.66417 4.70350 4.74362 4.76887 4.79925 4.85543 4.93213 4.93654 4.97463 5.04560 5.06700 5.17502 5.19673 5.26175 5.30461 5.35447 5.42289 5.50022 5.58070 5.67141 5.80129 6.15110 6.40037 6.41904 6.61170 7.16201 7.30742 7.88449 8.38818 9.18550 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.021182 B = 0.001979 C = 0.001884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.531168 B =14146.867186 C =14855.374420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.391 6.391 3 C 0.060 3.940 4 H 0.092 0.908 5 C 0.035 3.965 6 O -0.395 6.395 7 C 0.061 3.939 8 C -0.145 4.145 9 C -0.068 4.068 10 H 0.085 0.915 11 C -0.125 4.125 12 C 0.509 3.491 13 O -0.578 6.578 14 N -0.721 5.721 15 C 0.137 3.863 16 C -0.079 4.079 17 C -0.119 4.119 18 C 0.175 3.825 19 N -0.613 5.613 20 C -0.262 4.262 21 H 0.063 0.937 22 C -0.051 4.051 23 N -0.933 5.933 24 Si 0.964 3.036 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.272 1.272 28 C 0.140 3.860 29 C -0.115 4.115 30 H 0.047 0.953 31 H 0.053 0.947 32 H 0.089 0.911 33 H 0.071 0.929 34 H 0.105 0.895 35 H 0.054 0.946 36 H 0.097 0.903 37 H 0.062 0.938 38 H 0.074 0.926 39 H 0.113 0.887 40 H 0.108 0.892 41 H 0.411 0.589 42 H 0.065 0.935 43 H 0.053 0.947 44 H 0.075 0.925 45 H 0.072 0.928 46 H 0.044 0.956 47 H 0.051 0.949 48 H -0.001 1.001 49 H 0.250 0.750 50 H 0.051 0.949 51 H 0.016 0.984 52 H 0.054 0.946 53 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.129 1.616 25.254 26.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.310 6.310 3 C 0.002 3.998 4 H 0.110 0.890 5 C -0.042 4.042 6 O -0.314 6.314 7 C -0.015 4.015 8 C -0.182 4.182 9 C -0.087 4.087 10 H 0.103 0.897 11 C -0.164 4.164 12 C 0.298 3.702 13 O -0.459 6.459 14 N -0.373 5.373 15 C 0.013 3.987 16 C -0.098 4.098 17 C -0.158 4.158 18 C 0.050 3.950 19 N -0.337 5.337 20 C -0.392 4.392 21 H 0.081 0.919 22 C -0.247 4.247 23 N -0.580 5.580 24 Si 0.792 3.208 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.197 1.197 28 C 0.015 3.985 29 C -0.155 4.155 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.108 0.892 33 H 0.089 0.911 34 H 0.123 0.877 35 H 0.072 0.928 36 H 0.115 0.885 37 H 0.081 0.919 38 H 0.093 0.907 39 H 0.131 0.869 40 H 0.126 0.874 41 H 0.248 0.752 42 H 0.084 0.916 43 H 0.071 0.929 44 H 0.094 0.906 45 H 0.090 0.910 46 H 0.063 0.937 47 H 0.069 0.931 48 H 0.017 0.983 49 H 0.059 0.941 50 H 0.070 0.930 51 H 0.034 0.966 52 H 0.072 0.928 53 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.483 1.656 25.686 26.317 hybrid contribution -0.447 0.574 -1.724 1.871 sum -5.930 2.230 23.962 24.785 Atomic orbital electron populations 1.22963 0.80040 1.03543 1.00752 1.87960 1.20713 1.27261 1.95044 1.22869 0.94740 0.86052 0.96145 0.88981 1.23232 0.94430 0.93313 0.93196 1.87909 1.22914 1.66230 1.54358 1.22626 0.84474 1.01067 0.93347 1.22165 1.00598 0.99512 0.95964 1.21032 0.94304 1.00324 0.93014 0.89661 1.21637 0.94323 1.05424 0.95046 1.21162 0.91302 0.76212 0.81560 1.90645 1.39390 1.47438 1.68414 1.46073 1.13554 1.64561 1.13068 1.21249 0.85921 1.00624 0.90908 1.21158 0.96701 0.99437 0.92486 1.22025 0.98915 0.98376 0.96475 1.20613 0.86758 0.96844 0.90821 1.44359 1.11936 1.59351 1.18018 1.19497 0.94035 1.33364 0.92318 0.91906 1.25750 0.97129 1.01594 1.00190 1.70171 1.04745 1.43888 1.39173 0.85319 0.76870 0.79121 0.79496 1.21309 1.21733 1.19687 1.21050 0.91988 0.92903 0.92563 1.21855 0.96302 1.01328 0.95994 0.93393 0.92818 0.89217 0.91118 0.87707 0.92768 0.88458 0.91910 0.90736 0.86856 0.87403 0.75224 0.91646 0.92851 0.90645 0.90963 0.93724 0.93071 0.98270 0.94115 0.93027 0.96605 0.92763 0.89921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 10.82 113.37 1.23 1.47 16 2 O -0.39 -6.36 9.08 -141.93 -1.29 -7.65 16 3 C 0.06 0.83 2.43 30.68 0.07 0.90 16 4 H 0.09 0.86 7.79 -2.39 -0.02 0.84 16 5 C 0.04 0.50 6.49 72.01 0.47 0.96 16 6 O -0.40 -7.96 10.70 -141.93 -1.52 -9.48 16 7 C 0.06 1.12 6.84 72.01 0.49 1.62 16 8 C -0.14 -2.89 4.97 30.68 0.15 -2.74 16 9 C -0.07 -1.15 1.75 -10.68 -0.02 -1.17 16 10 H 0.09 1.54 7.95 -2.39 -0.02 1.52 16 11 C -0.12 -2.00 4.92 29.85 0.15 -1.86 16 12 C 0.51 11.58 7.57 87.66 0.66 12.24 16 13 O -0.58 -17.17 14.00 -3.06 -0.04 -17.22 16 14 N -0.72 -15.61 5.27 -463.04 -2.44 -18.05 16 15 C 0.14 3.48 5.06 86.38 0.44 3.92 16 16 C -0.08 -2.27 2.19 -10.77 -0.02 -2.30 16 17 C -0.12 -4.07 5.25 30.67 0.16 -3.90 16 18 C 0.18 8.11 5.31 86.36 0.46 8.57 16 19 N -0.61 -30.33 2.99 -699.10 -2.09 -32.42 16 20 C -0.26 -14.39 9.59 84.04 0.81 -13.59 16 21 H 0.06 3.39 7.89 -2.91 -0.02 3.37 16 22 C -0.05 -2.86 4.91 84.86 0.42 -2.44 16 23 N -0.93 -54.64 11.19 21.65 0.24 -54.40 16 24 Si 0.96 44.72 29.59 68.60 2.03 46.75 16 25 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 26 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 27 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 28 C 0.14 5.65 6.52 86.36 0.56 6.21 16 29 C -0.12 -3.62 5.36 30.67 0.16 -3.46 16 30 H 0.05 0.41 7.86 -2.39 -0.02 0.39 16 31 H 0.05 0.42 8.09 -2.39 -0.02 0.40 16 32 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.10 1.18 7.86 -2.39 -0.02 1.17 16 35 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 36 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.06 1.37 7.83 -2.39 -0.02 1.35 16 38 H 0.07 1.77 6.07 -2.39 -0.01 1.76 16 39 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.11 1.65 7.78 -2.38 -0.02 1.64 16 41 H 0.41 7.33 7.65 -92.71 -0.71 6.62 16 42 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 44 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 45 H 0.07 2.07 7.15 -2.39 -0.02 2.05 16 46 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 47 H 0.05 2.73 6.04 -2.39 -0.01 2.71 16 48 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 49 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 50 H 0.05 2.06 7.93 -2.39 -0.02 2.04 16 51 H 0.02 0.64 8.14 -2.39 -0.02 0.63 16 52 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 53 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -69.94 406.16 1.25 -68.70 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: 0.17 Total: 19.33 kcal Atomic # 6 Polarization: -1.75 SS G_CDS: 6.19 Total: 4.44 kcal Atomic # 7 Polarization: -100.58 SS G_CDS: -4.29 Total: -104.87 kcal Atomic # 8 Polarization: -31.50 SS G_CDS: -2.85 Total: -34.35 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -69.94 1.25 -68.70 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223458160.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.127 kcal (2) G-P(sol) polarization free energy of solvation -69.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds