Wall clock time and date at job start Sat Apr 11 2020 06:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42896 * 114.00089 * 2 1 4 4 H 1.09004 * 109.57634 * 29.83555 * 3 2 1 5 5 C 1.53101 * 109.52181 * 269.68611 * 3 2 1 6 6 O 1.42899 * 109.41294 * 182.48537 * 5 3 2 7 7 C 1.42900 * 114.09927 * 61.15665 * 6 5 3 8 8 C 1.53089 * 109.41420 * 298.83475 * 7 6 5 9 9 C 1.53176 * 109.52712 * 149.99678 * 3 2 1 10 10 H 1.08999 * 109.61545 * 56.97110 * 9 3 2 11 11 C 1.53006 * 109.54029 * 296.75309 * 9 3 2 12 12 C 1.50697 * 109.46768 * 175.44323 * 11 9 3 13 13 O 1.21281 * 120.00244 * 359.97438 * 12 11 9 14 14 N 1.34782 * 119.99935 * 179.72497 * 12 11 9 15 15 C 1.46500 * 120.00046 * 180.27516 * 14 12 11 16 16 C 1.52997 * 109.47027 * 179.97438 * 15 14 12 17 17 C 1.53031 * 109.46049 * 295.06785 * 16 15 14 18 18 C 1.53193 * 109.31582 * 178.61702 * 17 16 15 19 19 N 1.46921 * 108.77472 * 54.62989 * 18 17 16 20 20 C 1.36941 * 120.62949 * 126.37595 * 19 18 17 21 21 H 1.07996 * 120.00065 * 207.70087 * 20 19 18 22 22 C 1.38818 * 120.00049 * 27.69671 * 20 19 18 23 23 N 1.31626 * 119.99601 * 17.35438 * 22 20 19 24 24 Si 1.86796 * 120.00072 * 197.35442 * 22 20 19 25 25 H 1.48501 * 109.47238 * 60.00003 * 24 22 20 26 26 H 1.48496 * 109.47008 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.47086 * 300.00028 * 24 22 20 28 28 C 1.46930 * 118.74096 * 306.39535 * 19 18 17 29 29 C 1.53040 * 109.45956 * 174.99701 * 16 15 14 30 30 H 1.09005 * 109.46885 * 60.00504 * 1 2 3 31 31 H 1.09005 * 109.46653 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47328 * 300.00168 * 1 2 3 33 33 H 1.08996 * 109.48045 * 62.49817 * 5 3 2 34 34 H 1.09002 * 109.48390 * 302.47050 * 5 3 2 35 35 H 1.09007 * 109.47714 * 178.85668 * 7 6 5 36 36 H 1.08997 * 109.49026 * 58.82765 * 7 6 5 37 37 H 1.08996 * 109.52418 * 297.70716 * 8 7 6 38 38 H 1.08999 * 109.57324 * 177.54410 * 8 7 6 39 39 H 1.08999 * 109.47220 * 55.44523 * 11 9 3 40 40 H 1.09002 * 109.47102 * 295.44025 * 11 9 3 41 41 H 0.96994 * 119.99653 * 0.27573 * 14 12 11 42 42 H 1.09004 * 109.46985 * 299.99547 * 15 14 12 43 43 H 1.08997 * 109.47423 * 59.99375 * 15 14 12 44 44 H 1.09004 * 109.45839 * 55.02978 * 16 15 14 45 45 H 1.09001 * 109.49646 * 298.56778 * 17 16 15 46 46 H 1.08999 * 109.49906 * 58.66232 * 17 16 15 47 47 H 1.09008 * 109.57959 * 294.84834 * 18 17 16 48 48 H 1.08995 * 109.59115 * 174.42448 * 18 17 16 49 49 H 0.96998 * 119.99447 * 180.02562 * 23 22 20 50 50 H 1.08996 * 109.58256 * 293.81943 * 28 19 18 51 51 H 1.09002 * 109.58443 * 173.39729 * 28 19 18 52 52 H 1.09004 * 109.50082 * 301.33820 * 29 16 15 53 53 H 1.09004 * 109.49731 * 61.40421 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 2.0014 0.5110 5 6 2.2256 1.7696 -1.4430 6 8 2.8597 3.0501 -1.4404 7 6 4.1472 3.0625 -0.8203 8 6 4.0090 2.6504 0.6476 9 6 3.3606 1.2646 0.7219 10 1 4.0099 0.5320 0.2424 11 6 3.1464 0.8776 2.1866 12 6 4.4826 0.7287 2.8673 13 8 5.5055 0.9134 2.2424 14 7 4.5408 0.3951 4.1719 15 6 5.8397 0.2563 4.8352 16 6 5.6254 -0.1247 6.3014 17 6 4.9185 1.0217 7.0280 18 6 4.6746 0.6231 8.4869 19 7 5.9546 0.2255 9.0887 20 6 6.3895 0.8056 10.2504 21 1 7.4474 0.8738 10.4569 22 6 5.4706 1.3060 11.1627 23 7 4.2094 0.9350 11.0972 24 14 6.0240 2.5058 12.4832 25 1 6.5912 3.7196 11.8428 26 1 4.8612 2.8868 13.3245 27 1 7.0597 1.8642 13.3324 28 6 6.7594 -0.8062 8.4202 29 6 6.9798 -0.3915 6.9621 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.2630 1.8416 -1.9491 34 1 2.8581 1.0517 -1.9652 35 1 4.5688 4.0660 -0.8780 36 1 4.8050 2.3617 -1.3343 37 1 3.3840 3.3735 1.1716 38 1 4.9946 2.6167 1.1117 39 1 2.6055 -0.0673 2.2374 40 1 2.5684 1.6546 2.6869 41 1 3.7228 0.2470 4.6716 42 1 6.4200 -0.5213 4.3385 43 1 6.3784 1.2023 4.7810 44 1 5.0110 -1.0234 6.3570 45 1 5.5434 1.9141 6.9943 46 1 3.9643 1.2267 6.5425 47 1 3.9772 -0.2137 8.5253 48 1 4.2617 1.4710 9.0333 49 1 3.5673 1.2849 11.7345 50 1 6.2319 -1.7594 8.4533 51 1 7.7220 -0.9012 8.9226 52 1 7.4929 -1.1924 6.4297 53 1 7.5856 0.5141 6.9285 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223458162.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:35 Heat of formation + Delta-G solvation = -146.879932 kcal Electronic energy + Delta-G solvation = -30510.180358 eV Core-core repulsion = 26380.848907 eV Total energy + Delta-G solvation = -4129.331450 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.36953 -40.32959 -39.29479 -38.25817 -36.44535 -35.16871 -34.50889 -32.47426 -31.51667 -31.40515 -30.15479 -28.16840 -27.47654 -25.87701 -24.46368 -24.09423 -23.80613 -22.56340 -21.54203 -21.12775 -20.59039 -18.73709 -18.21596 -17.74094 -17.34647 -17.10994 -16.81640 -16.67809 -16.49989 -16.04797 -15.90858 -15.68357 -15.30658 -15.22138 -14.98481 -14.80588 -14.56851 -14.13720 -14.04625 -13.94392 -13.75249 -13.52853 -13.41901 -13.14203 -13.05882 -12.81306 -12.55889 -12.53840 -12.31983 -12.26264 -12.00544 -11.97166 -11.83917 -11.74062 -11.60134 -11.42560 -11.22920 -11.12186 -11.04666 -10.77096 -10.52267 -10.17308 -9.99342 -8.66923 -7.87352 -5.31465 1.46331 1.48366 1.55111 1.68984 2.25307 2.51382 2.56660 3.06818 3.26720 3.58828 3.61824 3.71817 3.79324 3.86321 3.94574 3.98986 4.05766 4.10751 4.19969 4.31682 4.41456 4.47389 4.51196 4.53737 4.55845 4.59078 4.69621 4.72157 4.74516 4.74798 4.77752 4.84145 4.88100 4.92431 4.93505 5.02402 5.04498 5.16382 5.19208 5.24062 5.27117 5.30702 5.42274 5.48691 5.57604 5.67028 5.80134 6.00645 6.31983 6.40112 6.60055 7.16326 7.29525 7.88590 8.38881 9.18563 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.018517 B = 0.001981 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.768651 B =14130.222205 C =14280.888614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.395 6.395 3 C 0.066 3.934 4 H 0.081 0.919 5 C 0.040 3.960 6 O -0.392 6.392 7 C 0.058 3.942 8 C -0.150 4.150 9 C -0.067 4.067 10 H 0.068 0.932 11 C -0.127 4.127 12 C 0.510 3.490 13 O -0.579 6.579 14 N -0.720 5.720 15 C 0.137 3.863 16 C -0.079 4.079 17 C -0.119 4.119 18 C 0.175 3.825 19 N -0.613 5.613 20 C -0.263 4.263 21 H 0.063 0.937 22 C -0.051 4.051 23 N -0.933 5.933 24 Si 0.964 3.036 25 H -0.280 1.280 26 H -0.293 1.293 27 H -0.276 1.276 28 C 0.141 3.859 29 C -0.115 4.115 30 H 0.051 0.949 31 H 0.096 0.904 32 H 0.052 0.948 33 H 0.108 0.892 34 H 0.055 0.945 35 H 0.108 0.892 36 H 0.052 0.948 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.112 0.888 40 H 0.112 0.888 41 H 0.412 0.588 42 H 0.065 0.935 43 H 0.053 0.947 44 H 0.076 0.924 45 H 0.043 0.957 46 H 0.072 0.928 47 H 0.000 1.000 48 H 0.051 0.949 49 H 0.250 0.750 50 H 0.016 0.984 51 H 0.051 0.949 52 H 0.082 0.918 53 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.404 -0.038 -25.075 26.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.314 6.314 3 C 0.008 3.992 4 H 0.099 0.901 5 C -0.037 4.037 6 O -0.311 6.311 7 C -0.018 4.018 8 C -0.187 4.187 9 C -0.086 4.086 10 H 0.086 0.914 11 C -0.167 4.167 12 C 0.299 3.701 13 O -0.459 6.459 14 N -0.372 5.372 15 C 0.013 3.987 16 C -0.098 4.098 17 C -0.158 4.158 18 C 0.050 3.950 19 N -0.337 5.337 20 C -0.393 4.393 21 H 0.081 0.919 22 C -0.246 4.246 23 N -0.580 5.580 24 Si 0.792 3.208 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.202 1.202 28 C 0.015 3.985 29 C -0.155 4.155 30 H 0.070 0.930 31 H 0.115 0.885 32 H 0.071 0.929 33 H 0.126 0.874 34 H 0.073 0.927 35 H 0.126 0.874 36 H 0.070 0.930 37 H 0.093 0.907 38 H 0.101 0.899 39 H 0.131 0.869 40 H 0.130 0.870 41 H 0.248 0.752 42 H 0.084 0.916 43 H 0.072 0.928 44 H 0.094 0.906 45 H 0.062 0.938 46 H 0.090 0.910 47 H 0.018 0.982 48 H 0.069 0.931 49 H 0.059 0.941 50 H 0.034 0.966 51 H 0.070 0.930 52 H 0.101 0.899 53 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.765 0.116 -25.467 26.350 hybrid contribution -0.197 0.358 1.557 1.610 sum -6.962 0.474 -23.910 24.907 Atomic orbital electron populations 1.23035 0.79406 1.03953 1.01087 1.87911 1.21416 1.27027 1.95074 1.22755 0.94725 0.85422 0.96305 0.90093 1.23098 0.99078 0.85255 0.96286 1.87923 1.32989 1.30721 1.79444 1.22705 0.84304 1.03050 0.91776 1.22329 1.02797 0.95646 0.97959 1.20974 0.95357 0.97924 0.94359 0.91393 1.21675 0.94017 1.05694 0.95302 1.21110 0.92111 0.75245 0.81681 1.90640 1.38043 1.51865 1.65344 1.46063 1.10072 1.70458 1.10608 1.21251 0.85110 1.00853 0.91500 1.21156 0.97631 0.98649 0.92330 1.22026 0.99831 0.97490 0.96465 1.20612 0.86402 0.97290 0.90727 1.44349 1.21546 1.43010 1.24751 1.19470 0.91731 1.32186 0.95958 0.91896 1.25752 0.96274 1.02861 0.99733 1.70171 1.03267 1.45667 1.38856 0.85389 0.76901 0.79508 0.78955 1.20616 1.21919 1.20199 1.21049 0.94594 0.90362 0.92475 1.21857 0.96200 1.01485 0.95951 0.92990 0.88516 0.92893 0.87374 0.92700 0.87415 0.93005 0.90723 0.89938 0.86938 0.87019 0.75191 0.91646 0.92834 0.90596 0.93766 0.90972 0.98242 0.93074 0.94111 0.96572 0.93026 0.89916 0.92776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 10.82 113.37 1.23 1.43 16 2 O -0.39 -6.11 9.75 -148.98 -1.45 -7.56 16 3 C 0.07 0.99 2.21 30.69 0.07 1.05 16 4 H 0.08 1.05 7.79 -2.38 -0.02 1.03 16 5 C 0.04 0.61 6.47 72.02 0.47 1.07 16 6 O -0.39 -7.25 10.76 -148.98 -1.60 -8.85 16 7 C 0.06 0.99 6.84 72.01 0.49 1.48 16 8 C -0.15 -2.74 5.12 30.68 0.16 -2.58 16 9 C -0.07 -1.20 1.64 -10.67 -0.02 -1.22 16 10 H 0.07 1.50 7.96 -2.39 -0.02 1.48 16 11 C -0.13 -2.09 5.12 29.85 0.15 -1.94 16 12 C 0.51 11.76 7.57 87.66 0.66 12.43 16 13 O -0.58 -17.42 13.98 -3.03 -0.04 -17.47 16 14 N -0.72 -15.67 5.27 -463.06 -2.44 -18.11 16 15 C 0.14 3.49 5.06 86.38 0.44 3.92 16 16 C -0.08 -2.27 2.19 -10.77 -0.02 -2.29 16 17 C -0.12 -4.08 5.25 30.67 0.16 -3.92 16 18 C 0.18 8.12 5.31 86.36 0.46 8.58 16 19 N -0.61 -30.33 2.99 -699.10 -2.09 -32.43 16 20 C -0.26 -14.47 9.59 84.03 0.81 -13.67 16 21 H 0.06 3.39 7.89 -2.91 -0.02 3.37 16 22 C -0.05 -2.83 4.91 84.86 0.42 -2.41 16 23 N -0.93 -54.67 11.19 21.65 0.24 -54.43 16 24 Si 0.96 44.78 29.59 68.60 2.03 46.81 16 25 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 26 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 27 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 28 C 0.14 5.65 6.52 86.36 0.56 6.22 16 29 C -0.12 -3.63 5.36 30.67 0.16 -3.46 16 30 H 0.05 0.38 7.96 -2.38 -0.02 0.36 16 31 H 0.10 0.73 8.14 -2.38 -0.02 0.71 16 32 H 0.05 0.41 8.09 -2.39 -0.02 0.39 16 33 H 0.11 1.27 7.96 -2.39 -0.02 1.25 16 34 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.11 1.54 8.14 -2.38 -0.02 1.52 16 36 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.08 1.88 6.03 -2.39 -0.01 1.86 16 39 H 0.11 1.63 7.66 -2.39 -0.02 1.61 16 40 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.41 7.32 7.65 -92.71 -0.71 6.61 16 42 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 43 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 44 H 0.08 2.13 8.14 -2.38 -0.02 2.11 16 45 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 46 H 0.07 2.07 7.15 -2.39 -0.02 2.05 16 47 H 0.00 -0.02 8.14 -2.38 -0.02 -0.04 16 48 H 0.05 2.73 6.04 -2.39 -0.01 2.71 16 49 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 50 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 51 H 0.05 2.06 7.93 -2.39 -0.02 2.04 16 52 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 53 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 Total: -1.00 -68.83 407.23 1.00 -67.83 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: 0.17 Total: 19.53 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: 6.19 Total: 4.68 kcal Atomic # 7 Polarization: -100.68 SS G_CDS: -4.29 Total: -104.97 kcal Atomic # 8 Polarization: -30.78 SS G_CDS: -3.10 Total: -33.88 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -68.83 1.00 -67.83 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223458162.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.053 kcal (2) G-P(sol) polarization free energy of solvation -68.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds