Wall clock time and date at job start Sat Apr 11 2020 06:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42908 * 113.99768 * 2 1 4 4 C 1.52995 * 109.47231 * 180.02562 * 3 2 1 5 5 H 1.09007 * 109.47125 * 304.91059 * 4 3 2 6 6 O 1.42903 * 109.46989 * 64.90629 * 4 3 2 7 7 C 1.42903 * 114.00265 * 269.99971 * 6 4 3 8 8 C 1.50692 * 109.47428 * 184.90749 * 4 3 2 9 9 O 1.21289 * 120.00259 * 249.32592 * 8 4 3 10 10 N 1.34778 * 120.00193 * 69.31557 * 8 4 3 11 11 C 1.46931 * 120.62844 * 354.74799 * 10 8 4 12 12 C 1.53191 * 108.77550 * 126.36632 * 11 10 8 13 13 C 1.53040 * 109.31387 * 54.63353 * 12 11 10 14 14 C 1.52992 * 109.46055 * 178.61170 * 13 12 11 15 15 H 1.09004 * 109.87793 * 303.30046 * 14 13 12 16 16 C 1.54327 * 109.88399 * 64.47270 * 14 13 12 17 17 C 1.55157 * 102.94558 * 141.60879 * 16 14 13 18 18 C 1.54907 * 101.57852 * 324.50013 * 17 16 14 19 19 N 1.47021 * 109.88302 * 182.27887 * 14 13 12 20 20 C 1.36941 * 125.64764 * 61.68323 * 19 14 13 21 21 H 1.07994 * 119.99575 * 12.39892 * 20 19 14 22 22 C 1.38813 * 120.00022 * 192.40459 * 20 19 14 23 23 N 1.31625 * 119.99911 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 119.99858 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47399 * 60.00081 * 24 22 20 26 26 H 1.48507 * 109.47047 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.47040 * 299.99329 * 24 22 20 28 28 C 1.53037 * 109.53686 * 298.63607 * 13 12 11 29 29 C 1.46921 * 120.63451 * 174.72100 * 10 8 4 30 30 H 1.09007 * 109.47026 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47199 * 299.99473 * 1 2 3 32 32 H 1.08996 * 109.47614 * 60.00395 * 1 2 3 33 33 H 1.08999 * 109.46715 * 60.00178 * 3 2 1 34 34 H 1.08998 * 109.47047 * 300.00427 * 3 2 1 35 35 H 1.09002 * 109.47048 * 300.00024 * 7 6 4 36 36 H 1.08996 * 109.47047 * 59.99632 * 7 6 4 37 37 H 1.08994 * 109.47406 * 180.02562 * 7 6 4 38 38 H 1.09001 * 109.58150 * 246.15385 * 11 10 8 39 39 H 1.09000 * 109.58602 * 6.57756 * 11 10 8 40 40 H 1.09002 * 109.49249 * 174.58740 * 12 11 10 41 41 H 1.09000 * 109.49701 * 294.68272 * 12 11 10 42 42 H 1.09010 * 109.45803 * 58.65530 * 13 12 11 43 43 H 1.08999 * 110.71946 * 259.97426 * 16 14 13 44 44 H 1.09002 * 110.71431 * 23.24548 * 16 14 13 45 45 H 1.08992 * 111.00486 * 206.42598 * 17 16 14 46 46 H 1.09003 * 111.03402 * 82.58487 * 17 16 14 47 47 H 1.09003 * 110.36821 * 278.16889 * 18 17 16 48 48 H 1.09001 * 110.45589 * 155.89630 * 18 17 16 49 49 H 0.96996 * 119.99931 * 179.97438 * 23 22 20 50 50 H 1.09000 * 109.49769 * 301.41082 * 28 13 12 51 51 H 1.09002 * 109.52443 * 181.33468 * 28 13 12 52 52 H 1.09000 * 109.58373 * 353.42182 * 29 10 8 53 53 H 1.09000 * 109.58750 * 113.84330 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5354 1.1848 -0.0006 5 1 3.8515 0.5697 0.8419 6 8 3.9646 0.5779 -1.2211 7 6 4.0462 -0.8477 -1.1641 8 6 4.1479 2.5563 0.1209 9 8 4.7395 3.0418 -0.8200 10 7 4.0383 3.2435 1.2751 11 6 3.2286 2.7201 2.3839 12 6 4.0924 2.6782 3.6483 13 6 4.6846 4.0663 3.9030 14 6 5.5200 4.0367 5.1843 15 1 4.9069 3.6963 6.0188 16 6 6.7302 3.0969 5.0003 17 6 7.8665 3.8428 5.7485 18 6 7.5219 5.3217 5.4424 19 7 6.0490 5.3790 5.4674 20 6 5.2978 6.4971 5.7143 21 1 4.2398 6.4044 5.9097 22 6 5.8964 7.7495 5.7133 23 7 7.1861 7.8623 5.4756 24 14 4.8717 9.2747 6.0494 25 1 4.2579 9.1715 7.3977 26 1 5.7409 10.4775 5.9925 27 1 3.8019 9.3877 5.0257 28 6 5.5736 4.4676 2.7237 29 6 4.7265 4.5298 1.4488 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5137 -0.8900 33 1 1.6885 1.8464 0.8900 34 1 1.6885 1.8465 -0.8899 35 1 4.7575 -1.1403 -0.3917 36 1 3.0645 -1.2586 -0.9283 37 1 4.3791 -1.2315 -2.1283 38 1 2.3705 3.3717 2.5490 39 1 2.8852 1.7142 2.1425 40 1 3.4781 2.3830 4.4990 41 1 4.8991 1.9576 3.5141 42 1 3.8775 4.7908 4.0125 43 1 6.5384 2.1269 5.4590 44 1 6.9735 2.9838 3.9438 45 1 8.8422 3.5768 5.3421 46 1 7.8248 3.6456 6.8198 47 1 7.8957 5.6023 4.4577 48 1 7.9401 5.9764 6.2069 49 1 7.6043 8.7375 5.4745 50 1 6.3663 3.7302 2.5982 51 1 6.0140 5.4460 2.9160 52 1 5.3714 4.7180 0.5905 53 1 3.9906 5.3290 1.5377 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230598124.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:41 Heat of formation + Delta-G solvation = -111.486316 kcal Electronic energy + Delta-G solvation = -32113.510116 eV Core-core repulsion = 27985.713448 eV Total energy + Delta-G solvation = -4127.796668 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.71486 -40.14229 -39.14467 -38.10876 -37.56244 -34.78668 -33.89741 -32.67739 -31.32487 -31.05528 -29.11425 -27.95723 -26.92340 -26.52912 -25.66467 -24.43899 -23.93335 -22.50011 -21.77863 -20.84286 -19.69036 -18.82026 -18.37733 -17.95299 -17.61533 -16.91884 -16.86602 -16.66563 -16.37050 -16.21384 -15.86211 -15.71240 -15.37626 -15.29057 -14.91947 -14.66597 -14.43505 -13.98763 -13.95259 -13.85671 -13.73551 -13.49042 -13.21277 -12.94570 -12.86005 -12.81112 -12.73489 -12.57507 -12.41105 -12.22055 -12.11500 -12.05398 -11.82302 -11.71103 -11.46380 -11.32249 -11.18947 -10.97293 -10.89640 -10.70050 -10.59254 -10.51262 -9.74111 -8.71114 -7.78415 -5.12894 1.34468 1.47056 1.48606 1.54584 1.62093 2.53527 2.66082 2.84098 3.39491 3.52205 3.66067 3.72281 3.88127 3.90203 3.92040 4.01989 4.15976 4.24333 4.26673 4.30179 4.35644 4.39806 4.41233 4.51831 4.54669 4.59124 4.63107 4.66896 4.70404 4.77543 4.81158 4.89023 4.89605 4.90287 4.96220 5.06607 5.11892 5.16060 5.23031 5.25405 5.29164 5.54728 5.56453 5.67403 5.71310 5.74110 5.85284 5.99869 6.06831 6.32103 6.33217 7.00484 7.18181 7.88915 8.56136 9.31994 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.015860 B = 0.002922 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.055732 B = 9579.064156 C =10014.206715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.397 6.397 3 C 0.045 3.955 4 C 0.082 3.918 5 H 0.117 0.883 6 O -0.389 6.389 7 C 0.026 3.974 8 C 0.515 3.485 9 O -0.570 6.570 10 N -0.597 5.597 11 C 0.097 3.903 12 C -0.121 4.121 13 C -0.085 4.085 14 C 0.158 3.842 15 H 0.037 0.963 16 C -0.117 4.117 17 C -0.139 4.139 18 C 0.178 3.822 19 N -0.610 5.610 20 C -0.221 4.221 21 H 0.078 0.922 22 C -0.065 4.065 23 N -0.950 5.950 24 Si 0.966 3.034 25 H -0.279 1.279 26 H -0.302 1.302 27 H -0.279 1.279 28 C -0.105 4.105 29 C 0.121 3.879 30 H 0.103 0.897 31 H 0.057 0.943 32 H 0.042 0.958 33 H 0.091 0.909 34 H 0.052 0.948 35 H 0.051 0.949 36 H 0.066 0.934 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.113 0.887 40 H 0.098 0.902 41 H 0.074 0.926 42 H 0.052 0.948 43 H 0.090 0.910 44 H 0.071 0.929 45 H 0.073 0.927 46 H 0.062 0.938 47 H -0.011 1.011 48 H 0.031 0.969 49 H 0.243 0.757 50 H 0.060 0.940 51 H 0.046 0.954 52 H 0.068 0.932 53 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.676 -20.592 -6.873 25.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.316 6.316 3 C -0.033 4.033 4 C 0.021 3.979 5 H 0.135 0.865 6 O -0.307 6.307 7 C -0.070 4.070 8 C 0.302 3.698 9 O -0.448 6.448 10 N -0.331 5.331 11 C -0.025 4.025 12 C -0.159 4.159 13 C -0.105 4.105 14 C 0.052 3.948 15 H 0.055 0.945 16 C -0.154 4.154 17 C -0.178 4.178 18 C 0.052 3.948 19 N -0.334 5.334 20 C -0.350 4.350 21 H 0.096 0.904 22 C -0.258 4.258 23 N -0.599 5.599 24 Si 0.795 3.205 25 H -0.205 1.205 26 H -0.228 1.228 27 H -0.205 1.205 28 C -0.143 4.143 29 C -0.002 4.002 30 H 0.121 0.879 31 H 0.076 0.924 32 H 0.061 0.939 33 H 0.109 0.891 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.085 0.915 37 H 0.113 0.887 38 H 0.105 0.895 39 H 0.131 0.869 40 H 0.116 0.884 41 H 0.093 0.907 42 H 0.070 0.930 43 H 0.109 0.891 44 H 0.089 0.911 45 H 0.092 0.908 46 H 0.080 0.920 47 H 0.007 0.993 48 H 0.050 0.950 49 H 0.052 0.948 50 H 0.078 0.922 51 H 0.065 0.935 52 H 0.087 0.913 53 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -12.195 -20.184 -7.505 24.747 hybrid contribution -0.144 1.869 0.271 1.894 sum -12.339 -18.315 -7.234 23.239 Atomic orbital electron populations 1.22985 0.78986 1.04229 1.00985 1.87813 1.21764 1.26412 1.95617 1.23099 0.91182 0.86400 1.02588 1.21902 0.93574 0.91915 0.90517 0.86531 1.87976 1.88167 1.22171 1.32430 1.23105 1.01955 0.78511 1.03414 1.20632 0.80090 0.86932 0.82124 1.90696 1.44615 1.70257 1.39281 1.48178 1.49245 1.21401 1.14302 1.22287 0.93663 1.01144 0.85363 1.21953 1.00095 0.96225 0.97668 1.21430 0.97351 0.96934 0.94827 1.21190 0.94242 0.85154 0.94193 0.94547 1.22668 0.94232 0.98018 1.00522 1.22881 0.98672 0.96259 0.99975 1.21180 0.84271 0.92677 0.96647 1.44718 1.01824 1.04893 1.81938 1.19220 0.92365 0.84610 1.38828 0.90378 1.25548 0.97073 1.00056 1.03077 1.70146 1.10321 1.22159 1.57302 0.85340 0.77621 0.79395 0.78137 1.20470 1.22823 1.20483 1.21688 0.97737 1.01184 0.93666 1.21491 0.95966 0.84505 0.98223 0.87858 0.92438 0.93881 0.89135 0.92989 0.93009 0.91515 0.88682 0.89533 0.86885 0.88360 0.90703 0.92986 0.89104 0.91101 0.90823 0.91954 0.99297 0.95021 0.94817 0.92175 0.93539 0.91347 0.91413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 11.01 113.37 1.25 1.48 16 2 O -0.40 -6.07 8.83 -144.25 -1.27 -7.34 16 3 C 0.04 0.75 5.14 71.98 0.37 1.12 16 4 C 0.08 1.77 2.07 29.84 0.06 1.83 16 5 H 0.12 1.92 7.09 -2.38 -0.02 1.90 16 6 O -0.39 -10.02 9.90 -125.63 -1.24 -11.27 16 7 C 0.03 0.44 10.71 113.37 1.21 1.65 16 8 C 0.51 14.70 7.08 87.65 0.62 15.32 16 9 O -0.57 -22.01 15.96 15.81 0.25 -21.76 16 10 N -0.60 -15.15 2.97 -818.90 -2.43 -17.59 16 11 C 0.10 1.69 5.11 86.36 0.44 2.13 16 12 C -0.12 -2.42 5.15 30.67 0.16 -2.26 16 13 C -0.08 -2.61 1.94 -10.77 -0.02 -2.63 16 14 C 0.16 5.66 2.90 45.34 0.13 5.79 16 15 H 0.04 1.29 8.14 -2.38 -0.02 1.27 16 16 C -0.12 -3.54 5.31 31.78 0.17 -3.37 16 17 C -0.14 -4.97 7.09 31.99 0.23 -4.74 16 18 C 0.18 8.58 5.46 86.85 0.47 9.05 16 19 N -0.61 -29.08 2.46 -668.27 -1.64 -30.73 16 20 C -0.22 -11.71 9.77 84.03 0.82 -10.89 16 21 H 0.08 3.96 7.83 -2.91 -0.02 3.94 16 22 C -0.06 -3.60 5.47 84.86 0.46 -3.14 16 23 N -0.95 -56.78 10.49 21.65 0.23 -56.55 16 24 Si 0.97 45.33 29.55 68.60 2.03 47.36 16 25 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 26 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 27 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 28 C -0.10 -3.60 4.90 30.67 0.15 -3.45 16 29 C 0.12 3.79 6.42 86.36 0.55 4.34 16 30 H 0.10 0.67 8.14 -2.38 -0.02 0.65 16 31 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.04 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.09 1.14 5.56 -2.39 -0.01 1.13 16 34 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.05 0.75 8.09 -2.39 -0.02 0.73 16 36 H 0.07 1.03 6.40 -2.39 -0.02 1.01 16 37 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.11 1.33 4.59 -2.39 -0.01 1.32 16 40 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.07 1.43 7.40 -2.39 -0.02 1.41 16 42 H 0.05 1.81 7.92 -2.38 -0.02 1.79 16 43 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 44 H 0.07 2.12 5.46 -2.39 -0.01 2.11 16 45 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 46 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 47 H -0.01 -0.59 8.11 -2.39 -0.02 -0.61 16 48 H 0.03 1.76 6.76 -2.39 -0.02 1.74 16 49 H 0.24 14.35 8.31 -92.71 -0.77 13.58 16 50 H 0.06 2.03 5.94 -2.39 -0.01 2.02 16 51 H 0.05 2.06 7.65 -2.39 -0.02 2.04 16 52 H 0.07 2.41 7.04 -2.39 -0.02 2.39 16 53 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -73.99 398.85 3.88 -70.11 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: 0.88 Total: 15.54 kcal Atomic # 6 Polarization: 5.14 SS G_CDS: 7.08 Total: 12.23 kcal Atomic # 7 Polarization: -101.01 SS G_CDS: -3.85 Total: -104.86 kcal Atomic # 8 Polarization: -38.10 SS G_CDS: -2.26 Total: -40.37 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -73.99 3.88 -70.11 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230598124.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.377 kcal (2) G-P(sol) polarization free energy of solvation -73.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds