Wall clock time and date at job start Sat Apr 11 2020 06:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 114.00396 * 2 1 4 4 C 1.53000 * 112.84711 * 64.52136 * 3 2 1 5 5 C 1.50696 * 109.47369 * 48.23307 * 4 3 2 6 6 O 1.21287 * 119.99989 * 3.90189 * 5 4 3 7 7 N 1.34770 * 120.00046 * 183.91074 * 5 4 3 8 8 C 1.46929 * 120.63266 * 359.97438 * 7 5 4 9 9 C 1.53184 * 108.89673 * 126.46634 * 8 7 5 10 10 C 1.53045 * 109.31311 * 54.56545 * 9 8 7 11 11 C 1.53038 * 109.53899 * 298.63737 * 10 9 8 12 12 H 1.09012 * 109.49395 * 301.38248 * 11 10 9 13 13 N 1.46491 * 109.50204 * 181.31736 * 11 10 9 14 14 C 1.36942 * 119.99875 * 299.99967 * 13 11 10 15 15 H 1.08006 * 119.99560 * 321.05389 * 14 13 11 16 16 C 1.38803 * 120.00212 * 141.05596 * 14 13 11 17 17 N 1.31627 * 120.00298 * 157.79816 * 16 14 13 18 18 Si 1.86798 * 120.00197 * 337.79247 * 16 14 13 19 19 H 1.48499 * 109.47222 * 95.24768 * 18 16 14 20 20 H 1.48495 * 109.47467 * 215.24823 * 18 16 14 21 21 H 1.48501 * 109.47129 * 335.24988 * 18 16 14 22 22 C 1.46493 * 120.00503 * 119.99549 * 13 11 10 23 23 C 1.53000 * 109.47299 * 84.75089 * 22 13 11 24 24 O 1.42903 * 109.46880 * 65.66969 * 23 22 13 25 25 C 1.46959 * 120.65447 * 179.81684 * 7 5 4 26 26 C 1.53780 * 113.69144 * 195.79085 * 3 2 1 27 27 C 1.53781 * 87.08085 * 89.12440 * 26 3 2 28 28 C 1.53773 * 87.07970 * 25.43238 * 27 26 3 29 29 H 1.09004 * 109.46593 * 64.69518 * 1 2 3 30 30 H 1.08995 * 109.47334 * 184.69336 * 1 2 3 31 31 H 1.08998 * 109.47276 * 304.69879 * 1 2 3 32 32 H 1.09004 * 109.46957 * 288.22503 * 4 3 2 33 33 H 1.09000 * 109.46701 * 168.22945 * 4 3 2 34 34 H 1.09000 * 109.58393 * 6.60754 * 8 7 5 35 35 H 1.09001 * 109.58543 * 246.32870 * 8 7 5 36 36 H 1.09005 * 109.50131 * 174.51804 * 9 8 7 37 37 H 1.09001 * 109.49799 * 294.61745 * 9 8 7 38 38 H 1.09001 * 109.45776 * 58.65187 * 10 9 8 39 39 H 1.09001 * 109.46354 * 178.61389 * 10 9 8 40 40 H 0.96998 * 120.00358 * 180.02562 * 17 16 14 41 41 H 1.09004 * 109.47383 * 204.75341 * 22 13 11 42 42 H 1.09003 * 109.47449 * 324.75374 * 22 13 11 43 43 H 1.09003 * 109.47420 * 185.67050 * 23 22 13 44 44 H 1.09000 * 109.47378 * 305.67602 * 23 22 13 45 45 H 0.96703 * 113.99573 * 180.02562 * 24 23 22 46 46 H 1.09006 * 109.46782 * 113.74589 * 25 7 5 47 47 H 1.08999 * 109.71080 * 353.45964 * 25 7 5 48 48 H 1.09001 * 113.61548 * 203.67874 * 26 3 2 49 49 H 1.09002 * 113.61165 * 334.57676 * 26 3 2 50 50 H 1.09001 * 113.61497 * 270.88310 * 27 26 3 51 51 H 1.09003 * 113.61095 * 139.98606 * 27 26 3 52 52 H 1.09007 * 113.61624 * 220.01354 * 28 27 26 53 53 H 1.09000 * 113.61661 * 89.11792 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.6979 2.0948 1.2728 5 6 1.9701 1.2325 2.4783 6 8 2.4408 0.1237 2.3370 7 7 1.6902 1.6933 3.7135 8 6 1.1200 3.0344 3.9009 9 6 -0.1566 2.9180 4.7395 10 6 0.1598 2.1820 6.0435 11 6 0.6597 0.7708 5.7264 12 1 -0.1010 0.2343 5.1591 13 7 0.9325 0.0563 6.9758 14 6 1.8606 0.5456 7.8558 15 1 2.7746 0.9871 7.4866 16 6 1.6268 0.4742 9.2222 17 7 2.6360 0.5215 10.0659 18 14 -0.1200 0.3111 9.8637 19 1 -0.4287 -1.1220 10.1000 20 1 -0.2516 1.0625 11.1377 21 1 -1.0683 0.8633 8.8631 22 6 0.2123 -1.1816 7.2840 23 6 0.9210 -2.3631 6.6188 24 8 2.2121 -2.5364 7.2065 25 6 1.9460 0.8630 4.8988 26 6 3.4996 1.3186 -0.3832 27 6 3.0415 1.4646 -1.8439 28 6 1.7513 2.0950 -1.2939 29 1 -0.3633 0.4393 -0.9291 30 1 -0.3634 -1.0242 0.0841 31 1 -0.3634 0.5850 0.8449 32 1 0.6492 2.3920 1.2678 33 1 2.3273 2.9839 1.3126 34 1 0.8811 3.4687 2.9301 35 1 1.8402 3.6687 4.4177 36 1 -0.5348 3.9148 4.9669 37 1 -0.9093 2.3614 4.1811 38 1 0.9304 2.7260 6.5897 39 1 -0.7416 2.1195 6.6532 40 1 2.4727 0.4713 11.0208 41 1 0.1921 -1.3311 8.3636 42 1 -0.8083 -1.1116 6.9078 43 1 0.3316 -3.2686 6.7631 44 1 1.0308 -2.1672 5.5521 45 1 2.7194 -3.2696 6.8320 46 1 2.7344 1.3185 5.4981 47 1 2.2535 -0.1357 4.5886 48 1 4.0398 2.1870 -0.0060 49 1 4.0115 0.3785 -0.1780 50 1 2.8813 0.5119 -2.3486 51 1 3.6516 2.1556 -2.4258 52 1 0.8518 1.7818 -1.8240 53 1 1.8135 3.1757 -1.1658 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264629646.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:55 Heat of formation + Delta-G solvation = -96.385417 kcal Electronic energy + Delta-G solvation = -32469.337316 eV Core-core repulsion = 28342.195472 eV Total energy + Delta-G solvation = -4127.141844 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.59743 -40.36762 -38.92742 -37.72928 -36.45370 -36.33330 -33.93720 -33.14434 -32.07186 -30.81770 -29.24491 -27.92971 -26.50516 -26.17754 -25.89649 -24.15671 -23.54584 -22.69482 -21.30346 -20.35677 -19.82525 -18.49489 -18.39210 -17.99433 -17.38588 -17.17582 -16.89187 -16.46331 -16.24177 -16.03491 -15.74267 -15.42411 -15.30614 -15.03068 -14.81973 -14.70445 -14.60714 -14.51926 -14.08410 -13.97682 -13.83916 -13.46618 -13.33620 -13.04931 -13.01140 -12.88467 -12.48843 -12.44261 -12.28666 -12.15747 -11.96144 -11.85908 -11.76381 -11.66538 -11.63826 -11.55109 -11.27944 -11.02198 -10.76381 -10.70309 -10.53306 -10.21616 -9.62089 -8.64947 -8.08902 -5.47761 1.32490 1.40493 1.51785 1.77811 2.05179 2.49057 2.84746 3.08154 3.32525 3.45463 3.64766 3.67609 3.74504 3.87405 3.95119 4.05774 4.13172 4.15718 4.24903 4.37983 4.39723 4.41487 4.42814 4.48817 4.50011 4.57029 4.59061 4.63811 4.66622 4.73018 4.81552 4.83589 4.85430 4.90932 4.92151 4.98904 5.02843 5.08462 5.08997 5.16784 5.20614 5.30314 5.41338 5.44146 5.56512 5.60482 6.03591 6.27658 6.46524 6.59481 7.01413 7.11066 7.34868 7.70646 8.11331 9.11241 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.018096 B = 0.003212 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.922671 B = 8716.444367 C = 9206.408033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.375 6.375 3 C 0.096 3.904 4 C -0.149 4.149 5 C 0.504 3.496 6 O -0.570 6.570 7 N -0.612 5.612 8 C 0.103 3.897 9 C -0.121 4.121 10 C -0.123 4.123 11 C 0.171 3.829 12 H 0.065 0.935 13 N -0.601 5.601 14 C -0.221 4.221 15 H 0.032 0.968 16 C -0.018 4.018 17 N -0.953 5.953 18 Si 0.938 3.062 19 H -0.286 1.286 20 H -0.313 1.313 21 H -0.248 1.248 22 C 0.121 3.879 23 C 0.064 3.936 24 O -0.576 6.576 25 C 0.123 3.877 26 C -0.133 4.133 27 C -0.130 4.130 28 C -0.147 4.147 29 H 0.062 0.938 30 H 0.078 0.922 31 H 0.039 0.961 32 H 0.120 0.880 33 H 0.130 0.870 34 H 0.122 0.878 35 H 0.067 0.933 36 H 0.100 0.900 37 H 0.074 0.926 38 H 0.046 0.954 39 H 0.051 0.949 40 H 0.257 0.743 41 H 0.042 0.958 42 H 0.082 0.918 43 H 0.058 0.942 44 H 0.036 0.964 45 H 0.376 0.624 46 H 0.038 0.962 47 H 0.051 0.949 48 H 0.105 0.895 49 H 0.045 0.955 50 H 0.070 0.930 51 H 0.088 0.912 52 H 0.079 0.921 53 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.935 7.167 -24.517 27.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.294 6.294 3 C 0.056 3.944 4 C -0.189 4.189 5 C 0.293 3.707 6 O -0.449 6.449 7 N -0.346 5.346 8 C -0.018 4.018 9 C -0.160 4.160 10 C -0.163 4.163 11 C 0.064 3.936 12 H 0.083 0.917 13 N -0.323 5.323 14 C -0.351 4.351 15 H 0.049 0.951 16 C -0.213 4.213 17 N -0.598 5.598 18 Si 0.767 3.233 19 H -0.214 1.214 20 H -0.242 1.242 21 H -0.171 1.171 22 C -0.004 4.004 23 C -0.016 4.016 24 O -0.381 6.381 25 C -0.002 4.002 26 C -0.170 4.170 27 C -0.168 4.168 28 C -0.184 4.184 29 H 0.081 0.919 30 H 0.097 0.903 31 H 0.058 0.942 32 H 0.138 0.862 33 H 0.148 0.852 34 H 0.140 0.860 35 H 0.086 0.914 36 H 0.118 0.882 37 H 0.092 0.908 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.060 0.940 42 H 0.100 0.900 43 H 0.076 0.924 44 H 0.054 0.946 45 H 0.223 0.777 46 H 0.056 0.944 47 H 0.070 0.930 48 H 0.123 0.877 49 H 0.064 0.936 50 H 0.089 0.911 51 H 0.106 0.894 52 H 0.097 0.903 53 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -8.747 6.936 -24.094 26.555 hybrid contribution -0.064 -1.001 1.182 1.550 sum -8.810 5.935 -22.913 25.255 Atomic orbital electron populations 1.22790 0.80819 1.02718 1.00616 1.88030 1.20194 1.26464 1.94667 1.22449 0.95624 0.83741 0.92633 1.22351 1.06050 0.99560 0.90930 1.21268 0.77371 0.87384 0.84633 1.90718 1.45436 1.22682 1.86043 1.48365 1.63293 1.17559 1.05391 1.22023 0.95175 0.82059 1.02582 1.21897 0.97288 1.01947 0.94852 1.21869 1.00387 0.96125 0.97891 1.20751 0.93889 0.93031 0.85945 0.91667 1.44105 1.46180 1.22312 1.19662 1.18233 0.95656 1.34708 0.86495 0.95060 1.25977 0.99755 0.99117 0.96489 1.70034 1.32106 1.55275 1.02354 0.85934 0.83742 0.76638 0.76991 1.21379 1.24159 1.17147 1.21531 0.94588 0.85649 0.98619 1.22861 0.84695 0.98225 0.95840 1.86814 1.30219 1.56257 1.64786 1.21658 0.98565 0.94484 0.85467 1.23085 0.94378 1.02161 0.97419 1.22718 0.97554 1.01201 0.95296 1.23533 0.98808 1.01255 0.94813 0.91937 0.90317 0.94240 0.86218 0.85170 0.86002 0.91421 0.88193 0.90768 0.93474 0.92984 0.93416 0.94017 0.90027 0.92387 0.94599 0.77727 0.94379 0.92994 0.87702 0.93628 0.91119 0.89388 0.90256 0.86495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 10.64 113.37 1.21 1.72 16 2 O -0.37 -9.89 8.96 -128.80 -1.15 -11.04 16 3 C 0.10 1.89 0.41 -10.27 0.00 1.88 16 4 C -0.15 -2.62 3.05 29.85 0.09 -2.53 16 5 C 0.50 14.80 7.53 87.66 0.66 15.46 16 6 O -0.57 -22.62 14.35 17.13 0.25 -22.38 16 7 N -0.61 -18.01 2.98 -818.75 -2.44 -20.45 16 8 C 0.10 2.09 6.34 86.36 0.55 2.63 16 9 C -0.12 -2.58 6.08 30.67 0.19 -2.39 16 10 C -0.12 -4.12 5.11 30.62 0.16 -3.96 16 11 C 0.17 6.53 2.79 45.08 0.13 6.65 16 12 H 0.07 2.31 7.87 -2.38 -0.02 2.29 16 13 N -0.60 -28.02 1.96 -677.55 -1.33 -29.35 16 14 C -0.22 -12.57 8.45 84.03 0.71 -11.86 16 15 H 0.03 2.03 6.91 -2.91 -0.02 2.01 16 16 C -0.02 -1.07 5.26 84.86 0.45 -0.63 16 17 N -0.95 -61.67 13.97 21.65 0.30 -61.36 16 18 Si 0.94 46.83 25.12 68.60 1.72 48.55 16 19 H -0.29 -14.03 6.68 99.48 0.66 -13.37 16 20 H -0.31 -15.92 7.11 99.48 0.71 -15.22 16 21 H -0.25 -11.31 7.11 99.48 0.71 -10.60 16 22 C 0.12 5.20 4.65 86.38 0.40 5.60 16 23 C 0.06 2.46 7.38 71.98 0.53 2.99 16 24 O -0.58 -25.72 13.41 -148.98 -2.00 -27.72 16 25 C 0.12 4.87 5.75 86.37 0.50 5.37 16 26 C -0.13 -2.69 7.40 31.12 0.23 -2.46 16 27 C -0.13 -1.93 8.02 31.12 0.25 -1.68 16 28 C -0.15 -1.77 7.22 31.12 0.22 -1.55 16 29 H 0.06 0.85 6.90 -2.38 -0.02 0.84 16 30 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.04 0.72 6.89 -2.39 -0.02 0.70 16 32 H 0.12 1.43 6.77 -2.39 -0.02 1.41 16 33 H 0.13 1.56 7.87 -2.39 -0.02 1.54 16 34 H 0.12 1.38 5.91 -2.39 -0.01 1.36 16 35 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.10 1.61 8.14 -2.38 -0.02 1.59 16 37 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.05 1.83 7.70 -2.39 -0.02 1.81 16 39 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16 41 H 0.04 2.02 3.72 -2.38 -0.01 2.01 16 42 H 0.08 2.91 8.03 -2.39 -0.02 2.89 16 43 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.04 1.35 8.14 -2.39 -0.02 1.34 16 45 H 0.38 12.64 9.12 -74.06 -0.68 11.97 16 46 H 0.04 1.75 6.81 -2.38 -0.02 1.73 16 47 H 0.05 2.36 7.02 -2.39 -0.02 2.34 16 48 H 0.10 1.72 7.95 -2.39 -0.02 1.71 16 49 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 50 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 51 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 52 H 0.08 0.88 6.86 -2.38 -0.02 0.86 16 53 H 0.12 0.80 8.10 -2.39 -0.02 0.78 16 Total: -1.00 -83.94 401.90 1.80 -82.14 By element: Atomic # 1 Polarization: 26.18 SS G_CDS: 0.18 Total: 26.36 kcal Atomic # 6 Polarization: 8.99 SS G_CDS: 6.26 Total: 15.25 kcal Atomic # 7 Polarization: -107.69 SS G_CDS: -3.46 Total: -111.16 kcal Atomic # 8 Polarization: -58.23 SS G_CDS: -2.91 Total: -61.14 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 1.72 Total: 48.55 kcal Total: -83.94 1.80 -82.14 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264629646.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.244 kcal (2) G-P(sol) polarization free energy of solvation -83.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds