Wall clock time and date at job start Sat Apr 11 2020 06:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42900 * 113.99876 * 2 1 4 4 C 1.53006 * 109.46914 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.46863 * 65.00330 * 4 3 2 6 6 C 1.36931 * 120.00039 * 270.00126 * 5 4 3 7 7 H 1.08002 * 120.00501 * 141.83255 * 6 5 4 8 8 C 1.38821 * 119.99953 * 321.82834 * 6 5 4 9 9 N 1.31618 * 120.00366 * 157.03461 * 8 6 5 10 10 Si 1.86800 * 119.99804 * 337.03569 * 8 6 5 11 11 H 1.48499 * 109.47136 * 95.44936 * 10 8 6 12 12 H 1.48497 * 109.47025 * 215.44966 * 10 8 6 13 13 H 1.48505 * 109.47286 * 335.45150 * 10 8 6 14 14 C 1.46498 * 119.99912 * 89.99658 * 5 4 3 15 15 C 1.53044 * 109.44769 * 124.69278 * 14 5 4 16 16 C 1.53189 * 109.31323 * 181.37909 * 15 14 5 17 17 N 1.46931 * 108.77435 * 305.36551 * 16 15 14 18 18 C 1.34776 * 120.62443 * 233.62737 * 17 16 15 19 19 O 1.21282 * 119.99564 * 179.97438 * 18 17 16 20 20 C 1.50700 * 120.00404 * 359.97438 * 18 17 16 21 21 C 1.53006 * 109.46926 * 179.97438 * 20 18 17 22 22 H 1.08995 * 110.33032 * 307.25033 * 21 20 18 23 23 C 1.54475 * 110.36722 * 184.99893 * 21 20 18 24 24 C 1.54515 * 104.06122 * 217.18802 * 23 21 20 25 25 C 1.54478 * 104.05969 * 0.02562 * 24 23 21 26 26 O 1.44422 * 104.80917 * 23.97428 * 25 24 23 27 27 C 1.46920 * 118.74007 * 53.60791 * 17 16 15 28 28 C 1.53038 * 109.46021 * 244.75249 * 14 5 4 29 29 H 1.09004 * 109.46990 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47190 * 300.00081 * 1 2 3 31 31 H 1.09003 * 109.46703 * 59.99827 * 1 2 3 32 32 H 1.09004 * 109.46985 * 59.99905 * 3 2 1 33 33 H 1.08994 * 109.47165 * 300.00058 * 3 2 1 34 34 H 1.09000 * 109.47299 * 305.00359 * 4 3 2 35 35 H 1.08998 * 109.46901 * 185.00125 * 4 3 2 36 36 H 0.96997 * 120.00287 * 179.97438 * 9 8 6 37 37 H 1.09000 * 109.46141 * 4.72637 * 14 5 4 38 38 H 1.09003 * 109.49598 * 301.33196 * 15 14 5 39 39 H 1.08996 * 109.49728 * 61.42656 * 15 14 5 40 40 H 1.08999 * 109.58585 * 185.57409 * 16 15 14 41 41 H 1.09007 * 109.70618 * 65.22058 * 16 15 14 42 42 H 1.09002 * 109.46736 * 299.99167 * 20 18 17 43 43 H 1.08999 * 109.46937 * 59.99527 * 20 18 17 44 44 H 1.09000 * 110.51367 * 335.83022 * 23 21 20 45 45 H 1.08997 * 110.51323 * 98.41140 * 23 21 20 46 46 H 1.08999 * 110.50763 * 118.64340 * 24 23 21 47 47 H 1.08996 * 110.51665 * 241.35778 * 24 23 21 48 48 H 1.09002 * 110.37619 * 142.81074 * 25 24 23 49 49 H 1.09009 * 110.37007 * 265.03362 * 25 24 23 50 50 H 1.08995 * 109.58596 * 186.60400 * 27 17 16 51 51 H 1.09006 * 109.70555 * 66.25011 * 27 17 16 52 52 H 1.08999 * 109.49821 * 298.57713 * 28 14 5 53 53 H 1.08994 * 109.49882 * 58.67980 * 28 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.0978 -0.7974 -1.3346 7 1 3.8141 -1.3101 -2.2419 8 6 4.5852 -1.5186 -0.2533 9 7 4.2967 -2.7970 -0.1309 10 14 5.6507 -0.6748 1.0282 11 1 4.8032 -0.2383 2.1669 12 1 6.6840 -1.6236 1.5153 13 1 6.3117 0.5083 0.4212 14 6 4.2882 1.3999 -2.4130 15 6 5.7096 1.0966 -2.8925 16 6 6.0446 1.9966 -4.0860 17 7 5.0104 1.8217 -5.1150 18 6 5.3478 1.5028 -6.3803 19 8 4.4848 1.3607 -7.2205 20 6 6.7973 1.3226 -6.7510 21 6 6.9036 0.9663 -8.2352 22 1 6.2633 0.1153 -8.4672 23 6 8.3695 0.6544 -8.6096 24 6 8.5283 1.2448 -10.0287 25 6 7.1397 1.8441 -10.3433 26 8 6.5484 2.1038 -9.0516 27 6 3.6016 2.0008 -4.7384 28 6 3.2941 1.1008 -3.5374 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8464 -0.8899 34 1 3.8509 0.5684 0.8427 35 1 3.9785 2.1765 0.0902 36 1 4.6376 -3.3010 0.6245 37 1 4.2156 2.4511 -2.1342 38 1 6.4149 1.2875 -2.0836 39 1 5.7764 0.0516 -3.1948 40 1 7.0162 1.7170 -4.4932 41 1 6.0687 3.0382 -3.7656 42 1 7.3391 2.2489 -6.5597 43 1 7.2281 0.5195 -6.1531 44 1 9.0532 1.1416 -7.9145 45 1 8.5401 -0.4221 -8.6204 46 1 9.2905 2.0239 -10.0350 47 1 8.7768 0.4601 -10.7433 48 1 7.2454 2.7719 -10.9057 49 1 6.5357 1.1292 -10.9022 50 1 2.9615 1.7240 -5.5759 51 1 3.4224 3.0420 -4.4700 52 1 3.3836 0.0557 -3.8338 53 1 2.2801 1.2947 -3.1877 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269640036.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:12 Heat of formation + Delta-G solvation = -120.637463 kcal Electronic energy + Delta-G solvation = -31562.473964 eV Core-core repulsion = 27434.280473 eV Total energy + Delta-G solvation = -4128.193492 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.33582 -40.13464 -39.20534 -38.27737 -36.58760 -33.97401 -33.47354 -32.84199 -32.40759 -31.71719 -29.96482 -27.79364 -27.16307 -26.33900 -24.65209 -24.10235 -23.26233 -22.59411 -21.91129 -21.30887 -19.93950 -18.48663 -18.12248 -17.53385 -17.30283 -17.04079 -16.91244 -16.66438 -16.39702 -16.14317 -15.99786 -15.80232 -15.62261 -14.98772 -14.89864 -14.61285 -14.45619 -14.39537 -14.15357 -13.75411 -13.48050 -13.38873 -13.11186 -13.00731 -12.95478 -12.87870 -12.59585 -12.46896 -12.29891 -12.21589 -12.15701 -12.05290 -12.00520 -11.80024 -11.63497 -11.45529 -11.30347 -11.15689 -10.71980 -10.67357 -10.47513 -10.32703 -9.56836 -8.60885 -8.01414 -5.37834 1.38793 1.46698 1.57672 1.69722 2.09202 2.56244 2.98325 3.11059 3.17226 3.47564 3.56440 3.66063 3.88202 3.99264 4.05554 4.14865 4.18129 4.23009 4.28077 4.34347 4.36826 4.42888 4.46950 4.51831 4.55930 4.59066 4.60212 4.66811 4.67392 4.70061 4.73500 4.82677 4.85710 4.86935 4.88366 4.89906 4.93931 4.99349 5.10346 5.10941 5.15581 5.22813 5.23225 5.48378 5.62081 5.68030 5.96801 6.10602 6.34859 6.50037 6.60616 7.16064 7.24587 7.81743 8.20114 9.19712 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.016388 B = 0.002817 C = 0.002593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.159153 B = 9937.059498 C =10797.589355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.399 6.399 3 C 0.046 3.954 4 C 0.124 3.876 5 N -0.602 5.602 6 C -0.212 4.212 7 H 0.023 0.977 8 C -0.019 4.019 9 N -0.956 5.956 10 Si 0.937 3.063 11 H -0.287 1.287 12 H -0.320 1.320 13 H -0.241 1.241 14 C 0.174 3.826 15 C -0.134 4.134 16 C 0.114 3.886 17 N -0.610 5.610 18 C 0.507 3.493 19 O -0.586 6.586 20 C -0.130 4.130 21 C 0.084 3.916 22 H 0.049 0.951 23 C -0.147 4.147 24 C -0.148 4.148 25 C 0.033 3.967 26 O -0.392 6.392 27 C 0.122 3.878 28 C -0.125 4.125 29 H 0.072 0.928 30 H 0.051 0.949 31 H 0.042 0.958 32 H 0.055 0.945 33 H 0.050 0.950 34 H 0.034 0.966 35 H 0.095 0.905 36 H 0.254 0.746 37 H 0.087 0.913 38 H 0.075 0.925 39 H 0.040 0.960 40 H 0.107 0.893 41 H 0.096 0.904 42 H 0.126 0.874 43 H 0.128 0.872 44 H 0.094 0.906 45 H 0.088 0.912 46 H 0.088 0.912 47 H 0.089 0.911 48 H 0.101 0.899 49 H 0.052 0.948 50 H 0.064 0.936 51 H 0.089 0.911 52 H 0.024 0.976 53 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.086 15.296 -11.626 20.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.318 6.318 3 C -0.032 4.032 4 C -0.001 4.001 5 N -0.324 5.324 6 C -0.342 4.342 7 H 0.040 0.960 8 C -0.214 4.214 9 N -0.602 5.602 10 Si 0.767 3.233 11 H -0.215 1.215 12 H -0.250 1.250 13 H -0.164 1.164 14 C 0.069 3.931 15 C -0.174 4.174 16 C -0.008 4.008 17 N -0.343 5.343 18 C 0.297 3.703 19 O -0.467 6.467 20 C -0.169 4.169 21 C 0.026 3.974 22 H 0.067 0.933 23 C -0.184 4.184 24 C -0.186 4.186 25 C -0.044 4.044 26 O -0.312 6.312 27 C -0.001 4.001 28 C -0.165 4.165 29 H 0.091 0.909 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.052 0.948 35 H 0.113 0.887 36 H 0.063 0.937 37 H 0.105 0.895 38 H 0.093 0.907 39 H 0.059 0.941 40 H 0.126 0.874 41 H 0.115 0.885 42 H 0.144 0.856 43 H 0.146 0.854 44 H 0.113 0.887 45 H 0.107 0.893 46 H 0.107 0.893 47 H 0.108 0.892 48 H 0.119 0.881 49 H 0.071 0.929 50 H 0.083 0.917 51 H 0.108 0.892 52 H 0.043 0.957 53 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.654 15.136 -11.906 20.723 hybrid contribution -0.385 -0.802 0.795 1.194 sum 7.269 14.334 -11.111 19.538 Atomic orbital electron populations 1.22763 0.81610 1.02238 1.00090 1.88230 1.19603 1.28744 1.95209 1.23303 0.96172 0.84297 0.99462 1.21537 0.91888 0.97678 0.89005 1.44196 1.76395 1.02334 1.09449 1.18112 1.34331 0.82020 0.99718 0.95963 1.25941 0.99911 0.95181 1.00351 1.70059 1.47440 1.10649 1.32011 0.85947 0.79095 0.78603 0.79620 1.21500 1.24950 1.16431 1.20582 0.92305 0.94183 0.86067 1.22199 0.98115 0.99464 0.97578 1.21992 0.90968 1.00810 0.87052 1.48277 1.08027 1.68814 1.09187 1.21221 0.92503 0.75206 0.81405 1.90661 1.53084 1.52875 1.50063 1.21883 0.92437 1.06549 0.96031 1.22774 0.95807 0.88692 0.90092 0.93261 1.23016 0.94753 1.02871 0.97786 1.22930 0.97319 1.01556 0.96781 1.23580 0.93359 1.01559 0.85882 1.89186 1.76450 1.42002 1.23568 1.21488 0.82118 0.99934 0.96576 1.22175 1.00144 0.98249 0.95964 0.90910 0.93035 0.93909 0.92663 0.93184 0.94768 0.88679 0.93719 0.89545 0.90684 0.94075 0.87441 0.88540 0.85644 0.85443 0.88692 0.89335 0.89344 0.89220 0.88097 0.92945 0.91717 0.89249 0.95671 0.92040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.97 11.01 113.37 1.25 2.22 16 2 O -0.40 -17.50 10.18 -148.98 -1.52 -19.02 16 3 C 0.05 1.64 6.28 71.98 0.45 2.09 16 4 C 0.12 4.78 4.93 86.38 0.43 5.21 16 5 N -0.60 -25.83 1.98 -677.86 -1.34 -27.17 16 6 C -0.21 -11.59 8.05 84.04 0.68 -10.92 16 7 H 0.02 1.44 7.24 -2.91 -0.02 1.42 16 8 C -0.02 -1.10 5.29 84.86 0.45 -0.65 16 9 N -0.96 -61.13 13.97 21.65 0.30 -60.83 16 10 Si 0.94 45.15 25.12 68.60 1.72 46.88 16 11 H -0.29 -13.61 6.67 99.48 0.66 -12.94 16 12 H -0.32 -16.03 7.11 99.48 0.71 -15.32 16 13 H -0.24 -10.27 7.11 99.48 0.71 -9.56 16 14 C 0.17 5.87 2.60 45.02 0.12 5.99 16 15 C -0.13 -4.12 5.23 30.67 0.16 -3.96 16 16 C 0.11 2.46 6.34 86.36 0.55 3.01 16 17 N -0.61 -16.91 2.97 -818.90 -2.43 -19.35 16 18 C 0.51 15.35 7.63 87.66 0.67 16.02 16 19 O -0.59 -23.07 15.02 3.24 0.05 -23.02 16 20 C -0.13 -2.71 3.67 29.85 0.11 -2.60 16 21 C 0.08 1.91 2.74 31.10 0.09 1.99 16 22 H 0.05 1.35 7.90 -2.39 -0.02 1.33 16 23 C -0.15 -2.10 6.63 31.61 0.21 -1.89 16 24 C -0.15 -1.88 7.09 31.61 0.22 -1.66 16 25 C 0.03 0.60 7.63 72.48 0.55 1.15 16 26 O -0.39 -10.40 10.92 -142.70 -1.56 -11.96 16 27 C 0.12 3.61 6.43 86.36 0.56 4.16 16 28 C -0.13 -4.39 5.38 30.67 0.16 -4.22 16 29 H 0.07 2.40 8.14 -2.38 -0.02 2.38 16 30 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 33 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.03 1.53 3.40 -2.39 -0.01 1.53 16 35 H 0.10 2.85 7.88 -2.39 -0.02 2.83 16 36 H 0.25 15.59 8.31 -92.71 -0.77 14.82 16 37 H 0.09 2.35 7.77 -2.39 -0.02 2.33 16 38 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 39 H 0.04 1.58 7.61 -2.39 -0.02 1.56 16 40 H 0.11 1.73 5.93 -2.39 -0.01 1.71 16 41 H 0.10 1.58 8.14 -2.38 -0.02 1.56 16 42 H 0.13 1.98 7.94 -2.39 -0.02 1.97 16 43 H 0.13 2.15 7.69 -2.39 -0.02 2.13 16 44 H 0.09 1.05 7.87 -2.39 -0.02 1.03 16 45 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 46 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 47 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 48 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 49 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 50 H 0.06 2.19 7.00 -2.39 -0.02 2.17 16 51 H 0.09 2.13 8.14 -2.38 -0.02 2.11 16 52 H 0.02 1.09 7.24 -2.39 -0.02 1.07 16 53 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -81.63 405.75 2.70 -78.94 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: 0.83 Total: 19.59 kcal Atomic # 6 Polarization: 9.30 SS G_CDS: 6.65 Total: 15.95 kcal Atomic # 7 Polarization: -103.88 SS G_CDS: -3.47 Total: -107.35 kcal Atomic # 8 Polarization: -50.98 SS G_CDS: -3.03 Total: -54.00 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 1.72 Total: 46.88 kcal Total: -81.63 2.70 -78.94 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269640036.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.702 kcal (2) G-P(sol) polarization free energy of solvation -81.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds