Wall clock time and date at job start Sat Apr 11 2020 06:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42907 * 109.47206 * 2 1 4 4 C 1.42894 * 114.00033 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.47538 * 30.00085 * 4 3 2 6 6 C 1.50700 * 109.47187 * 269.99586 * 4 3 2 7 7 O 1.21285 * 119.99894 * 355.28291 * 6 4 3 8 8 N 1.34774 * 120.00096 * 174.99794 * 6 4 3 9 9 C 1.46508 * 119.99927 * 179.97438 * 8 6 4 10 10 C 1.53001 * 109.45676 * 60.03582 * 9 8 6 11 11 C 1.53039 * 109.46088 * 300.07249 * 9 8 6 12 12 C 1.53189 * 109.31554 * 301.34250 * 11 9 8 13 13 N 1.46927 * 108.77655 * 305.36919 * 12 11 9 14 14 C 1.36933 * 120.63011 * 233.58995 * 13 12 11 15 15 H 1.07997 * 120.00162 * 27.68182 * 14 13 12 16 16 C 1.38813 * 119.99990 * 207.68991 * 14 13 12 17 17 N 1.31626 * 119.99883 * 17.36413 * 16 14 13 18 18 Si 1.86802 * 120.00159 * 197.36294 * 16 14 13 19 19 H 1.48493 * 109.46943 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.46984 * 119.99989 * 18 16 14 21 21 H 1.48501 * 109.47240 * 240.00004 * 18 16 14 22 22 C 1.46924 * 118.73947 * 53.60330 * 13 12 11 23 23 C 1.53046 * 109.45722 * 180.02562 * 9 8 6 24 24 C 1.53002 * 109.47160 * 149.99868 * 4 3 2 25 25 H 1.08998 * 110.75314 * 182.01182 * 24 4 3 26 26 C 1.55297 * 110.84647 * 305.71548 * 24 4 3 27 27 C 1.54950 * 100.94232 * 152.32056 * 26 24 4 28 28 O 1.43641 * 105.13606 * 323.55408 * 27 26 24 29 29 C 1.43239 * 109.97278 * 24.42679 * 28 27 26 30 30 H 1.09001 * 109.47119 * 60.00438 * 1 2 3 31 31 H 1.09005 * 109.47219 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47289 * 299.99873 * 1 2 3 33 33 H 1.08994 * 109.47351 * 239.99767 * 2 1 3 34 34 H 1.09001 * 109.47119 * 119.99562 * 2 1 3 35 35 H 0.97002 * 120.00367 * 0.02562 * 8 6 4 36 36 H 1.08998 * 109.47325 * 59.99762 * 10 9 8 37 37 H 1.08999 * 109.46829 * 179.97438 * 10 9 8 38 38 H 1.09008 * 109.46804 * 299.99294 * 10 9 8 39 39 H 1.09000 * 109.49829 * 61.30046 * 11 9 8 40 40 H 1.09001 * 109.49379 * 181.39011 * 11 9 8 41 41 H 1.08998 * 109.58611 * 185.58066 * 12 11 9 42 42 H 1.08998 * 109.69983 * 65.22124 * 12 11 9 43 43 H 0.96994 * 119.99704 * 180.02562 * 17 16 14 44 44 H 1.08998 * 109.58833 * 186.60560 * 22 13 12 45 45 H 1.09002 * 109.70553 * 66.25223 * 22 13 12 46 46 H 1.08994 * 109.49122 * 178.61150 * 23 9 8 47 47 H 1.08998 * 109.49463 * 298.70221 * 23 9 8 48 48 H 1.09005 * 111.12534 * 270.23618 * 26 24 4 49 49 H 1.09002 * 111.13056 * 34.40202 * 26 24 4 50 50 H 1.09000 * 110.30929 * 204.63415 * 27 26 24 51 51 H 1.09002 * 110.30982 * 82.47227 * 27 26 24 52 52 H 1.08997 * 109.83149 * 238.77623 * 29 28 27 53 53 H 1.08999 * 109.90841 * 117.84430 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 1 3.8635 0.6016 -0.5129 6 6 3.9310 1.5001 1.4216 7 8 3.1414 1.5245 2.3419 8 7 5.2556 1.5030 1.6699 9 6 5.7418 1.5424 3.0514 10 6 5.2270 0.3163 3.8081 11 6 5.2332 2.8138 3.7349 12 6 5.7219 4.0384 2.9550 13 7 7.1838 3.9655 2.8275 14 6 7.9718 5.0127 3.2240 15 1 7.6334 5.6778 4.0047 16 6 9.2056 5.2196 2.6225 17 7 9.4787 4.6495 1.4680 18 14 10.4784 6.3069 3.4515 19 1 9.9292 6.8251 4.7302 20 1 11.7045 5.5146 3.7238 21 1 10.8130 7.4459 2.5593 22 6 7.7840 2.7476 2.2660 23 6 7.2723 1.5380 3.0535 24 6 3.8409 2.7456 -0.7207 25 1 4.9264 2.8350 -0.7636 26 6 3.2204 2.8032 -2.1432 27 6 3.1255 4.3344 -2.3610 28 8 2.7882 4.8760 -1.0741 29 6 3.2144 3.9815 -0.0397 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 5.8871 1.4797 0.9340 36 1 5.5886 -0.5894 3.3212 37 1 5.5891 0.3452 4.8358 38 1 4.1370 0.3195 3.8062 39 1 4.1434 2.8055 3.7538 40 1 5.6149 2.8559 4.7550 41 1 5.4467 4.9467 3.4912 42 1 5.2686 4.0477 1.9638 43 1 10.3410 4.7938 1.0478 44 1 8.8694 2.8042 2.3475 45 1 7.5010 2.6478 1.2181 46 1 7.6347 1.5922 4.0800 47 1 7.6340 0.6214 2.5874 48 1 3.8800 2.3420 -2.8784 49 1 2.2329 2.3421 -2.1601 50 1 2.3447 4.5658 -3.0855 51 1 4.0842 4.7287 -2.6980 52 1 2.3581 3.6776 0.5623 53 1 3.9555 4.4709 0.5922 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270243679.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:19 Heat of formation + Delta-G solvation = -127.613876 kcal Electronic energy + Delta-G solvation = -33162.369572 eV Core-core repulsion = 29033.873560 eV Total energy + Delta-G solvation = -4128.496012 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.83852 -40.41515 -39.22178 -38.09078 -36.05138 -34.53907 -33.53786 -32.32903 -31.84724 -31.60360 -30.37890 -29.07019 -27.46701 -25.91851 -23.96229 -23.82539 -23.74502 -22.76798 -22.25173 -21.32446 -20.10814 -18.94485 -18.40353 -18.08575 -17.51945 -16.96486 -16.83814 -16.22447 -16.20375 -15.88638 -15.68066 -15.60847 -15.18008 -15.10801 -14.80544 -14.73361 -14.46672 -14.22170 -14.06680 -13.78538 -13.31384 -13.19646 -13.11943 -13.04840 -12.90166 -12.80989 -12.63043 -12.62592 -12.51967 -12.37454 -12.25437 -12.15126 -12.00464 -11.87556 -11.72953 -11.67746 -11.40805 -11.29889 -11.04765 -10.53690 -10.50172 -10.06793 -9.92410 -8.64362 -7.87383 -5.30077 1.44904 1.48138 1.57533 1.62046 2.12039 2.51379 2.66706 2.91974 3.27277 3.31612 3.58807 3.69299 3.77060 3.84188 3.95268 4.04759 4.12818 4.14708 4.22141 4.26529 4.29017 4.38651 4.45340 4.47899 4.51682 4.60099 4.73943 4.74918 4.79359 4.84284 4.85542 4.88395 4.91596 4.92157 4.95296 4.99102 5.06769 5.15410 5.20983 5.25265 5.28624 5.31298 5.36003 5.50032 5.64919 5.69701 5.78618 6.02288 6.09541 6.40210 6.67845 7.17434 7.32648 7.87187 8.38617 9.18275 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013158 B = 0.003938 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.480597 B = 7108.073192 C = 8475.048689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.050 3.950 3 O -0.368 6.368 4 C 0.093 3.907 5 H 0.122 0.878 6 C 0.490 3.510 7 O -0.556 6.556 8 N -0.704 5.704 9 C 0.189 3.811 10 C -0.149 4.149 11 C -0.131 4.131 12 C 0.153 3.847 13 N -0.603 5.603 14 C -0.264 4.264 15 H 0.055 0.945 16 C -0.041 4.041 17 N -0.925 5.925 18 Si 0.960 3.040 19 H -0.274 1.274 20 H -0.286 1.286 21 H -0.293 1.293 22 C 0.179 3.821 23 C -0.131 4.131 24 C -0.112 4.112 25 H 0.104 0.896 26 C -0.132 4.132 27 C 0.040 3.960 28 O -0.410 6.410 29 C 0.063 3.937 30 H 0.066 0.934 31 H 0.091 0.909 32 H 0.045 0.955 33 H 0.075 0.925 34 H 0.039 0.961 35 H 0.405 0.595 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.059 0.941 39 H 0.067 0.933 40 H 0.058 0.942 41 H 0.032 0.968 42 H 0.014 0.986 43 H 0.250 0.750 44 H 0.057 0.943 45 H 0.011 0.989 46 H 0.065 0.935 47 H 0.084 0.916 48 H 0.114 0.886 49 H 0.092 0.908 50 H 0.102 0.898 51 H 0.062 0.938 52 H 0.062 0.938 53 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.184 -13.901 -8.151 20.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.026 4.026 3 O -0.286 6.286 4 C 0.031 3.969 5 H 0.140 0.860 6 C 0.277 3.723 7 O -0.434 6.434 8 N -0.357 5.357 9 C 0.103 3.897 10 C -0.207 4.207 11 C -0.171 4.171 12 C 0.027 3.973 13 N -0.327 5.327 14 C -0.394 4.394 15 H 0.073 0.927 16 C -0.237 4.237 17 N -0.571 5.571 18 Si 0.789 3.211 19 H -0.199 1.199 20 H -0.213 1.213 21 H -0.220 1.220 22 C 0.054 3.946 23 C -0.171 4.171 24 C -0.131 4.131 25 H 0.123 0.877 26 C -0.169 4.169 27 C -0.035 4.035 28 O -0.330 6.330 29 C -0.013 4.013 30 H 0.085 0.915 31 H 0.110 0.890 32 H 0.065 0.935 33 H 0.093 0.907 34 H 0.058 0.942 35 H 0.241 0.759 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.085 0.915 40 H 0.076 0.924 41 H 0.051 0.949 42 H 0.032 0.968 43 H 0.060 0.940 44 H 0.075 0.925 45 H 0.029 0.971 46 H 0.084 0.916 47 H 0.103 0.897 48 H 0.132 0.868 49 H 0.111 0.889 50 H 0.120 0.880 51 H 0.081 0.919 52 H 0.081 0.919 53 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -12.858 -13.508 -7.536 20.115 hybrid contribution 1.457 0.775 0.380 1.693 sum -11.401 -12.733 -7.156 18.529 Atomic orbital electron populations 1.21712 0.92821 1.03281 1.02462 1.22753 0.96541 0.82623 1.00671 1.87997 1.18154 1.28185 1.94287 1.21814 0.83793 1.00051 0.91240 0.86015 1.21598 0.82424 0.75744 0.92565 1.90623 1.55984 1.50001 1.46786 1.46150 1.06719 1.73939 1.08895 1.20145 0.93626 0.94631 0.81316 1.22096 1.01944 0.96466 1.00188 1.22230 1.00438 0.95409 0.99042 1.20865 0.84484 0.95612 0.96312 1.44229 1.00326 1.14254 1.73901 1.19442 0.99680 1.07044 1.13280 0.92713 1.25611 1.01382 1.00768 0.95930 1.70137 1.22687 1.48615 1.15689 0.85328 0.79453 0.78249 0.78119 1.19892 1.21259 1.22047 1.20589 0.97663 0.83459 0.92897 1.22326 0.93093 0.99621 1.02027 1.22826 1.01431 0.92267 0.96532 0.87739 1.23247 1.03224 0.96188 0.94225 1.23623 1.01405 0.93309 0.85199 1.88362 1.82087 1.46471 1.16103 1.23003 0.98162 0.89630 0.90530 0.91530 0.89024 0.93545 0.90732 0.94230 0.75859 0.91421 0.91581 0.92223 0.91489 0.92354 0.94910 0.96820 0.94032 0.92511 0.97059 0.91635 0.89737 0.86814 0.88900 0.87963 0.91946 0.91937 0.93846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 10.28 71.98 0.74 -1.59 16 2 C 0.05 0.91 6.46 71.98 0.46 1.38 16 3 O -0.37 -8.88 7.66 -129.98 -1.00 -9.87 16 4 C 0.09 2.07 2.34 29.85 0.07 2.14 16 5 H 0.12 1.85 7.79 -2.39 -0.02 1.83 16 6 C 0.49 14.10 5.92 87.66 0.52 14.62 16 7 O -0.56 -19.70 12.72 15.95 0.20 -19.50 16 8 N -0.70 -19.83 4.07 -422.78 -1.72 -21.55 16 9 C 0.19 5.93 0.66 3.63 0.00 5.94 16 10 C -0.15 -4.08 8.40 71.98 0.60 -3.47 16 11 C -0.13 -4.92 4.67 30.67 0.14 -4.77 16 12 C 0.15 6.72 6.25 86.36 0.54 7.26 16 13 N -0.60 -29.61 2.99 -699.21 -2.09 -31.70 16 14 C -0.26 -14.56 9.59 84.03 0.81 -13.75 16 15 H 0.06 3.06 7.89 -2.91 -0.02 3.04 16 16 C -0.04 -2.24 4.91 84.86 0.42 -1.82 16 17 N -0.93 -52.21 11.19 21.65 0.24 -51.97 16 18 Si 0.96 44.57 29.59 68.60 2.03 46.60 16 19 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 20 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 21 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 22 C 0.18 7.84 5.03 86.35 0.43 8.27 16 23 C -0.13 -4.40 4.95 30.66 0.15 -4.24 16 24 C -0.11 -2.63 2.91 -9.53 -0.03 -2.66 16 25 H 0.10 2.48 8.05 -2.39 -0.02 2.46 16 26 C -0.13 -2.36 6.55 32.05 0.21 -2.15 16 27 C 0.04 0.90 7.78 72.65 0.56 1.47 16 28 O -0.41 -13.28 11.36 -148.98 -1.69 -14.97 16 29 C 0.06 2.03 6.71 72.45 0.49 2.52 16 30 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 32 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.07 0.94 8.08 -2.39 -0.02 0.92 16 34 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.41 10.37 7.17 -92.71 -0.67 9.70 16 36 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.06 1.83 6.16 -2.38 -0.01 1.81 16 39 H 0.07 2.61 6.21 -2.39 -0.01 2.59 16 40 H 0.06 2.21 8.14 -2.39 -0.02 2.20 16 41 H 0.03 1.50 7.93 -2.39 -0.02 1.49 16 42 H 0.01 0.62 6.03 -2.39 -0.01 0.61 16 43 H 0.25 13.68 8.31 -92.71 -0.77 12.91 16 44 H 0.06 2.87 6.04 -2.39 -0.01 2.85 16 45 H 0.01 0.50 6.94 -2.39 -0.02 0.48 16 46 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 47 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 48 H 0.11 1.37 8.14 -2.38 -0.02 1.35 16 49 H 0.09 1.63 7.21 -2.39 -0.02 1.62 16 50 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 51 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 52 H 0.06 2.20 7.17 -2.39 -0.02 2.19 16 53 H 0.04 1.63 6.43 -2.39 -0.02 1.61 16 Total: -1.00 -68.88 399.41 2.33 -66.55 By element: Atomic # 1 Polarization: 27.07 SS G_CDS: 0.23 Total: 27.30 kcal Atomic # 6 Polarization: 2.99 SS G_CDS: 6.13 Total: 9.12 kcal Atomic # 7 Polarization: -101.66 SS G_CDS: -3.57 Total: -105.23 kcal Atomic # 8 Polarization: -41.85 SS G_CDS: -2.48 Total: -44.34 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -68.88 2.33 -66.55 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270243679.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.066 kcal (2) G-P(sol) polarization free energy of solvation -68.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds